Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G435.4 Capsicum annuum HOM05D007382 ORTHO05D009012 4.3e-80 301.2 148 100.0
Nitab4.5_0007103g0020 Nicotiana tabacum HOM05D007382 ORTHO05D009012 1.8e-65 252.7 149 82.6
Nitab4.5_0000202g0370 Nicotiana tabacum HOM05D007382 ORTHO05D009012 3.9e-65 251.5 149 81.9
PGSC0003DMG401010988 Solanum tuberosum HOM05D007382 ORTHO05D009012 7.0e-62 240.7 146 79.5
Sopen10g033880 Solanum pennellii HOM05D007382 ORTHO05D009012 1.0e-60 236.9 146 78.8
Solyc10g084440.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 1.2e-58 229.9 146 76.7
Peaxi162Scf00472g00081 Petunia axillaris HOM05D007382 ORTHO05D009012 2.7e-58 228.8 140 77.1
PGSC0003DMG400038088 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.4e-54 216.5 132 77.3
PGSC0003DMG400037466 Solanum tuberosum HOM05D007382 ORTHO05D009012 3.4e-48 195.3 132 69.7
CSS0017861 Camellia sinensis var. sinensis HOM05D007382 ORTHO05D009012 1.1e-46 190.3 140 62.1
Sopen09g026050 Solanum pennellii HOM05D007382 ORTHO05D009012 3.1e-46 188.7 133 67.7
Solyc07g014660.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 4.1e-46 188.3 132 70.5
Sopen07g005520 Solanum pennellii HOM05D007382 ORTHO05D009012 4.1e-46 188.3 132 70.5
Hma1.2p1_0111F.1_g053520 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 2.5e-43 179.1 148 58.8
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 3.3e-43 178.7 140 60.0
Oeu029114.1 Olea europaea HOM05D007382 ORTHO05D009012 5.5e-43 177.9 139 63.3
Dinv37282 Davidia involucrata HOM05D007382 ORTHO05D009012 1.2e-42 176.8 144 59.0
TAR369G0081 Trochodendron aralioides HOM05D007382 ORTHO05D009012 5.2e-41 171.4 149 55.7
Ciclev10012925m.g Citrus clementina HOM05D007382 ORTHO05D009012 8.9e-41 170.6 140 59.3
Cc06_g15490 Coffea canephora HOM05D007382 ORTHO05D009012 3.4e-40 168.7 138 58.0
Hma1.2p1_0111F.1_g053480 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 4.4e-40 168.3 148 56.8
MSTRG.19120 Avicennia marina HOM05D007382 ORTHO05D009012 8.3e-39 164.1 128 62.5
Nn3g20330 Nelumbo nucifera HOM05D007382 ORTHO05D009012 5.4e-38 161.4 141 55.3
HanXRQChr07g0195861 Helianthus annuus HOM05D007382 ORTHO05D009012 9.2e-38 160.6 141 56.0
Nn2g10574 Nelumbo nucifera HOM05D007382 ORTHO05D009012 2.0e-37 159.5 139 54.7
Sabra06G0166500 Salix brachista HOM05D007382 ORTHO05D009012 7.8e-37 157.5 141 56.7
SGA_v2.0_scaffold126G33863 Striga asiatica HOM05D007382 ORTHO05D009012 2.3e-36 156.0 136 55.9
Duzib093G1372 Durio zibethinus HOM05D007382 ORTHO05D009012 3.8e-36 155.2 120 59.2
Lsat_1_v5_gn_2_110741 Lactuca sativa HOM05D007382 ORTHO05D009012 5.0e-36 154.8 141 53.2
Lsat_1_v5_gn_2_111101 Lactuca sativa HOM05D007382 ORTHO05D009012 5.0e-36 154.8 141 53.2
Potri.006G216000 Populus trichocarpa HOM05D007382 ORTHO05D009012 2.5e-35 152.5 140 52.9
Thecc.05G050100 Theobroma cacao HOM05D007382 ORTHO05D009012 3.3e-35 152.1 137 55.5
Lsat_1_v5_gn_2_110841 Lactuca sativa HOM05D007382 ORTHO05D009012 7.3e-35 151.0 141 51.8
Hund10951 Selenicereus undatus HOM05D007382 ORTHO05D009012 9.5e-35 150.6 156 48.7
MELO3C003080.2 Cucumis melo HOM05D007382 ORTHO05D009012 1.6e-34 149.8 146 47.9
FvH4_6g14870 Fragaria vesca HOM05D007382 ORTHO05D009012 2.1e-34 149.4 135 55.6
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 2.1e-34 149.4 135 55.6
QL07p045887 Quercus lobata HOM05D007382 ORTHO05D009012 2.1e-34 149.4 129 54.3
HanXRQChr10g0297271 Helianthus annuus HOM05D007382 ORTHO05D009012 3.6e-34 148.7 134 53.7
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 4.7e-34 148.3 133 54.9
Migut.J00393 Erythranthe guttata HOM05D007382 ORTHO05D009012 4.7e-34 148.3 133 57.9
CANSAT80G2903 Cannabis sativa HOM05D007382 ORTHO05D009012 6.1e-34 147.9 136 54.4
FAN05G3594 Fragaria x ananassa HOM05D007382 ORTHO05D009012 6.1e-34 147.9 135 54.8
FAN09G0189 Fragaria x ananassa HOM05D007382 ORTHO05D009012 6.1e-34 147.9 135 54.1
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 6.1e-34 147.9 135 54.1
PGSC0003DMG400035622 Solanum tuberosum HOM05D007382 ORTHO05D009012 8.0e-34 147.5 112 63.4
MD12G1130200 Malus domestica HOM05D007382 ORTHO05D009012 1.8e-33 146.4 138 50.7
RcHm_v2.0_Chr3g0468081 Rosa chinensis HOM05D007382 ORTHO05D009012 1.8e-33 146.4 133 54.9
Manes.09G071800 Manihot esculenta HOM05D007382 ORTHO05D009012 2.3e-33 146.0 150 50.7
CiPaw.10G139200 Carya illinoinensis HOM05D007382 ORTHO05D009012 3.0e-33 145.6 129 54.3
Gohir.D04G117000 Gossypium hirsutum HOM05D007382 ORTHO05D009012 3.0e-33 145.6 132 52.3
Gorai.009G421900 Gossypium raimondii HOM05D007382 ORTHO05D009012 3.0e-33 145.6 132 52.3
Prupe.6G245200 Prunus persica HOM05D007382 ORTHO05D009012 4.0e-33 145.2 123 54.5
Ah.08g212080 Amaranthus hybridus HOM05D007382 ORTHO05D009012 5.2e-33 144.8 138 51.4
AUR62036838 Chenopodium quinoa HOM05D007382 ORTHO05D009012 8.9e-33 144.1 159 47.2
Sc01g0003740 Simmondsia chinensis HOM05D007382 ORTHO05D009012 8.9e-33 144.1 136 50.7
CsaV3_4G024470 Cucumis sativus L. HOM05D007382 ORTHO05D009012 2.0e-32 142.9 145 46.9
Gohir.A04G077800 Gossypium hirsutum HOM05D007382 ORTHO05D009012 2.0e-32 142.9 132 51.5
Haze_20685 Corylus avellana HOM05D007382 ORTHO05D009012 2.6e-32 142.5 123 52.0
COL.COLO4_10307 Corchorus olitorius HOM05D007382 ORTHO05D009012 3.4e-32 142.1 131 54.2
Eucgr.A01209 Eucalyptus grandis HOM05D007382 ORTHO05D009012 3.4e-32 142.1 138 52.2
EL10Ac7g17270 Beta vulgaris HOM05D007382 ORTHO05D009012 5.8e-32 141.4 149 53.0
ECA238G1385 Erigeron canadensis HOM05D007382 ORTHO05D009012 5.8e-32 141.4 135 49.6
Glyma.03G175900 Glycine max HOM05D007382 ORTHO05D009012 5.8e-32 141.4 123 49.6
Sed0019756 Sechium edule HOM05D007382 ORTHO05D009012 5.8e-32 141.4 146 45.9
Cfa017470 Carpinus fangiana HOM05D007382 ORTHO05D009012 2.9e-31 139.0 123 51.2
Aa31LG10G12820 Aethionema arabicum HOM05D007382 ORTHO05D009012 6.4e-31 137.9 122 54.9
ClCG04G008690 Citrullus lanatus HOM05D007382 ORTHO05D009012 8.3e-31 137.5 146 43.8
Ca_08808_v3 Cicer arietinum L. HOM05D007382 ORTHO05D009012 1.1e-30 137.1 124 50.0
AL5G39780 Arabidopsis lyrata HOM05D007382 ORTHO05D009012 1.4e-30 136.7 129 53.5
Glyma.19G176400 Glycine max HOM05D007382 ORTHO05D009012 3.2e-30 135.6 125 52.0
Psat7g058560 Pisum sativum HOM05D007382 ORTHO05D009012 3.2e-30 135.6 125 49.6
TWI77G0838 Tripterygium wilfordii HOM05D007382 ORTHO05D009012 7.0e-30 134.4 134 51.5
Carub.0005s2494 Capsella rubella HOM05D007382 ORTHO05D009012 9.2e-30 134.0 128 52.3
MBI04_g28758_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 1.2e-29 133.7 130 51.5
MBI04_g38440_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 1.2e-29 133.7 130 51.5
CDE05G2022 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 1.6e-29 133.3 126 53.2
BcaC02g09988 Brassica carinata HOM05D007382 ORTHO05D009012 7.8e-29 131.0 134 47.0
Sp5g04630 Schrenkiella parvula HOM05D007382 ORTHO05D009012 7.8e-29 131.0 129 50.4
ATR0709G053 Amborella trichopoda HOM05D007382 ORTHO05D009012 1.7e-28 129.8 132 50.0
PSO384G2862 Papaver somniferum HOM05D007382 ORTHO05D009012 3.0e-28 129.0 173 42.2
Phvul.001G173000 Phaseolus vulgaris HOM05D007382 ORTHO05D009012 3.0e-28 129.0 126 47.6
Medtr7g100230 Medicago truncatula HOM05D007382 ORTHO05D009012 6.6e-28 127.9 126 46.8
CARHR168440 Cardamine hirsuta HOM05D007382 ORTHO05D009012 1.1e-27 127.1 118 57.6
Aqoxy5G00351 Aquilegia oxysepala HOM05D007382 ORTHO05D009012 2.5e-27 125.9 132 47.0
Medtr7g100200 Medicago truncatula HOM05D007382 ORTHO05D009012 2.5e-27 125.9 123 48.0
Sed0025265 Sechium edule HOM05D007382 ORTHO05D009012 2.5e-27 125.9 146 43.2
BcaB02g08277 Brassica carinata HOM05D007382 ORTHO05D009012 5.6e-27 124.8 142 45.8
VMungo1383G3160 Vigna mungo HOM05D007382 ORTHO05D009012 5.6e-27 124.8 123 47.2
unitig_744.g24666 Utricularia gibba HOM05D007382 ORTHO05D009012 1.6e-26 123.2 133 45.1
Zm00001eb148770 Zea mays HOM05D007382 ORTHO05D009012 2.1e-26 122.9 122 49.2
AT3G58090 Arabidopsis thaliana HOM05D000180 ORTHO05D000099 4.0e-25 118.6 106 55.7
Lj1g0005181 Lotus japonicus HOM05D007382 ORTHO05D009012 1.5e-24 116.7 114 48.2
TPR.G21464 Trifolium pratense HOM05D007382 ORTHO05D009012 1.5e-24 116.7 156 41.7
C04p34300 Brassica napus HOM05D000180 ORTHO05D000099 7.5e-24 114.4 110 50.0
BolC4t24990H Brassica oleracea HOM05D000180 ORTHO05D000099 1.7e-23 113.2 110 50.0
A04p02730 Brassica napus HOM05D000180 ORTHO05D000099 3.2e-22 109.0 110 50.0
BraA04t15999Z Brassica rapa HOM05D000180 ORTHO05D000099 3.2e-22 109.0 110 50.0
CiPaw.15G123900 Carya illinoinensis HOM05D007382 ORTHO05D009012 4.1e-22 108.6 124 44.4
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 7.0e-22 107.8 124 46.0
Os01g0835600 Oryza sativa ssp. japonica HOM05D007382 ORTHO05D009012 4.6e-21 105.1 115 46.1
HPP92_019795 Vanilla planifolia HOM05D007382 ORTHO05D009012 8.6e-20 100.9 120 45.8
VMungo1080G1211 Vigna mungo HOM05D007382 ORTHO05D009012 3.3e-19 99.0 78 52.6
SEGI_34495 Sequoiadendron giganteum HOM05D007382 ORTHO05D009012 2.1e-18 96.3 117 45.3
CDE09G1151 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 5.2e-17 91.7 116 43.1
Lalb_Chr20g0113021 Lupinus albus HOM05D007382 ORTHO05D009012 5.2e-17 91.7 90 47.8
Lalb_Chr25g0289341 Lupinus albus HOM05D007382 ORTHO05D009012 3.4e-16 89.0 90 47.8
CDE12G0689 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 3.9e-12 75.5 80 45.0
ATR0665G317 Amborella trichopoda HOM05D007382 ORTHO05D009012 4.0e-09 65.5 52 59.6
SEGI_03776 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 5.2e-09 65.1 82 46.3
ATR0829G079 Amborella trichopoda HOM05D016889 ORTHO05D026570 8.9e-09 64.3 61 50.8
SMO147G0006 Selaginella moellendorffii HOM05D016889 ORTHO05D026570 1.7e-07 60.1 67 52.2
TAR633G0943 Trochodendron aralioides HOM05D007382 ORTHO05D009012 2.2e-07 59.7 54 51.9
CBR_g41746 Chara braunii HOM05D007382 ORTHO05D009012 2.9e-07 59.3 81 40.7
SEGI_22784 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 2.4e-06 56.2 50 52.0
Pp3c14_21840 Physcomitrium patens HOM05D016889 ORTHO05D009012 3.2e-06 55.8 55 50.9
CBR_g33928 Chara braunii HOM05D001312 ORTHO05D001832 5.4e-06 55.1 77 41.6


User provided reference genes

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