Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G422.6 Capsicum annuum HOM05D002693 ORTHO05D008074 4.9e-31 137.1 67 100.0
Nitab4.5_0002531g0130 Nicotiana tabacum HOM05D002693 ORTHO05D008074 1.3e-18 95.9 49 87.8
Peaxi162Scf00089g00838 Petunia axillaris HOM05D002693 ORTHO05D008074 1.3e-18 95.9 49 87.8
Sopen03g030730 Solanum pennellii HOM05D002693 ORTHO05D008074 2.1e-18 95.1 49 87.8
CAN.G472.45 Capsicum annuum HOM05D002693 ORTHO05D008074 3.6e-18 94.4 49 83.7
PGSC0003DMG400015165 Solanum tuberosum HOM05D002693 ORTHO05D008074 4.8e-18 94.0 49 85.7
Solyc03g111610.3 Solanum lycopersicum HOM05D002693 ORTHO05D008074 6.2e-18 93.6 49 85.7
Nitab4.5_0001360g0120 Nicotiana tabacum HOM05D002693 ORTHO05D008074 8.1e-18 93.2 49 85.7
Nn4g22488 Nelumbo nucifera HOM05D002693 ORTHO05D008074 2.4e-17 91.7 49 83.7
GSVIVG01007572001 Vitis vinifera HOM05D002693 ORTHO05D008074 2.4e-17 91.7 49 83.7
Oeu053509.1 Olea europaea HOM05D002693 ORTHO05D008074 3.1e-17 91.3 49 83.7
Glyma.04G191700 Glycine max HOM05D002693 ORTHO05D008074 4.0e-17 90.9 49 83.7
Glyma.06G174200 Glycine max HOM05D002693 ORTHO05D008074 4.0e-17 90.9 49 83.7
Gohir.A09G244700 Gossypium hirsutum HOM05D002693 ORTHO05D008074 4.0e-17 90.9 49 83.7
AT3G48420 Arabidopsis thaliana HOM05D002693 ORTHO05D008074 5.3e-17 90.5 49 81.6
CiPaw.11G013400 Carya illinoinensis HOM05D002693 ORTHO05D008074 5.3e-17 90.5 49 81.6
BcaB01g00813 Brassica carinata HOM05D002693 ORTHO05D008074 6.9e-17 90.1 49 81.6
Cpa.g.sc4.47 Carica papaya HOM05D002693 ORTHO05D008074 6.9e-17 90.1 49 81.6
ClCG06G017610 Citrullus lanatus HOM05D002693 ORTHO05D008074 6.9e-17 90.1 49 81.6
MELO3C026235.2 Cucumis melo HOM05D002693 ORTHO05D008074 6.9e-17 90.1 49 81.6
Dinv38484 Davidia involucrata HOM05D002693 ORTHO05D008074 6.9e-17 90.1 49 81.6
Rhsim12G0171100 Rhododendron simsii HOM05D002693 ORTHO05D008074 6.9e-17 90.1 49 81.6
THA.LOC104821498 Tarenaya hassleriana HOM05D002693 ORTHO05D008074 6.9e-17 90.1 49 81.6
Duzib205G0413 Durio zibethinus HOM05D002693 ORTHO05D008074 9.0e-17 89.7 49 81.6
Aqoxy3G01325 Aquilegia oxysepala HOM05D002693 ORTHO05D008074 1.2e-16 89.4 49 81.6
Manes.06G113900 Manihot esculenta HOM05D002693 ORTHO05D008074 1.5e-16 89.0 49 79.6
Phvul.009G169900 Phaseolus vulgaris HOM05D002693 ORTHO05D008074 1.5e-16 89.0 50 80.0
VMungo1309G0913 Vigna mungo HOM05D002693 ORTHO05D008074 1.5e-16 89.0 49 81.6
Actinidia36776 Actinidia chinensis HOM05D002693 ORTHO05D008074 2.0e-16 88.6 49 79.6
CsaV3_1G000830 Cucumis sativus L. HOM05D002693 ORTHO05D008074 2.0e-16 88.6 49 79.6
Eucgr.K02765 Eucalyptus grandis HOM05D002693 ORTHO05D008074 2.0e-16 88.6 49 79.6
Potri.015G088500 Populus trichocarpa HOM05D002693 ORTHO05D008074 2.0e-16 88.6 49 81.6
Sabra15G0111400 Salix brachista HOM05D002693 ORTHO05D008074 2.0e-16 88.6 49 81.6
MSTRG.11525 Avicennia marina HOM05D002693 ORTHO05D008074 2.6e-16 88.2 49 79.6
BcaB01g00815 Brassica carinata HOM05D002693 ORTHO05D008074 2.6e-16 88.2 49 79.6
C08p23410 Brassica napus HOM05D002693 ORTHO05D008074 2.6e-16 88.2 49 79.6
BraA06t25011Z Brassica rapa HOM05D002693 ORTHO05D008074 2.6e-16 88.2 49 79.6
Cc04_g10650 Coffea canephora HOM05D002693 ORTHO05D008074 2.6e-16 88.2 49 79.6
PGR044G0360 Punica granatum HOM05D002693 ORTHO05D008074 2.6e-16 88.2 49 77.6
QL10p005573 Quercus lobata HOM05D002693 ORTHO05D008074 2.6e-16 88.2 49 79.6
BcaB02g10654 Brassica carinata HOM05D002693 ORTHO05D008074 3.4e-16 87.8 48 81.2
CANSAT80G0417 Cannabis sativa HOM05D002693 ORTHO05D008074 3.4e-16 87.8 49 81.6
Carub.0005s1458 Capsella rubella HOM05D002693 ORTHO05D008074 3.4e-16 87.8 49 79.6
Ciclev10020897m.g Citrus clementina HOM05D002693 ORTHO05D008074 3.4e-16 87.8 49 79.6
Thhalv10010540m.g Eutrema salsugineum HOM05D002693 ORTHO05D008074 3.4e-16 87.8 49 79.6
Thecc.03G121000 Theobroma cacao HOM05D002693 ORTHO05D008074 3.4e-16 87.8 48 81.2
BcaC01g02341 Brassica carinata HOM05D002693 ORTHO05D008074 4.5e-16 87.4 48 83.3
BcaNung06062 Brassica carinata HOM05D002693 ORTHO05D008074 4.5e-16 87.4 48 83.3
C03p66400 Brassica napus HOM05D002693 ORTHO05D008074 4.5e-16 87.4 48 83.3
BolC3t18913H Brassica oleracea HOM05D002693 ORTHO05D008074 4.5e-16 87.4 48 83.3
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 4.5e-16 87.4 49 81.6
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 4.5e-16 87.4 49 81.6
Medtr3g075230 Medicago truncatula HOM05D002693 ORTHO05D008074 4.5e-16 87.4 49 81.6
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 4.5e-16 87.4 49 81.6
Sed0019566 Sechium edule HOM05D002693 ORTHO05D008074 4.5e-16 87.4 49 79.6
TPR.G38598 Trifolium pratense HOM05D002693 ORTHO05D008074 4.5e-16 87.4 49 81.6
A06p19280 Brassica napus HOM05D002693 ORTHO05D008074 5.8e-16 87.0 49 77.6
Lj1g0007454 Lotus japonicus HOM05D002693 ORTHO05D008074 5.8e-16 87.0 49 81.6
Sp5g13640 Schrenkiella parvula HOM05D002693 ORTHO05D008074 5.8e-16 87.0 49 77.6
BolC8t49969H Brassica oleracea HOM05D002693 ORTHO05D008074 7.6e-16 86.7 49 79.6
DCAR_016425 Daucus carota HOM05D002693 ORTHO05D008074 7.6e-16 86.7 48 81.2
Lalb_Chr11g0069751 Lupinus albus HOM05D002693 ORTHO05D008074 7.6e-16 86.7 49 79.6
ECA246G3621 Erigeron canadensis HOM05D002693 ORTHO05D008074 9.9e-16 86.3 47 80.9
A06p27660 Brassica napus HOM05D002693 ORTHO05D008074 1.3e-15 85.9 48 81.2
Migut.O00226 Erythranthe guttata HOM05D002693 ORTHO05D008074 1.3e-15 85.9 47 78.7
Atru.chr9.1052 Acer truncatum HOM05D002693 ORTHO05D008074 1.7e-15 85.5 49 75.5
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 2.2e-15 85.1 49 79.6
EL10Ac7g18055 Beta vulgaris HOM05D002693 ORTHO05D008074 2.2e-15 85.1 49 75.5
AUR62025747 Chenopodium quinoa HOM05D002693 ORTHO05D008074 2.2e-15 85.1 49 75.5
unitig_0.g1407 Utricularia gibba HOM05D002693 ORTHO05D008074 2.2e-15 85.1 49 75.5
Aa31LG4G16990 Aethionema arabicum HOM05D002693 ORTHO05D008074 2.9e-15 84.7 49 75.5
AUR62001263 Chenopodium quinoa HOM05D002693 ORTHO05D008074 2.9e-15 84.7 49 75.5
HanXRQChr05g0156121 Helianthus annuus HOM05D002693 ORTHO05D008074 2.9e-15 84.7 48 79.2
Cfa018903 Carpinus fangiana HOM05D002693 ORTHO05D008074 3.8e-15 84.3 49 77.6
Haze_07289 Corylus avellana HOM05D005390 ORTHO05D007086 3.8e-15 84.3 49 77.6
arahy.Tifrunner.gnm1.ann1.3ZI7DD Arachis hypogaea HOM05D002693 ORTHO05D008074 4.9e-15 84.0 49 77.6
Lsat_1_v5_gn_5_13101 Lactuca sativa HOM05D002693 ORTHO05D008074 4.9e-15 84.0 48 77.1
SalBow5G1929 Salvia bowleyana HOM05D002693 ORTHO05D008074 4.9e-15 84.0 48 79.2
TAR622G1430 Trochodendron aralioides HOM05D002693 ORTHO05D008074 4.9e-15 84.0 49 75.5
Zm00001eb113090 Zea mays HOM05D002693 ORTHO05D008074 3.2e-14 81.3 49 73.5
CSS0044980 Camellia sinensis var. sinensis HOM05D002693 ORTHO05D008074 4.2e-14 80.9 46 78.3
Hund18531 Selenicereus undatus HOM05D002693 ORTHO05D008074 5.5e-14 80.5 47 74.5
FvH4_5g07070 Fragaria vesca HOM05D002693 ORTHO05D008074 7.1e-14 80.1 49 79.6
FAN08G3291 Fragaria x ananassa HOM05D002693 ORTHO05D008074 7.1e-14 80.1 49 79.6
FAN13G1374 Fragaria x ananassa HOM05D002693 ORTHO05D008074 7.1e-14 80.1 49 79.6
FAN18G1738 Fragaria x ananassa HOM05D002693 ORTHO05D008074 7.1e-14 80.1 49 79.6
CDE06G2530 Ceratophyllum demersum HOM05D002693 ORTHO05D008074 9.3e-14 79.7 48 72.9
Lj5A101T102 Lonicera japonica HOM05D002693 ORTHO05D008074 9.3e-14 79.7 49 73.5
MBI08_g18358_MAGBIO Magnolia biondii HOM05D002693 ORTHO05D008074 9.3e-14 79.7 50 76.0
Os03g0565200 Oryza sativa ssp. japonica HOM05D002693 ORTHO05D008074 1.2e-13 79.3 49 69.4
ATR0824G037 Amborella trichopoda HOM05D002693 ORTHO05D008074 1.6e-13 79.0 49 67.3
FAN04G2647 Fragaria x ananassa HOM05D002693 ORTHO05D008074 2.1e-13 78.6 49 77.6
RcHm_v2.0_Chr7g0191481 Rosa chinensis HOM05D002693 ORTHO05D008074 2.1e-13 78.6 49 77.6
Potri.014G003916 Populus trichocarpa HOM05D002693 ORTHO05D008074 2.7e-13 78.2 45 77.8
Prupe.5G159800 Prunus persica HOM05D002693 ORTHO05D008074 4.6e-13 77.4 49 77.6
MD14G1165800 Malus domestica HOM05D002693 ORTHO05D008074 6.0e-13 77.0 49 75.5
MD06G1160600 Malus domestica HOM05D002693 ORTHO05D008074 7.9e-13 76.6 45 75.6
HPP92_010508 Vanilla planifolia HOM05D002693 ORTHO05D008074 7.9e-13 76.6 49 67.3
BcaC07g39324 Brassica carinata HOM05D002693 ORTHO05D008074 1.0e-12 76.3 46 73.9
COL.COLO4_04553 Corchorus olitorius HOM05D002693 ORTHO05D008074 2.3e-12 75.1 41 80.5
vmacro16697 Vaccinium macrocarpon HOM05D002693 ORTHO05D008074 2.3e-12 75.1 40 82.5
Prupe.5G159700 Prunus persica HOM05D002693 ORTHO05D008074 3.9e-12 74.3 45 75.6
TWI23G0591 Tripterygium wilfordii HOM05D002693 ORTHO05D008074 8.7e-12 73.2 42 78.6
PSO017G1659 Papaver somniferum HOM05D002693 ORTHO05D008074 4.3e-11 70.9 42 73.8
PSO478G4803 Papaver somniferum HOM05D002693 ORTHO05D008074 5.6e-11 70.5 42 71.4
Atru.chr9.991 Acer truncatum HOM05D002706 ORTHO05D003253 9.6e-11 69.7 50 66.0
Ah.15g095420 Amaranthus hybridus HOM05D002693 ORTHO05D008074 2.1e-10 68.6 45 66.7
SEGI_18096 Sequoiadendron giganteum HOM05D002693 ORTHO05D008074 2.8e-10 68.2 49 59.2
CBR_g22462 Chara braunii HOM05D002693 ORTHO05D008074 3.1e-09 64.7 36 75.0
Pp3c10_2693 Physcomitrium patens HOM05D002693 ORTHO05D008074 6.9e-09 63.5 49 59.2
Mapoly0082s0060 Marchantia polymorpha HOM05D002693 ORTHO05D008074 9.0e-09 63.2 43 67.4
AagrBONN_evm.TU.Sc2ySwM_362.2434 Anthoceros agrestis HOM05D002693 ORTHO05D008074 1.3e-07 59.3 44 59.1
SGA_v2.0_scaffold90G27784 Striga asiatica HOM05D002693 ORTHO05D008074 1.7e-07 58.9 32 78.1
TWI09G0096 Tripterygium wilfordii HOM05D002693 ORTHO05D008074 1.9e-06 55.5 44 63.6


User provided reference genes

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