Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G419.13 Capsicum annuum HOM05D005654 ORTHO05D006438 5.0e-97 357.8 191 100.0
Solyc04g008800.3 Solanum lycopersicum HOM05D005654 ORTHO05D006438 1.1e-78 297.0 191 85.3
Sopen04g003980 Solanum pennellii HOM05D005654 ORTHO05D006438 2.0e-77 292.7 191 84.3
PGSC0003DMG400025306 Solanum tuberosum HOM05D005654 ORTHO05D006438 7.6e-77 290.8 191 84.3
Nitab4.5_0002707g0030 Nicotiana tabacum HOM05D005654 ORTHO05D006438 1.7e-73 279.6 192 81.8
Nitab4.5_0007445g0010 Nicotiana tabacum HOM05D005654 ORTHO05D006438 6.6e-73 277.7 191 81.7
Peaxi162Scf00329g00119 Petunia axillaris HOM05D005654 ORTHO05D006438 1.8e-65 253.1 191 77.0
Hma1.2p1_1114F.1_g258780 Hydrangea macrophylla HOM05D005654 ORTHO05D006438 5.3e-62 241.5 191 70.7
Actinidia26105 Actinidia chinensis HOM05D005654 ORTHO05D006438 7.1e-59 231.1 194 71.1
Thecc.01G026300 Theobroma cacao HOM05D005654 ORTHO05D006438 6.0e-58 228.0 191 68.6
Dinv33576 Davidia involucrata HOM05D005654 ORTHO05D006438 7.9e-58 227.6 183 69.9
CSS0048601 Camellia sinensis var. sinensis HOM05D005654 ORTHO05D006438 2.3e-57 226.1 193 69.9
Lj2A460T79 Lonicera japonica HOM05D005654 ORTHO05D006438 2.3e-57 226.1 191 69.6
Cc07_g10180 Coffea canephora HOM05D005654 ORTHO05D006438 8.7e-57 224.2 197 69.0
MSTRG.23266 Avicennia marina HOM05D005654 ORTHO05D006438 1.9e-56 223.0 192 68.8
Migut.H02503 Erythranthe guttata HOM05D005654 ORTHO05D006438 7.4e-56 221.1 188 68.6
Gohir.A11G179400 Gossypium hirsutum HOM05D005654 ORTHO05D006438 1.6e-55 219.9 191 68.6
QL08p063081 Quercus lobata HOM05D005654 ORTHO05D006438 3.1e-54 215.7 190 64.2
SalBow8G3171 Salvia bowleyana HOM05D005654 ORTHO05D006438 6.9e-54 214.5 193 65.8
Gohir.D11G187100 Gossypium hirsutum HOM05D005654 ORTHO05D006438 1.2e-53 213.8 191 65.4
Gorai.007G199000 Gossypium raimondii HOM05D005654 ORTHO05D006438 2.0e-53 213.0 191 65.4
ClCG09G019610 Citrullus lanatus HOM05D005654 ORTHO05D006438 2.6e-53 212.6 189 63.5
COL.COLO4_21992 Corchorus olitorius HOM05D005654 ORTHO05D006438 5.8e-53 211.5 191 64.9
THA.LOC104819191 Tarenaya hassleriana HOM05D005654 ORTHO05D006438 1.0e-52 210.7 191 62.8
QL06p034798 Quercus lobata HOM05D005654 ORTHO05D006438 1.7e-52 209.9 189 65.6
QL10p007390 Quercus lobata HOM05D005654 ORTHO05D006438 1.7e-52 209.9 189 65.6
TAR381G0206 Trochodendron aralioides HOM05D005654 ORTHO05D006438 4.9e-52 208.4 190 62.6
TWI60G0108 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 1.9e-51 206.5 192 65.6
AL5G31430 Arabidopsis lyrata HOM05D005654 ORTHO05D006438 2.5e-51 206.1 194 64.4
CiPaw.08G137200 Carya illinoinensis HOM05D005654 ORTHO05D006438 2.5e-51 206.1 191 63.9
CsaV3_5G027780 Cucumis sativus L. HOM05D005654 ORTHO05D006438 5.5e-51 204.9 189 63.0
Thhalv10010748m.g Eutrema salsugineum HOM05D005654 ORTHO05D006438 7.1e-51 204.5 192 63.0
Oeu021744.2 Olea europaea HOM05D005654 ORTHO05D006438 7.1e-51 204.5 240 55.0
Lj3g0016616 Lotus japonicus HOM05D005654 ORTHO05D006438 2.1e-50 203.0 192 64.1
Haze_03832 Corylus avellana HOM05D005654 ORTHO05D006438 2.7e-50 202.6 191 62.3
MELO3C005244.2 Cucumis melo HOM05D005654 ORTHO05D006438 2.7e-50 202.6 189 61.4
AT3G51010 Arabidopsis thaliana HOM05D005654 ORTHO05D006438 3.5e-50 202.2 195 61.5
Lsat_1_v5_gn_9_115780 Lactuca sativa HOM05D005654 ORTHO05D006438 4.6e-50 201.8 189 63.0
Lalb_Chr06g0172541 Lupinus albus HOM05D005654 ORTHO05D006438 6.0e-50 201.4 199 60.8
Sed0005955 Sechium edule HOM05D005654 ORTHO05D006438 1.8e-49 199.9 189 60.8
RcHm_v2.0_Chr6g0277811 Rosa chinensis HOM05D005654 ORTHO05D006438 2.3e-49 199.5 191 61.8
CANSAT01G3286 Cannabis sativa HOM05D005654 ORTHO05D006438 3.9e-49 198.7 191 61.8
Glyma.13G002400 Glycine max HOM05D005654 ORTHO05D006438 5.1e-49 198.4 199 63.3
Lj5g0021075 Lotus japonicus HOM05D005654 ORTHO05D006438 6.7e-49 198.0 189 63.0
Nn1g05784 Nelumbo nucifera HOM05D005654 ORTHO05D006438 1.5e-48 196.8 189 60.8
Carub.0005s1741 Capsella rubella HOM05D005654 ORTHO05D006438 3.3e-48 195.7 195 60.5
Manes.02G099200 Manihot esculenta HOM05D005654 ORTHO05D006438 3.3e-48 195.7 195 62.1
Sp5g11200 Schrenkiella parvula HOM05D005654 ORTHO05D006438 4.3e-48 195.3 193 61.7
Ca_14022_v3 Cicer arietinum L. HOM05D005654 ORTHO05D006438 5.7e-48 194.9 190 62.1
FvH4_2g15150 Fragaria vesca HOM05D005654 ORTHO05D006438 5.7e-48 194.9 191 61.3
FAN07G1349 Fragaria x ananassa HOM05D005654 ORTHO05D006438 5.7e-48 194.9 191 59.7
Glyma.16G220800 Glycine max HOM05D005654 ORTHO05D006438 2.1e-47 193.0 189 62.4
Glyma.20G066700 Glycine max HOM05D005654 ORTHO05D006438 2.1e-47 193.0 192 63.5
Sabra07G0015400 Salix brachista HOM05D005654 ORTHO05D006438 2.1e-47 193.0 195 59.0
GSVIVG01018856001 Vitis vinifera HOM05D005654 ORTHO05D006438 2.1e-47 193.0 192 63.0
FAN17G0825 Fragaria x ananassa HOM05D005654 ORTHO05D006438 4.8e-47 191.8 191 59.2
Manes.01G140500 Manihot esculenta HOM05D005654 ORTHO05D006438 4.8e-47 191.8 197 61.4
A09p44110 Brassica napus HOM05D000363 ORTHO05D006438 6.3e-47 191.4 192 60.4
BcaC06g33063 Brassica carinata HOM05D005654 ORTHO05D006438 8.2e-47 191.0 193 58.0
Eucgr.H02778 Eucalyptus grandis HOM05D005654 ORTHO05D006438 8.2e-47 191.0 190 61.6
BraA09t39870Z Brassica rapa HOM05D005654 ORTHO05D006438 1.1e-46 190.7 193 60.1
ECA248G0981 Erigeron canadensis HOM05D005654 ORTHO05D006438 1.4e-46 190.3 189 61.4
Phvul.010G058900 Phaseolus vulgaris HOM05D005654 ORTHO05D006438 1.8e-46 189.9 186 63.4
FAN22G0080 Fragaria x ananassa HOM05D005654 ORTHO05D006438 4.1e-46 188.7 191 58.1
BraA03t13914Z Brassica rapa HOM05D000363 ORTHO05D005000 5.3e-46 188.3 192 58.3
PSO170G2173 Papaver somniferum HOM05D005654 ORTHO05D006438 6.9e-46 188.0 185 61.1
VMungo0331G0515 Vigna mungo HOM05D005654 ORTHO05D006438 6.9e-46 188.0 182 62.6
BcaNung00403 Brassica carinata HOM05D005654 ORTHO05D006438 9.0e-46 187.6 192 59.9
A03p48070 Brassica napus HOM05D000363 ORTHO05D005000 1.5e-45 186.8 192 57.8
C07p46090 Brassica napus HOM05D000363 ORTHO05D005000 2.6e-45 186.0 191 59.7
BolC7t45125H Brassica oleracea HOM05D000363 ORTHO05D005000 2.6e-45 186.0 191 59.7
Prupe.8G013400 Prunus persica HOM05D005654 ORTHO05D006438 3.4e-45 185.7 191 58.6
FvH4_4g16440 Fragaria vesca HOM05D005654 ORTHO05D006438 4.5e-45 185.3 193 59.1
FAN12G4326 Fragaria x ananassa HOM05D005654 ORTHO05D006438 4.5e-45 185.3 193 59.1
BcaC07g39579 Brassica carinata HOM05D005654 ORTHO05D006438 5.9e-45 184.9 193 58.5
C08p26310 Brassica napus HOM05D005654 ORTHO05D006438 5.9e-45 184.9 193 58.5
PSO528G0264 Papaver somniferum HOM05D005654 ORTHO05D006438 7.6e-45 184.5 190 60.5
Lj4A211T64 Lonicera japonica HOM05D005654 ORTHO05D006438 1.3e-44 183.7 202 58.9
MD05G1010700 Malus domestica HOM05D005654 ORTHO05D006438 1.3e-44 183.7 192 59.9
BolC8t50249H Brassica oleracea HOM05D005654 ORTHO05D006438 1.7e-44 183.3 193 58.0
HanXRQChr10g0278901 Helianthus annuus HOM05D005654 ORTHO05D006438 1.7e-44 183.3 184 60.9
PSO339G4156 Papaver somniferum HOM05D005654 ORTHO05D006438 1.7e-44 183.3 187 59.9
Aa31LG4G19130 Aethionema arabicum HOM05D005654 ORTHO05D006438 2.9e-44 182.6 192 57.3
BcaB01g00554 Brassica carinata HOM05D005654 ORTHO05D006438 2.9e-44 182.6 192 57.8
Dinv33575 Davidia involucrata HOM05D005654 ORTHO05D006438 2.9e-44 182.6 121 81.0
PGR119G1083 Punica granatum HOM05D005654 ORTHO05D006438 6.5e-44 181.4 200 59.5
MD10G1009400 Malus domestica HOM05D005654 ORTHO05D006438 1.1e-43 180.6 192 59.4
Medtr8g077440 Medicago truncatula HOM05D005654 ORTHO05D006438 1.9e-43 179.9 191 57.6
TPR.G24134 Trifolium pratense HOM05D005654 ORTHO05D006438 7.2e-43 177.9 188 59.6
Aqoxy6G01210 Aquilegia oxysepala HOM05D005654 ORTHO05D006438 9.3e-43 177.6 188 54.8
Sc18g0007030 Simmondsia chinensis HOM05D005654 ORTHO05D006438 9.3e-43 177.6 186 55.4
Oeu035320.1 Olea europaea HOM05D005654 ORTHO05D006438 1.6e-42 176.8 184 60.3
MBI01_g45163_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 7.9e-42 174.5 195 55.9
SGA_v2.0_scaffold9G04932 Striga asiatica HOM05D005654 ORTHO05D006438 2.5e-40 169.5 165 60.6
Hund00373 Selenicereus undatus HOM05D005654 ORTHO05D006438 6.3e-39 164.9 198 52.5
arahy.Tifrunner.gnm1.ann1.IV76VY Arachis hypogaea HOM05D005654 ORTHO05D006438 1.8e-38 163.3 214 50.5
DCAR_025978 Daucus carota HOM05D005654 ORTHO05D006438 7.7e-37 157.9 194 55.7
Ciclev10003765m.g Citrus clementina HOM05D005654 ORTHO05D006438 1.7e-36 156.8 138 63.8
HPP92_013005 Vanilla planifolia HOM05D005654 ORTHO05D006438 1.9e-35 153.3 131 61.8
arahy.Tifrunner.gnm1.ann1.I9PPQ0 Arachis hypogaea HOM05D005654 ORTHO05D006438 7.9e-34 147.9 200 50.5
CDE04G0601 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 1.4e-33 147.1 188 47.9
CDE12G0226 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 5.1e-33 145.2 188 47.3
SGA_v2.0_scaffold280G46859 Striga asiatica HOM05D005654 ORTHO05D006438 2.0e-32 143.3 136 62.5
Zm00001eb265250 Zea mays HOM05D005654 ORTHO05D006438 2.0e-32 143.3 191 50.3
AUR62027117 Chenopodium quinoa HOM05D005654 ORTHO05D006438 8.2e-31 137.9 206 47.1
Sed0001903 Sechium edule HOM05D005654 ORTHO05D006438 1.4e-30 137.1 95 75.8
Cfa006918 Carpinus fangiana HOM05D005654 ORTHO05D006438 3.1e-30 136.0 207 46.4
Os05g0126200 Oryza sativa ssp. japonica HOM05D005654 ORTHO05D006438 6.9e-30 134.8 134 61.2
CARHR160580 Cardamine hirsuta HOM05D005654 ORTHO05D006438 1.2e-29 134.0 94 77.7
FAN20G0529 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.5e-29 133.7 150 57.3
AUR62012893 Chenopodium quinoa HOM05D005654 ORTHO05D006438 2.6e-29 132.9 200 46.5
EL10Ac9g22080 Beta vulgaris HOM05D005654 ORTHO05D006438 3.4e-29 132.5 250 40.8
ATR0605G129 Amborella trichopoda HOM05D005654 ORTHO05D006438 5.9e-29 131.7 190 45.8
TWI09G1445 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 6.5e-28 128.3 89 79.8
Nn5g29728 Nelumbo nucifera HOM05D005654 ORTHO05D006438 8.5e-28 127.9 140 55.7
Potri.007G018300 Populus trichocarpa HOM05D005654 ORTHO05D006438 5.5e-27 125.2 140 53.6
Cpa.g.sc217.22 Carica papaya HOM05D005654 ORTHO05D006438 2.7e-26 122.9 168 49.4
Ah.08g209860 Amaranthus hybridus HOM05D005654 ORTHO05D006438 4.7e-26 122.1 141 49.6
Psat0s439g0080 Pisum sativum HOM05D005654 ORTHO05D006438 7.9e-26 121.3 133 54.9
Psat2g190960 Pisum sativum HOM05D005654 ORTHO05D006438 1.4e-25 120.6 133 55.6
Rhsim08G0123600 Rhododendron simsii HOM05D005654 ORTHO05D006438 1.8e-25 120.2 188 50.0
unitig_747.g21954 Utricularia gibba HOM05D005654 ORTHO05D006438 4.4e-24 115.5 118 55.9
FAN24G1434 Fragaria x ananassa HOM05D005654 ORTHO05D006438 4.8e-23 112.1 169 43.8
Zm00001eb414250 Zea mays HOM05D005654 ORTHO05D006438 9.1e-22 107.8 96 64.6
SEGI_21166 Sequoiadendron giganteum HOM05D005654 ORTHO05D006438 4.7e-18 95.5 108 50.9
Zm00001eb355020 Zea mays HOM05D005654 ORTHO05D006438 1.2e-16 90.9 126 50.8
Lalb_Chr02g0154671 Lupinus albus HOM05D005654 ORTHO05D006438 5.9e-13 78.6 89 51.7
FAN15G1271 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.3e-12 77.4 62 74.2
CARHR160590 Cardamine hirsuta HOM05D005654 ORTHO05D006438 3.8e-12 75.9 100 50.0
Zm00001eb035810 Zea mays HOM05D005654 ORTHO05D006438 6.5e-12 75.1 81 56.8
Zm00001eb078300 Zea mays HOM05D000349 ORTHO05D010734 5.5e-11 72.0 81 54.3
Zm00001eb309330 Zea mays HOM05D000349 ORTHO05D006438 5.5e-11 72.0 81 54.3
MBI01_g11791_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 4.7e-10 68.9 140 38.6
Zm00001eb093520 Zea mays HOM05D005654 ORTHO05D006438 8.8e-09 64.7 62 59.7
SHI03481 Sapria himalayana HOM05D005654 ORTHO05D006438 3.4e-08 62.8 114 40.4
CAN.G419.11 Capsicum annuum HOM05D005654 ORTHO05D006438 4.4e-08 62.4 39 89.7
SHI05467 Sapria himalayana HOM05D005654 ORTHO05D006438 2.8e-07 59.7 61 57.4
Mapoly0001s0539 Marchantia polymorpha HOM05D024399 ORTHO05D023494 3.7e-07 59.3 183 33.3
Zm00001eb372850 Zea mays HOM05D005654 ORTHO05D006438 3.7e-07 59.3 56 64.3
FAN24G2610 Fragaria x ananassa HOM05D005654 ORTHO05D006438 2.4e-06 56.6 43 76.7


User provided reference genes

Program Settings