Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1045.12 Capsicum annuum HOM05D008285 ORTHO05D010431 4.3e-26 120.6 61 100.0
CAN.G1045.15 Capsicum annuum HOM05D008285 ORTHO05D010431 4.3e-26 120.6 61 100.0
CAN.G222.14 Capsicum annuum HOM05D008285 ORTHO05D010431 4.3e-26 120.6 61 100.0
CAN.G413.8 Capsicum annuum HOM05D008285 ORTHO05D010431 4.3e-26 120.6 61 100.0
CAN.G1431.2 Capsicum annuum HOM05D008285 ORTHO05D010431 1.3e-25 119.0 61 98.4
CAN.G8.24 Capsicum annuum HOM05D008285 ORTHO05D010431 6.3e-25 116.7 61 96.7
CAN.G1324.6 Capsicum annuum HOM05D008285 ORTHO05D010431 1.1e-24 115.9 61 96.7
CAN.G965.8 Capsicum annuum HOM05D008285 ORTHO05D010431 1.4e-24 115.5 61 96.7
CAN.G657.10 Capsicum annuum HOM05D008285 ORTHO05D010431 2.5e-21 104.8 53 100.0
CAN.G213.15 Capsicum annuum HOM05D008285 ORTHO05D010431 8.7e-19 96.3 58 84.5
CAN.G262.5 Capsicum annuum HOM05D008285 ORTHO05D010431 9.7e-18 92.8 52 92.3
RcHm_v2.0_CPg0502841 Rosa chinensis HOM05D008285 ORTHO05D010431 1.3e-14 82.4 47 87.2
PGSC0003DMG400000878 Solanum tuberosum HOM05D008285 ORTHO05D010431 1.3e-14 82.4 56 76.8
SalBow1G4672 Salvia bowleyana HOM05D008285 ORTHO05D010431 2.2e-14 81.6 55 76.4
SalBow1G6462 Salvia bowleyana HOM05D008285 ORTHO05D010431 2.2e-14 81.6 55 76.4
Hma1.2p1_0859F.1_g229500 Hydrangea macrophylla HOM05D008285 ORTHO05D010431 2.9e-14 81.3 53 77.4
PGR111G0120 Punica granatum HOM05D008285 ORTHO05D010431 2.9e-14 81.3 47 85.1
Gohir.1Z049931 Gossypium hirsutum HOM05D008285 ORTHO05D010431 3.8e-14 80.9 47 83.0
Gohir.A02G134106 Gossypium hirsutum HOM05D008285 ORTHO05D010431 3.8e-14 80.9 47 83.0
Gorai.009G442800 Gossypium raimondii HOM05D008285 ORTHO05D010431 3.8e-14 80.9 47 83.0
Nn031s41612 Nelumbo nucifera HOM05D008285 ORTHO05D010431 5.0e-14 80.5 47 85.1
Nn064s42214 Nelumbo nucifera HOM05D008285 ORTHO05D010431 5.0e-14 80.5 47 85.1
RcHm_v2.0_Chr4g0421191 Rosa chinensis HOM05D008285 ORTHO05D010431 6.5e-14 80.1 47 85.1
Gohir.1Z049481 Gossypium hirsutum HOM05D008285 ORTHO05D010431 8.5e-14 79.7 47 83.0
PSO548G0110 Papaver somniferum HOM05D008285 ORTHO05D010431 1.1e-13 79.3 53 79.2
CSS0043912 Camellia sinensis var. sinensis HOM05D008285 ORTHO05D010431 1.4e-13 79.0 53 75.5
Gohir.A01G140110 Gossypium hirsutum HOM05D008285 ORTHO05D010431 1.4e-13 79.0 47 80.9
Nn8g41105 Nelumbo nucifera HOM05D008285 ORTHO05D010431 2.5e-13 78.2 47 80.9
Manes.18G138300 Manihot esculenta HOM05D008285 ORTHO05D010431 3.2e-13 77.8 47 83.0
ATCG01020 Arabidopsis thaliana HOM05D008285 ORTHO05D010431 7.2e-13 76.6 47 80.9
C09p40390 Brassica napus HOM05D008285 ORTHO05D010431 7.2e-13 76.6 47 80.9
BolSC29t60502H Brassica oleracea HOM05D008285 ORTHO05D010431 7.2e-13 76.6 47 80.9
BolSC35t60700H Brassica oleracea HOM05D008285 ORTHO05D010431 7.2e-13 76.6 47 80.9
BolSC44t60819H Brassica oleracea HOM05D008285 ORTHO05D010431 7.2e-13 76.6 47 80.9
BraSC103t45425Z Brassica rapa HOM05D008285 ORTHO05D010431 7.2e-13 76.6 47 80.9
BraSC138t45538Z Brassica rapa HOM05D008285 ORTHO05D010431 7.2e-13 76.6 47 80.9
BraSC25t45906Z Brassica rapa HOM05D008285 ORTHO05D010431 7.2e-13 76.6 47 80.9
BraSC59t46547Z Brassica rapa HOM05D008285 ORTHO05D010431 7.2e-13 76.6 47 80.9
MBI10_g47591_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 7.2e-13 76.6 47 80.9
Gohir.A12G229600 Gossypium hirsutum HOM05D008285 ORTHO05D010431 9.4e-13 76.3 47 76.6
Nn212s45209 Nelumbo nucifera HOM05D008285 ORTHO05D010431 1.2e-12 75.9 48 83.3
PSO063G2603 Papaver somniferum HOM05D008285 ORTHO05D010431 1.2e-12 75.9 49 75.5
Aqoxy1G03262 Aquilegia oxysepala HOM05D008285 ORTHO05D010431 1.6e-12 75.5 56 67.9
C02p28770 Brassica napus HOM05D008285 ORTHO05D010431 1.6e-12 75.5 56 73.2
BolC2t08924H Brassica oleracea HOM05D008285 ORTHO05D010431 1.6e-12 75.5 56 73.2
HanXRQCPg0580381 Helianthus annuus HOM05D008285 ORTHO05D010431 1.6e-12 75.5 54 74.1
PSO339G5238 Papaver somniferum HOM05D008285 ORTHO05D010431 2.7e-12 74.7 49 73.5
BolC9t56929H Brassica oleracea HOM05D008285 ORTHO05D010431 3.6e-12 74.3 47 78.7
BolC9t56809H Brassica oleracea HOM05D008285 ORTHO05D010431 4.6e-12 73.9 47 78.7
CARHR282410 Cardamine hirsuta HOM05D008285 ORTHO05D010431 6.1e-12 73.6 47 80.9
Nitab4.5_0015353g0010 Nicotiana tabacum HOM05D008285 ORTHO05D010431 7.9e-12 73.2 45 84.4
Solyc03g013610.1 Solanum lycopersicum HOM05D008285 ORTHO05D010431 7.9e-12 73.2 56 71.4
DCAR_032534 Daucus carota HOM05D008285 ORTHO05D010431 2.3e-11 71.6 55 72.7
Nn1g08636 Nelumbo nucifera HOM05D008285 ORTHO05D010431 8.8e-11 69.7 47 74.5
SGA_v2.0_scaffold36G14477 Striga asiatica HOM05D008285 ORTHO05D010431 2.0e-10 68.6 55 65.5
Medtr4g006140 Medicago truncatula HOM05D008285 ORTHO05D010431 2.6e-10 68.2 44 77.3
Lalb_Chr07g0191721 Lupinus albus HOM05D008285 ORTHO05D010431 3.3e-10 67.8 48 75.0
Potri.009G163200 Populus trichocarpa HOM05D008285 ORTHO05D010431 3.3e-10 67.8 47 74.5
BolC2t10592H Brassica oleracea HOM05D008285 ORTHO05D010431 7.4e-10 66.6 43 76.7
BolSC45t60913H Brassica oleracea HOM05D008285 ORTHO05D010431 3.7e-09 64.3 48 75.0
Psat5g142800 Pisum sativum HOM05D008285 ORTHO05D010431 1.4e-08 62.4 46 69.6
SMO230G0005 Selaginella moellendorffii HOM05D008285 ORTHO05D010431 1.0e-06 56.2 53 52.8


User provided reference genes

Program Settings