Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G416.4 Capsicum annuum HOM05D007406 ORTHO05D009434 2.1e-115 419.1 216 100.0
Solyc04g077450.3 Solanum lycopersicum HOM05D007406 ORTHO05D009434 8.2e-104 380.6 213 92.0
Sopen04g031040 Solanum pennellii HOM05D007406 ORTHO05D009434 4.1e-103 378.3 213 91.5
Nitab4.5_0007871g0020 Nicotiana tabacum HOM05D007406 ORTHO05D009434 1.4e-87 326.6 216 81.0
TWI36G1291 Tripterygium wilfordii HOM05D007406 ORTHO05D009434 5.5e-84 314.7 216 75.5
Actinidia10229 Actinidia chinensis HOM05D007406 ORTHO05D009434 7.2e-84 314.3 193 81.9
TAR628G0119 Trochodendron aralioides HOM05D007406 ORTHO05D009434 9.4e-84 313.9 215 73.5
Cc10_g07740 Coffea canephora HOM05D007406 ORTHO05D009434 2.1e-83 312.8 214 74.3
vmacro21408 Vaccinium macrocarpon HOM05D007406 ORTHO05D009434 4.0e-82 308.5 241 68.0
Thecc.08G083300 Theobroma cacao HOM05D007406 ORTHO05D009434 5.2e-82 308.1 214 73.4
Prupe.1G418200 Prunus persica HOM05D007406 ORTHO05D009434 8.8e-82 307.4 214 73.8
Cfa013727 Carpinus fangiana HOM05D007406 ORTHO05D009434 3.4e-81 305.4 212 74.1
Hma1.2p1_1926F.1_g307730 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 9.8e-81 303.9 216 74.1
CiPaw.08G053000 Carya illinoinensis HOM05D007406 ORTHO05D009434 1.3e-80 303.5 214 72.0
FAN24G2334 Fragaria x ananassa HOM05D007406 ORTHO05D009434 1.3e-80 303.5 215 71.6
Ciclev10002365m.g Citrus clementina HOM05D007406 ORTHO05D009434 2.8e-80 302.4 215 69.8
Migut.N02801 Erythranthe guttata HOM05D007406 ORTHO05D009434 2.8e-80 302.4 214 72.0
Duzib041G0608 Durio zibethinus HOM05D007406 ORTHO05D009434 4.9e-80 301.6 214 72.0
FvH4_2g32510 Fragaria vesca HOM05D007406 ORTHO05D009434 8.3e-80 300.8 215 71.2
MD15G1064200 Malus domestica HOM05D007406 ORTHO05D009434 8.3e-80 300.8 212 73.1
Prupe.6G207800 Prunus persica HOM05D007406 ORTHO05D009434 2.4e-79 299.3 201 75.6
Haze_22374 Corylus avellana HOM05D007406 ORTHO05D009434 5.4e-79 298.1 240 67.1
Nn6g34540 Nelumbo nucifera HOM05D007406 ORTHO05D009434 5.4e-79 298.1 215 70.7
Lalb_Chr14g0368031 Lupinus albus HOM05D007406 ORTHO05D009434 7.0e-79 297.7 217 71.4
RcHm_v2.0_Chr6g0310141 Rosa chinensis HOM05D007406 ORTHO05D009434 7.0e-79 297.7 216 70.8
Atru.chr13.879 Acer truncatum HOM05D007406 ORTHO05D009434 1.2e-78 297.0 214 70.1
Aqoxy6G02928 Aquilegia oxysepala HOM05D007406 ORTHO05D009434 1.6e-78 296.6 216 71.8
FAN27G1006 Fragaria x ananassa HOM05D007406 ORTHO05D009434 3.5e-78 295.4 215 70.2
VMungo0647G2305 Vigna mungo HOM05D007406 ORTHO05D009434 4.5e-78 295.0 218 69.7
DCAR_020070 Daucus carota HOM05D007406 ORTHO05D009434 5.9e-78 294.7 222 69.4
Potri.002G114400 Populus trichocarpa HOM05D007406 ORTHO05D009434 5.9e-78 294.7 216 70.4
Gohir.A02G079900 Gossypium hirsutum HOM05D007406 ORTHO05D009434 1.0e-77 293.9 214 71.0
Gohir.D02G087800 Gossypium hirsutum HOM05D007406 ORTHO05D009434 3.8e-77 292.0 214 70.1
HanXRQChr08g0226371 Helianthus annuus HOM05D007406 ORTHO05D009434 3.8e-77 292.0 212 69.8
TPR.G13149 Trifolium pratense HOM05D007406 ORTHO05D009434 3.8e-77 292.0 218 70.2
Gorai.005G098400 Gossypium raimondii HOM05D007406 ORTHO05D009434 5.0e-77 291.6 214 70.1
Peaxi162Scf01161g00328 Petunia axillaris HOM05D007406 ORTHO05D009434 5.0e-77 291.6 213 74.2
Phvul.001G031500 Phaseolus vulgaris HOM05D007406 ORTHO05D009434 5.0e-77 291.6 223 68.6
Glyma.14G090300 Glycine max HOM05D007406 ORTHO05D009434 6.6e-77 291.2 218 69.7
PSO017G2718 Papaver somniferum HOM05D007406 ORTHO05D009434 6.6e-77 291.2 213 68.5
arahy.Tifrunner.gnm1.ann1.GL3N7R Arachis hypogaea HOM05D007406 ORTHO05D009434 1.5e-76 290.0 218 68.3
Lj5g0009058 Lotus japonicus HOM05D007406 ORTHO05D009434 1.5e-76 290.0 218 69.3
CANSAT25G0188 Cannabis sativa HOM05D007406 ORTHO05D009434 3.3e-76 288.9 214 70.1
MELO3C016844.2 Cucumis melo HOM05D007406 ORTHO05D009434 4.3e-76 288.5 215 70.7
Manes.18G050400 Manihot esculenta HOM05D007406 ORTHO05D009434 5.6e-76 288.1 215 69.8
ClCG05G017610 Citrullus lanatus HOM05D007406 ORTHO05D009434 7.3e-76 287.7 219 69.9
Ca_06987_v3 Cicer arietinum L. HOM05D007406 ORTHO05D009434 1.2e-75 287.0 218 68.3
AL3G23880 Arabidopsis lyrata HOM05D007406 ORTHO05D009434 4.7e-75 285.0 212 70.3
Carub.0003s1158 Capsella rubella HOM05D007406 ORTHO05D009434 4.7e-75 285.0 212 70.3
Medtr1g017290 Medicago truncatula HOM05D007406 ORTHO05D009434 4.7e-75 285.0 219 68.0
Sp3g10440 Schrenkiella parvula HOM05D007406 ORTHO05D009434 4.7e-75 285.0 214 70.6
Thhalv10021516m.g Eutrema salsugineum HOM05D007406 ORTHO05D009434 6.1e-75 284.6 214 70.6
THA.LOC104799833 Tarenaya hassleriana HOM05D007406 ORTHO05D009434 8.0e-75 284.3 193 73.6
Cpa.g.sc160.29 Carica papaya HOM05D007406 ORTHO05D009434 1.0e-74 283.9 214 65.9
MSTRG.22203 Avicennia marina HOM05D007406 ORTHO05D009434 2.3e-74 282.7 214 68.2
PGR031G1333 Punica granatum HOM05D007406 ORTHO05D009434 2.3e-74 282.7 224 65.6
Lsat_1_v5_gn_1_721 Lactuca sativa HOM05D007406 ORTHO05D009434 3.0e-74 282.3 196 75.0
Sed0009876 Sechium edule HOM05D007406 ORTHO05D009434 4.0e-74 282.0 215 68.8
AT3G12210 Arabidopsis thaliana HOM05D007406 ORTHO05D009434 2.0e-73 279.6 212 69.3
BolC5t34221H Brassica oleracea HOM05D007406 ORTHO05D009434 2.6e-73 279.3 214 68.7
BraA05t22509Z Brassica rapa HOM05D007406 ORTHO05D009434 2.6e-73 279.3 214 69.2
SalBow2G1084 Salvia bowleyana HOM05D007406 ORTHO05D009434 7.5e-73 277.7 217 65.4
Rhsim06G0065300 Rhododendron simsii HOM05D007406 ORTHO05D009434 1.3e-72 276.9 167 82.0
ECA247G1434 Erigeron canadensis HOM05D007406 ORTHO05D009434 2.2e-72 276.2 219 66.2
Eucgr.F02216 Eucalyptus grandis HOM05D007406 ORTHO05D009434 2.2e-72 276.2 215 65.6
arahy.Tifrunner.gnm1.ann1.V0H9ZK Arachis hypogaea HOM05D007406 ORTHO05D009434 3.7e-72 275.4 218 66.1
Aa31LG11G6470 Aethionema arabicum HOM05D007406 ORTHO05D009434 3.5e-70 268.9 208 65.9
Zm00001eb215640 Zea mays HOM05D007406 ORTHO05D009434 7.8e-70 267.7 209 65.1
MBI16_g35726_MAGBIO Magnolia biondii HOM05D007406 ORTHO05D009434 1.3e-69 266.9 230 61.7
SGA_v2.0_scaffold28G11843 Striga asiatica HOM05D007406 ORTHO05D009434 1.3e-69 266.9 214 64.0
CSS0019783 Camellia sinensis var. sinensis HOM05D007406 ORTHO05D009434 2.3e-69 266.2 167 79.6
Hund05268 Selenicereus undatus HOM05D007406 ORTHO05D009434 8.6e-69 264.2 214 65.9
EL10Ac1g02342 Beta vulgaris HOM05D007406 ORTHO05D009434 2.5e-68 262.7 214 65.9
AUR62034986 Chenopodium quinoa HOM05D007406 ORTHO05D009434 3.3e-68 262.3 217 65.0
PSO170G2494 Papaver somniferum HOM05D007406 ORTHO05D009434 3.3e-68 262.3 183 71.0
Ah.05g166920 Amaranthus hybridus HOM05D007406 ORTHO05D009434 3.6e-67 258.8 217 63.1
BcaC05g29272 Brassica carinata HOM05D007406 ORTHO05D009434 1.5e-65 253.4 167 74.9
Oeu053653.1 Olea europaea HOM05D007406 ORTHO05D009434 2.6e-65 252.7 170 74.1
CsaV3_4G035340 Cucumis sativus L. HOM05D007406 ORTHO05D009434 4.4e-65 251.9 171 74.3
Sabra02G0090500 Salix brachista HOM05D000717 ORTHO05D000555 1.3e-64 250.4 167 73.7
Lj4C76T9 Lonicera japonica HOM05D007406 ORTHO05D009434 2.9e-64 249.2 155 80.0
ATR0739G008 Amborella trichopoda HOM05D007406 ORTHO05D009434 4.9e-64 248.4 213 59.2
COL.COLO4_28451 Corchorus olitorius HOM05D007406 ORTHO05D009434 2.7e-62 242.7 193 64.2
Nitab4.5_0001494g0090 Nicotiana tabacum HOM05D007406 ORTHO05D009434 2.7e-62 242.7 216 64.4
GSVIVG01009288001 Vitis vinifera HOM05D007406 ORTHO05D009434 1.1e-58 230.7 151 79.5
SEGI_23576 Sequoiadendron giganteum HOM05D007406 ORTHO05D009434 5.2e-58 228.4 232 54.3
Pp3c10_2700 Physcomitrium patens HOM05D007406 ORTHO05D009434 8.3e-56 221.1 219 54.8
CARHR086780 Cardamine hirsuta HOM05D007406 ORTHO05D009434 6.0e-54 214.9 138 76.1
CDE04G3630 Ceratophyllum demersum HOM05D007406 ORTHO05D009434 6.4e-48 194.9 141 67.4
AUR62039350 Chenopodium quinoa HOM05D007406 ORTHO05D009434 5.4e-47 191.8 153 68.0
A05p37120 Brassica napus HOM05D007406 ORTHO05D004372 3.6e-43 179.1 143 70.6
C05p55550 Brassica napus HOM05D007406 ORTHO05D004372 4.7e-43 178.7 143 69.9
Sc15g0005330 Simmondsia chinensis HOM05D007406 ORTHO05D009434 8.9e-42 174.5 136 64.0
Aa31sc118G30 Aethionema arabicum HOM05D007406 ORTHO05D009434 3.3e-28 129.4 95 68.4
Hma1.2p1_1926F.1_g307740 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 2.8e-27 126.3 83 78.3
Hma1.2p1_2378F.1_g320925 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 2.8e-27 126.3 83 78.3
Dinv39200 Davidia involucrata HOM05D007406 ORTHO05D009434 2.7e-22 109.8 68 80.9
MCO14G094 Micromonas commoda HOM05D007406 ORTHO05D009434 6.0e-22 108.6 212 35.4
Psat0s3650g0120 Pisum sativum HOM05D007406 ORTHO05D009434 5.1e-21 105.5 59 83.1
Cre10.g466400 Chlamydomonas reinhardtii HOM05D007406 ORTHO05D009434 2.5e-15 86.7 158 37.3
PRCOL_00000641 Prasinoderma coloniale HOM05D007406 ORTHO05D009434 4.2e-15 85.9 178 37.6
Os03g0728600 Oryza sativa ssp. japonica HOM05D007406 ORTHO05D009434 1.6e-14 84.0 73 47.9
Sc15g0005340 Simmondsia chinensis HOM05D007406 ORTHO05D009434 1.8e-13 80.5 76 59.2
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 5.5e-07 58.9 42 69.0


User provided reference genes

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