Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G423.7 Capsicum annuum HOM05D005829 ORTHO05D007246 1.3e-97 359.8 186 100.0
PGSC0003DMG400004051 Solanum tuberosum HOM05D005829 ORTHO05D007246 1.2e-74 283.5 190 78.9
Solyc06g069170.4 Solanum lycopersicum HOM05D005829 ORTHO05D007246 8.4e-73 277.3 190 78.4
Sopen06g026440 Solanum pennellii HOM05D005829 ORTHO05D007246 2.5e-72 275.8 190 78.4
Nitab4.5_0011561g0030 Nicotiana tabacum HOM05D005829 ORTHO05D007246 2.3e-70 269.2 197 76.1
Nitab4.5_0010801g0020 Nicotiana tabacum HOM05D005829 ORTHO05D007246 3.0e-70 268.9 197 75.6
Peaxi162Scf00013g00945 Petunia axillaris HOM05D005829 ORTHO05D007246 4.2e-56 221.9 196 67.3
Oeu006380.1 Olea europaea HOM05D005829 ORTHO05D007246 1.3e-49 200.3 200 55.5
Oeu046995.1 Olea europaea HOM05D005829 ORTHO05D007246 3.8e-49 198.7 203 55.2
Cc04_g07210 Coffea canephora HOM05D005829 ORTHO05D007246 9.4e-48 194.1 196 57.1
Lalb_Chr14g0371231 Lupinus albus HOM05D005829 ORTHO05D007246 3.9e-46 188.7 179 55.3
Lsat_1_v5_gn_8_146520 Lactuca sativa HOM05D005829 ORTHO05D007246 6.7e-46 188.0 188 55.3
CANSAT21G0600 Cannabis sativa HOM05D005829 ORTHO05D007246 8.8e-46 187.6 198 52.5
HanXRQChr10g0314971 Helianthus annuus HOM05D005829 ORTHO05D007246 1.5e-45 186.8 184 56.0
TWI15G0782 Tripterygium wilfordii HOM05D005829 ORTHO05D007246 2.0e-45 186.4 173 57.2
arahy.Tifrunner.gnm1.ann1.K96EGP Arachis hypogaea HOM05D005829 ORTHO05D007246 3.3e-45 185.7 195 52.8
QL10p025073 Quercus lobata HOM05D005829 ORTHO05D007246 7.4e-45 184.5 183 51.9
CiPaw.15G129500 Carya illinoinensis HOM05D005829 ORTHO05D007246 2.8e-44 182.6 180 55.6
ECA234G2972 Erigeron canadensis HOM05D005829 ORTHO05D007246 2.8e-44 182.6 194 55.2
Haze_18659 Corylus avellana HOM05D005829 ORTHO05D007246 1.1e-43 180.6 178 53.4
Potri.015G053800 Populus trichocarpa HOM05D005829 ORTHO05D007246 1.1e-43 180.6 202 49.5
MSTRG.11323 Avicennia marina HOM05D005829 ORTHO05D007246 1.8e-43 179.9 201 52.2
Cfa019789 Carpinus fangiana HOM05D005829 ORTHO05D007246 1.8e-43 179.9 179 55.3
Hund02393 Selenicereus undatus HOM05D005829 ORTHO05D007246 5.3e-43 178.3 161 56.5
Dinv36156 Davidia involucrata HOM05D005829 ORTHO05D007246 7.0e-43 177.9 190 52.6
Sabra15G0075500 Salix brachista HOM05D005829 ORTHO05D007246 7.0e-43 177.9 202 50.5
Manes.01G012500 Manihot esculenta HOM05D005829 ORTHO05D007246 9.1e-43 177.6 168 59.5
TAR629G3023 Trochodendron aralioides HOM05D005829 ORTHO05D007246 9.1e-43 177.6 170 56.5
Cpa.g.sc13.3 Carica papaya HOM05D005829 ORTHO05D007246 1.2e-42 177.2 203 51.2
Gorai.006G194900 Gossypium raimondii HOM05D005829 ORTHO05D007246 1.2e-42 177.2 200 51.5
Duzib084G1006 Durio zibethinus HOM05D005829 ORTHO05D007246 1.6e-42 176.8 199 50.8
Gohir.A09G177500 Gossypium hirsutum HOM05D005829 ORTHO05D007246 2.6e-42 176.0 207 49.8
GSVIVG01008273001 Vitis vinifera HOM05D005829 ORTHO05D007246 2.6e-42 176.0 190 51.1
DCAR_023199 Daucus carota HOM05D005829 ORTHO05D007246 3.5e-42 175.6 179 55.9
MD06G1215200 Malus domestica HOM05D005829 ORTHO05D007246 3.5e-42 175.6 180 50.6
CSS0021100 Camellia sinensis var. sinensis HOM05D005829 ORTHO05D007246 4.5e-42 175.3 156 61.5
Gohir.D09G173000 Gossypium hirsutum HOM05D005829 ORTHO05D007246 4.5e-42 175.3 200 51.5
Thecc.03G033800 Theobroma cacao HOM05D005829 ORTHO05D007246 4.5e-42 175.3 199 50.8
Duzib068G0473 Durio zibethinus HOM05D005829 ORTHO05D007246 5.9e-42 174.9 183 54.1
FAN04G2288 Fragaria x ananassa HOM05D005829 ORTHO05D007246 5.9e-42 174.9 189 53.4
Potri.015G054100 Populus trichocarpa HOM05D005829 ORTHO05D007246 7.7e-42 174.5 163 57.7
Atru.chr9.821 Acer truncatum HOM05D005829 ORTHO05D007246 2.2e-41 172.9 174 59.2
FAN13G0492 Fragaria x ananassa HOM05D005829 ORTHO05D007246 5.0e-41 171.8 175 54.9
FAN18G3094 Fragaria x ananassa HOM05D005829 ORTHO05D007246 8.5e-41 171.0 175 55.4
Sc12g0006790 Simmondsia chinensis HOM05D005829 ORTHO05D007246 1.5e-40 170.2 205 48.8
Manes.05G145805 Manihot esculenta HOM05D005829 ORTHO05D007246 1.9e-40 169.9 97 80.4
FAN08G3097 Fragaria x ananassa HOM05D005829 ORTHO05D007246 4.2e-40 168.7 175 54.9
Aqoxy3G00323 Aquilegia oxysepala HOM05D005829 ORTHO05D007246 7.2e-40 167.9 175 54.3
arahy.Tifrunner.gnm1.ann1.SID7TX Arachis hypogaea HOM05D005829 ORTHO05D007246 7.2e-40 167.9 214 47.2
EL10Ac5g11432 Beta vulgaris HOM05D005829 ORTHO05D007246 1.6e-39 166.8 212 48.6
ATR0665G268 Amborella trichopoda HOM05D005829 ORTHO05D007246 2.1e-39 166.4 105 72.4
Prupe.5G220500 Prunus persica HOM05D005829 ORTHO05D007246 2.1e-39 166.4 190 48.9
Migut.I00369 Erythranthe guttata HOM05D005829 ORTHO05D007246 2.7e-39 166.0 152 58.6
PGR083G1885 Punica granatum HOM05D005829 ORTHO05D007246 3.6e-39 165.6 163 55.2
MELO3C017300.2 Cucumis melo HOM05D005829 ORTHO05D007246 8.0e-39 164.5 161 59.6
Ciclev10022208m.g Citrus clementina HOM05D005829 ORTHO05D007246 1.0e-38 164.1 181 51.4
FvH4_5g12290 Fragaria vesca HOM05D005829 ORTHO05D007246 1.4e-38 163.7 168 55.4
FAN18G2130 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.4e-38 163.7 168 55.4
MD14G1226000 Malus domestica HOM05D005829 ORTHO05D007246 1.4e-38 163.7 191 46.6
Actinidia06971 Actinidia chinensis HOM05D005829 ORTHO05D007246 2.3e-38 162.9 167 57.5
Eucgr.K02215 Eucalyptus grandis HOM05D005829 ORTHO05D007246 2.3e-38 162.9 109 72.5
unitig_749.g13417 Utricularia gibba HOM05D005829 ORTHO05D007246 3.0e-38 162.5 107 72.0
Ah.11g045030 Amaranthus hybridus HOM05D005829 ORTHO05D007246 5.2e-38 161.8 99 75.8
CsaV3_1G003750 Cucumis sativus L. HOM05D005829 ORTHO05D007246 9.7e-37 157.5 161 55.9
ClCG06G014890 Citrullus lanatus HOM05D005829 ORTHO05D007246 1.7e-36 156.8 176 51.7
RcHm_v2.0_Chr7g0185261 Rosa chinensis HOM05D005829 ORTHO05D007246 2.2e-36 156.4 153 58.8
Sed0000228 Sechium edule HOM05D005829 ORTHO05D007246 4.8e-36 155.2 171 54.4
PSO478G3740 Papaver somniferum HOM05D005829 ORTHO05D007246 1.1e-35 154.1 99 72.7
PSO017G1947 Papaver somniferum HOM05D005829 ORTHO05D007246 2.4e-35 152.9 195 45.1
HPP92_013263 Vanilla planifolia HOM05D005829 ORTHO05D007246 5.3e-35 151.8 170 50.0
Nn1g06955 Nelumbo nucifera HOM05D005829 ORTHO05D007246 2.0e-34 149.8 179 48.6
CDE05G0659 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 3.5e-34 149.1 94 72.3
HPP92_013214 Vanilla planifolia HOM05D005829 ORTHO05D007246 3.5e-34 149.1 173 50.3
CDE11G0392 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 4.5e-34 148.7 94 72.3
Rhsim13G0208500 Rhododendron simsii HOM05D005829 ORTHO05D007246 1.0e-33 147.5 203 47.8
SGA_v2.0_scaffold25G10988 Striga asiatica HOM05D005829 ORTHO05D007246 1.0e-33 147.5 241 42.3
Os03g0710600 Oryza sativa ssp. japonica HOM05D005829 ORTHO05D007246 1.3e-33 147.1 141 57.4
Zm00001eb216440 Zea mays HOM05D005829 ORTHO05D007246 2.2e-33 146.4 102 73.5
vmacro04041 Vaccinium macrocarpon HOM05D005829 ORTHO05D007246 2.9e-33 146.0 217 45.2
Zm00001eb054790 Zea mays HOM05D005829 ORTHO05D007246 5.0e-33 145.2 102 73.5
THA.LOC104813901 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 6.5e-33 144.8 94 74.5
Carub.0002s2066 Capsella rubella HOM05D005829 ORTHO05D007246 1.9e-32 143.3 96 72.9
CARHR067000 Cardamine hirsuta HOM05D005829 ORTHO05D007246 9.4e-32 141.0 220 46.4
Sp5g29090 Schrenkiella parvula HOM05D005829 ORTHO05D007246 9.4e-32 141.0 96 72.9
C06p33760 Brassica napus HOM05D005829 ORTHO05D007246 2.1e-31 139.8 96 71.9
BolC6t38490H Brassica oleracea HOM05D005829 ORTHO05D007246 2.1e-31 139.8 96 71.9
Thhalv10019131m.g Eutrema salsugineum HOM05D005829 ORTHO05D007246 2.1e-31 139.8 96 71.9
A02p18930 Brassica napus HOM05D005829 ORTHO05D007246 3.6e-31 139.0 189 47.6
BcaC08g45615 Brassica carinata HOM05D005829 ORTHO05D007246 6.1e-31 138.3 96 69.8
A07p29590 Brassica napus HOM05D005829 ORTHO05D007246 6.1e-31 138.3 96 69.8
BraA07t30600Z Brassica rapa HOM05D005829 ORTHO05D007246 6.1e-31 138.3 96 69.8
BcaB03g15734 Brassica carinata HOM05D005829 ORTHO05D007246 8.0e-31 137.9 157 52.9
Lj2g0004175 Lotus japonicus HOM05D005829 ORTHO05D007246 8.0e-31 137.9 186 46.8
BcaB05g24816 Brassica carinata HOM05D005829 ORTHO05D007246 1.0e-30 137.5 104 68.3
BcaB05g24818 Brassica carinata HOM05D005829 ORTHO05D007246 1.0e-30 137.5 104 68.3
BcaC03g15467 Brassica carinata HOM05D005829 ORTHO05D007246 1.0e-30 137.5 173 49.7
C02p31470 Brassica napus HOM05D005829 ORTHO05D007246 1.0e-30 137.5 173 49.7
BolC2t09178H Brassica oleracea HOM05D005829 ORTHO05D007246 1.0e-30 137.5 173 49.7
Aa31LG4G4200 Aethionema arabicum HOM05D005829 ORTHO05D007246 1.8e-30 136.7 104 69.2
AL2G33720 Arabidopsis lyrata HOM05D005829 ORTHO05D007246 3.0e-30 136.0 96 69.8
BraA02t06935Z Brassica rapa HOM05D005829 ORTHO05D007246 6.8e-30 134.8 173 49.1
SEGI_06072 Sequoiadendron giganteum HOM05D005829 ORTHO05D007246 6.8e-30 134.8 90 67.8
Ca_25501_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 3.4e-29 132.5 172 43.0
AT1G73885 Arabidopsis thaliana HOM05D005829 ORTHO05D007246 7.5e-29 131.3 94 67.0
BcaC09g48855 Brassica carinata HOM05D005829 ORTHO05D007246 9.8e-29 131.0 93 69.9
C01p45190 Brassica napus HOM05D005829 ORTHO05D007246 9.8e-29 131.0 93 69.9
BolC1t04492H Brassica oleracea HOM05D005829 ORTHO05D007246 9.8e-29 131.0 93 69.9
Ca_00264_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 4.5e-26 122.1 165 41.2
AagrBONN_evm.TU.Sc2ySwM_228.1174 Anthoceros agrestis HOM05D005829 ORTHO05D007246 2.1e-23 113.2 93 57.0
AagrBONN_evm.TU.Sc2ySwM_228.2224 Anthoceros agrestis HOM05D005829 ORTHO05D007246 2.1e-23 113.2 93 57.0
FAN14G0369 Fragaria x ananassa HOM05D005829 ORTHO05D007246 3.6e-23 112.5 77 66.2
BcaC03g15466 Brassica carinata HOM05D005829 ORTHO05D007246 8.0e-23 111.3 159 45.9
Gohir.A08G094610 Gossypium hirsutum HOM05D005829 ORTHO05D007246 1.0e-22 110.9 130 46.9
TPR.G35237 Trifolium pratense HOM05D005829 ORTHO05D007246 1.4e-22 110.5 87 58.6
Medtr6g084620 Medicago truncatula HOM05D005829 ORTHO05D007246 1.7e-20 103.6 171 39.8
Mapoly0028s0124 Marchantia polymorpha HOM05D005829 ORTHO05D007246 2.4e-19 99.8 84 58.3
Pp3c4_12650 Physcomitrium patens HOM05D005829 ORTHO05D007246 2.5e-16 89.7 87 54.0
Pp3c4_12780 Physcomitrium patens HOM05D005829 ORTHO05D007246 2.5e-16 89.7 87 54.0
AUR62029856 Chenopodium quinoa HOM05D005829 ORTHO05D007246 5.6e-16 88.6 59 72.9
THA.LOC104813291 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 5.6e-16 88.6 67 71.6
AUR62025855 Chenopodium quinoa HOM05D005829 ORTHO05D007246 7.3e-16 88.2 58 74.1
Actinidia24460 Actinidia chinensis HOM05D005829 ORTHO05D007246 1.2e-10 70.9 41 68.3
Nn3g17806 Nelumbo nucifera HOM05D005829 ORTHO05D007246 3.5e-10 69.3 45 57.8
Phvul.004G158500 Phaseolus vulgaris HOM05D005829 ORTHO05D007246 1.0e-09 67.8 135 35.6
SMO241G0040 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 1.5e-08 63.9 50 50.0
SMO232G0029 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 1.9e-08 63.5 53 47.2
COL.COLO4_04672 Corchorus olitorius HOM05D005829 ORTHO05D007246 4.3e-08 62.4 149 32.2
CBR_g29305 Chara braunii HOM05D005829 ORTHO05D007246 2.1e-07 60.1 39 59.0
Glyma.07G090700 Glycine max HOM05D005829 ORTHO05D007246 6.2e-07 58.5 104 34.6
Glyma.09G185300 Glycine max HOM05D005829 ORTHO05D007246 1.1e-06 57.8 113 31.0
FAN22G1271 Fragaria x ananassa HOM05D038641 ORTHO05D035590 1.8e-06 57.0 65 52.3
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 3.1e-06 56.2 96 34.4


User provided reference genes

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