Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G423.18 Capsicum annuum HOM05D006376 ORTHO05D008046 5.7e-141 504.2 251 100.0
Solyc06g069030.3 Solanum lycopersicum HOM05D006376 ORTHO05D008046 6.4e-108 394.4 253 80.6
PGSC0003DMG400028793 Solanum tuberosum HOM05D006376 ORTHO05D008046 1.9e-107 392.9 257 79.8
Sopen06g026320 Solanum pennellii HOM05D006376 ORTHO05D008046 2.7e-106 389.0 253 80.2
Nitab4.5_0001194g0140 Nicotiana tabacum HOM05D006376 ORTHO05D008046 1.6e-103 379.8 231 81.8
Nitab4.5_0012340g0010 Nicotiana tabacum HOM05D006376 ORTHO05D008046 2.1e-103 379.4 255 77.3
Peaxi162Scf00332g00023 Petunia axillaris HOM05D006376 ORTHO05D008046 4.0e-102 375.2 258 77.9
Cc04_g06670 Coffea canephora HOM05D006376 ORTHO05D008046 3.0e-89 332.4 215 73.5
Oeu024338.1 Olea europaea HOM05D006376 ORTHO05D008046 4.0e-86 322.0 213 72.8
MSTRG.4559 Avicennia marina HOM05D006376 ORTHO05D008046 9.9e-85 317.4 258 67.1
COL.COLO4_37647 Corchorus olitorius HOM05D006376 ORTHO05D008046 1.2e-82 310.5 247 63.2
Gohir.D12G268200 Gossypium hirsutum HOM05D006376 ORTHO05D008046 3.5e-82 308.9 249 64.3
Gorai.008G288200 Gossypium raimondii HOM05D006376 ORTHO05D008046 4.6e-82 308.5 249 64.3
Dinv13549 Davidia involucrata HOM05D006376 ORTHO05D008046 1.8e-81 306.6 212 72.6
CiPaw.15G138400 Carya illinoinensis HOM05D006376 ORTHO05D008046 6.7e-81 304.7 239 64.9
CiPaw.15G139000 Carya illinoinensis HOM05D006376 ORTHO05D008046 1.5e-80 303.5 239 64.4
CsaV3_1G004140 Cucumis sativus L. HOM05D006376 ORTHO05D008046 9.6e-80 300.8 243 63.4
DCAR_014774 Daucus carota HOM05D006376 ORTHO05D008046 1.3e-79 300.4 208 71.2
SGA_v2.0_scaffold171G38935 Striga asiatica HOM05D006376 ORTHO05D008046 2.8e-79 299.3 225 69.3
HanXRQChr05g0144491 Helianthus annuus HOM05D006376 ORTHO05D008046 3.7e-79 298.9 245 62.4
Manes.14G168100 Manihot esculenta HOM05D006376 ORTHO05D008046 6.2e-79 298.1 222 68.0
Ciclev10009207m.g Citrus clementina HOM05D006376 ORTHO05D008046 1.1e-78 297.4 216 68.5
Hund02337 Selenicereus undatus HOM05D006376 ORTHO05D008046 1.1e-78 297.4 246 61.8
MELO3C017340.2 Cucumis melo HOM05D006376 ORTHO05D008046 1.4e-78 297.0 214 68.7
Rhsim07G0069700 Rhododendron simsii HOM05D006376 ORTHO05D008046 1.4e-78 297.0 215 69.3
Thecc.03G047000 Theobroma cacao HOM05D006376 ORTHO05D008046 1.4e-78 297.0 246 62.6
Lj9A422G67 Lonicera japonica HOM05D006376 ORTHO05D008046 3.1e-78 295.8 246 63.4
Hma1.2p1_0660F.1_g197700 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 5.3e-78 295.0 206 68.4
RhsimUnG0086600 Rhododendron simsii HOM05D006376 ORTHO05D008046 5.3e-78 295.0 211 70.1
TAR629G1456 Trochodendron aralioides HOM05D006376 ORTHO05D008046 5.3e-78 295.0 257 60.7
Actinidia02655 Actinidia chinensis HOM05D006376 ORTHO05D008046 9.0e-78 294.3 215 68.4
Rhsim07G0070500 Rhododendron simsii HOM05D006376 ORTHO05D008046 1.5e-77 293.5 211 69.7
AUR62033755 Chenopodium quinoa HOM05D006376 ORTHO05D008046 2.0e-77 293.1 222 66.2
PGR083G0770 Punica granatum HOM05D006376 ORTHO05D008046 2.0e-77 293.1 207 68.6
Duzib205G0506 Durio zibethinus HOM05D006376 ORTHO05D008046 2.6e-77 292.7 244 63.1
AL1G30420 Arabidopsis lyrata HOM05D006376 ORTHO05D008046 7.6e-77 291.2 183 78.1
Carub.0001s1773 Capsella rubella HOM05D006376 ORTHO05D008046 7.6e-77 291.2 183 78.7
TWI81G0521 Tripterygium wilfordii HOM05D006376 ORTHO05D008046 7.6e-77 291.2 255 61.2
Lsat_1_v5_gn_8_3561 Lactuca sativa HOM05D006376 ORTHO05D008046 1.3e-76 290.4 249 60.6
Sabra12G0035600 Salix brachista HOM05D006376 ORTHO05D008046 1.3e-76 290.4 213 68.1
Atru.chr9.942 Acer truncatum HOM05D006376 ORTHO05D008046 1.7e-76 290.0 224 66.1
AUR62029950 Chenopodium quinoa HOM05D006376 ORTHO05D008046 1.7e-76 290.0 222 65.3
Potri.012G052300 Populus trichocarpa HOM05D006376 ORTHO05D008046 2.2e-76 289.7 213 67.1
QL10p027316 Quercus lobata HOM05D006376 ORTHO05D008046 2.2e-76 289.7 251 61.8
ECA233G1742 Erigeron canadensis HOM05D006376 ORTHO05D008046 3.8e-76 288.9 215 68.8
Prupe.5G228200 Prunus persica HOM05D006376 ORTHO05D008046 8.4e-76 287.7 249 60.6
THA.LOC104813912 Tarenaya hassleriana HOM05D006376 ORTHO05D008046 1.1e-75 287.3 184 75.5
Nn3g18015 Nelumbo nucifera HOM05D006376 ORTHO05D008046 1.9e-75 286.6 245 59.6
A08p30580 Brassica napus HOM05D006376 ORTHO05D008046 2.5e-75 286.2 184 76.6
CARHR018640 Cardamine hirsuta HOM05D006376 ORTHO05D008046 2.5e-75 286.2 179 78.2
VMungo0251G1463 Vigna mungo HOM05D006376 ORTHO05D008046 2.5e-75 286.2 230 61.7
C08p18330 Brassica napus HOM05D006376 ORTHO05D008046 5.5e-75 285.0 184 76.6
BolC8t49467H Brassica oleracea HOM05D006376 ORTHO05D008046 5.5e-75 285.0 184 76.6
BraA08t34989Z Brassica rapa HOM05D000280 ORTHO05D004091 5.5e-75 285.0 177 78.5
CANSAT21G0790 Cannabis sativa HOM05D006376 ORTHO05D008046 5.5e-75 285.0 212 67.5
Thhalv10008687m.g Eutrema salsugineum HOM05D006376 ORTHO05D008046 7.1e-75 284.6 184 75.5
FAN08G1323 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.2e-74 283.9 241 62.2
GSVIVG01008377001 Vitis vinifera HOM05D006376 ORTHO05D008046 1.6e-74 283.5 212 66.0
Psat7g004120 Pisum sativum HOM05D006376 ORTHO05D008046 2.1e-74 283.1 248 60.1
FvH4_5g16950 Fragaria vesca HOM05D006376 ORTHO05D008046 2.7e-74 282.7 241 62.2
FAN18G1549 Fragaria x ananassa HOM05D006376 ORTHO05D008046 2.7e-74 282.7 241 62.2
AT1G18060 Arabidopsis thaliana HOM05D006376 ORTHO05D008046 7.9e-74 281.2 179 76.5
vmacro17793 Vaccinium macrocarpon HOM05D006376 ORTHO05D008046 7.9e-74 281.2 253 60.1
Glyma.05G243300 Glycine max HOM05D006376 ORTHO05D008046 1.0e-73 280.8 206 66.5
RcHm_v2.0_Chr7g0179071 Rosa chinensis HOM05D006376 ORTHO05D008046 1.0e-73 280.8 248 61.7
Phvul.002G327000 Phaseolus vulgaris HOM05D006376 ORTHO05D008046 1.8e-73 280.0 207 65.2
FAN04G0856 Fragaria x ananassa HOM05D006376 ORTHO05D008046 2.3e-73 279.6 241 61.4
TPR.G12760 Trifolium pratense HOM05D006376 ORTHO05D008046 2.3e-73 279.6 207 64.7
Glyma.08G051100 Glycine max HOM05D006376 ORTHO05D008046 3.0e-73 279.3 207 66.2
arahy.Tifrunner.gnm1.ann1.5Y9SE5 Arachis hypogaea HOM05D006376 ORTHO05D008046 3.9e-73 278.9 208 66.3
FAN13G1861 Fragaria x ananassa HOM05D006376 ORTHO05D008046 6.7e-73 278.1 241 61.4
Haze_18787 Corylus avellana HOM05D006376 ORTHO05D008046 1.5e-72 276.9 176 73.9
Sc04g0003270 Simmondsia chinensis HOM05D006376 ORTHO05D008046 1.9e-72 276.6 176 74.4
Cpa.g.sc3.442 Carica papaya HOM05D006376 ORTHO05D008046 2.5e-72 276.2 254 59.1
arahy.Tifrunner.gnm1.ann1.CZ5T9B Arachis hypogaea HOM05D006376 ORTHO05D008046 3.3e-72 275.8 207 66.2
Eucgr.B00851 Eucalyptus grandis HOM05D006376 ORTHO05D008046 9.6e-72 274.2 219 63.0
Medtr8g106690 Medicago truncatula HOM05D006376 ORTHO05D008046 9.6e-72 274.2 209 65.1
Lalb_Chr09g0330601 Lupinus albus HOM05D006376 ORTHO05D008046 2.8e-71 272.7 215 62.8
Cfa019704 Carpinus fangiana HOM05D006376 ORTHO05D008046 3.7e-71 272.3 179 71.5
Lj4g0006852 Lotus japonicus HOM05D006376 ORTHO05D008046 6.2e-71 271.6 244 59.4
Aqoxy3G03987 Aquilegia oxysepala HOM05D006376 ORTHO05D008046 3.1e-70 269.2 221 61.5
EL10Ac5g11519 Beta vulgaris HOM05D006376 ORTHO05D008046 3.4e-69 265.8 211 64.0
BcaC07g38909 Brassica carinata HOM05D006376 ORTHO05D008046 1.3e-68 263.8 161 78.3
MBI16_g21168_MAGBIO Magnolia biondii HOM05D006376 ORTHO05D008046 1.7e-68 263.5 206 63.1
ATR0691G291 Amborella trichopoda HOM05D006376 ORTHO05D008046 2.2e-68 263.1 182 71.4
ClCG06G014480 Citrullus lanatus HOM05D006376 ORTHO05D008046 8.4e-68 261.2 250 55.6
Aa31LG6G2990 Aethionema arabicum HOM05D006376 ORTHO05D008046 1.4e-67 260.4 207 62.3
Zm00001eb334810 Zea mays HOM05D006376 ORTHO05D008046 2.5e-67 259.6 249 57.0
Os01g0120500 Oryza sativa ssp. japonica HOM05D006376 ORTHO05D008046 5.5e-67 258.5 176 68.8
PSO717G0073 Papaver somniferum HOM05D006376 ORTHO05D008046 1.2e-66 257.3 179 68.2
Duzib084G1315 Durio zibethinus HOM05D006376 ORTHO05D008046 6.1e-66 255.0 212 57.5
PSO675G4918 Papaver somniferum HOM05D006376 ORTHO05D008046 6.1e-66 255.0 179 67.6
HPP92_000150 Vanilla planifolia HOM05D006376 ORTHO05D008046 2.3e-65 253.1 175 69.1
Ca_17222_v3 Cicer arietinum L. HOM05D006376 ORTHO05D008046 3.9e-65 252.3 164 72.0
Migut.D01443 Erythranthe guttata HOM05D006376 ORTHO05D008046 8.7e-65 251.1 177 70.1
CDE03G0312 Ceratophyllum demersum HOM05D006376 ORTHO05D008046 1.1e-64 250.8 234 56.0
Sp1g16080 Schrenkiella parvula HOM05D006376 ORTHO05D008046 9.7e-64 247.7 148 76.4
Lj3g0018404 Lotus japonicus HOM05D006376 ORTHO05D008046 6.3e-63 245.0 178 67.4
Gohir.A12G267700 Gossypium hirsutum HOM05D006376 ORTHO05D008046 5.0e-60 235.3 247 53.8
Pp3c8_21790 Physcomitrium patens HOM05D006376 ORTHO05D008046 2.0e-56 223.4 185 59.5
SEGI_27865 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 3.3e-56 222.6 197 54.8
unitig_21.g20431 Utricularia gibba HOM05D006376 ORTHO05D008046 1.3e-55 220.7 194 61.9
AagrBONN_evm.TU.Sc2ySwM_340.32 Anthoceros agrestis HOM05D006376 ORTHO05D008046 1.8e-54 216.9 186 55.4
SMO116G0316 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 7.9e-50 201.4 237 48.1
SMO164G0083 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 3.3e-48 196.1 181 55.8
Mapoly0001s0324 Marchantia polymorpha HOM05D006376 ORTHO05D008046 2.2e-47 193.4 248 42.7
MD06G1223100 Malus domestica HOM05D006376 ORTHO05D008046 1.1e-46 191.0 122 72.1
SEGI_30520 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 4.8e-31 139.0 95 63.2
MD14G1232300 Malus domestica HOM05D006376 ORTHO05D008046 2.2e-28 130.2 152 50.7
Thecc.03G047400 Theobroma cacao HOM05D006376 ORTHO05D008046 5.0e-28 129.0 149 53.7
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 6.8e-25 118.6 173 38.2
Rhsim07G0070600 Rhododendron simsii HOM05D006376 ORTHO05D008046 4.4e-24 115.9 107 57.9
Cre09.g401350 Chlamydomonas reinhardtii HOM05D006376 ORTHO05D008046 2.0e-21 107.1 176 35.8
Hma1.2p1_0660F.1_g197690 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 3.5e-21 106.3 109 50.5
arahy.Tifrunner.gnm1.ann1.VLX8JM Arachis hypogaea HOM05D006376 ORTHO05D008046 4.1e-14 82.8 123 46.3
arahy.Tifrunner.gnm1.ann1.8TB400 Arachis hypogaea HOM05D006376 ORTHO05D008046 5.4e-14 82.4 85 55.3
arahy.Tifrunner.gnm1.ann1.FQ3MGU Arachis hypogaea HOM05D006376 ORTHO05D008046 9.2e-14 81.6 84 52.4
arahy.Tifrunner.gnm1.ann1.Y3IZ58 Arachis hypogaea HOM05D006376 ORTHO05D008046 1.2e-13 81.3 85 54.1
SEGI_17791 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 3.5e-13 79.7 62 61.3
arahy.Tifrunner.gnm1.ann1.W819WZ Arachis hypogaea HOM05D006376 ORTHO05D008046 5.9e-13 79.0 85 52.9
SMO137G0132 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 4.3e-11 72.8 92 48.9
SMO170G0025 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 3.6e-10 69.7 61 60.7
arahy.Tifrunner.gnm1.ann1.XS5A0Y Arachis hypogaea HOM05D006376 ORTHO05D008046 2.3e-09 67.0 76 50.0
Dinv17636 Davidia involucrata HOM05D012663 ORTHO05D004533 5.2e-09 65.9 133 38.3
Cre12.g534250 Chlamydomonas reinhardtii HOM05D006376 ORTHO05D147105 9.2e-06 55.1 170 26.5


User provided reference genes

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