Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 3.6e-44 181.0 82 100.0
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 9.3e-24 113.2 60 85.0
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 9.3e-24 113.2 60 85.0
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 9.3e-24 113.2 60 85.0
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 9.3e-24 113.2 60 85.0
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 3.5e-23 111.3 60 83.3
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 5.1e-22 107.5 60 78.3
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 5.1e-22 107.5 60 78.3
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 6.7e-22 107.1 60 78.3
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 6.7e-22 107.1 60 78.3
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 8.7e-22 106.7 59 79.7
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 1.9e-21 105.5 60 76.7
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 2.5e-21 105.1 60 76.7
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 3.3e-21 104.8 60 75.0
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 3.3e-21 104.8 60 75.0
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 3.3e-21 104.8 60 75.0
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 5.6e-21 104.0 60 75.0
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 5.6e-21 104.0 60 75.0
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 5.6e-21 104.0 60 75.0
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 7.4e-21 103.6 60 73.3
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 9.6e-21 103.2 60 73.3
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 1.3e-20 102.8 59 74.6
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 1.3e-20 102.8 60 71.7
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 1.6e-20 102.4 59 74.6
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 1.6e-20 102.4 60 73.3
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 2.8e-20 101.7 60 73.3
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 2.8e-20 101.7 60 73.3
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 4.8e-20 100.9 60 73.3
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 6.2e-20 100.5 60 73.3
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 6.2e-20 100.5 60 76.7
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 6.2e-20 100.5 59 74.6
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 6.2e-20 100.5 60 71.7
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 8.1e-20 100.1 59 76.3
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 8.1e-20 100.1 60 71.7
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 1.1e-19 99.8 60 71.7
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 1.1e-19 99.8 60 71.7
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 1.1e-19 99.8 59 71.2
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 1.1e-19 99.8 60 73.3
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 1.1e-19 99.8 59 71.2
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 1.4e-19 99.4 56 76.8
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 1.8e-19 99.0 59 74.6
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 2.4e-19 98.6 58 74.1
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 2.4e-19 98.6 60 70.0
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 2.4e-19 98.6 60 73.3
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 2.4e-19 98.6 59 72.9
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 2.4e-19 98.6 59 72.9
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 2.4e-19 98.6 59 71.2
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 3.1e-19 98.2 59 71.2
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 3.1e-19 98.2 60 68.3
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 3.1e-19 98.2 60 70.0
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 3.1e-19 98.2 60 66.7
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 4.0e-19 97.8 62 66.1
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 4.0e-19 97.8 62 66.1
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 4.0e-19 97.8 60 71.7
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 5.3e-19 97.4 60 68.3
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 5.3e-19 97.4 58 74.1
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 6.9e-19 97.1 60 66.7
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 6.9e-19 97.1 59 71.2
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 9.0e-19 96.7 60 66.7
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 9.0e-19 96.7 60 70.0
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 9.0e-19 96.7 60 65.0
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 9.0e-19 96.7 59 69.5
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 9.0e-19 96.7 60 66.7
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 9.0e-19 96.7 60 70.0
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 9.0e-19 96.7 60 73.3
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 9.0e-19 96.7 60 66.7
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 1.2e-18 96.3 60 65.0
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 1.2e-18 96.3 59 69.5
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.2e-18 96.3 59 69.5
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 1.2e-18 96.3 60 66.7
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 1.5e-18 95.9 59 67.8
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 1.5e-18 95.9 59 67.8
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.5e-18 95.9 59 71.2
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 1.5e-18 95.9 60 66.7
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 1.5e-18 95.9 58 70.7
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 2.0e-18 95.5 62 62.9
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 2.0e-18 95.5 60 70.0
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.0e-18 95.5 59 69.5
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.0e-18 95.5 56 73.2
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 2.0e-18 95.5 59 69.5
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 2.0e-18 95.5 62 64.5
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 3.4e-18 94.7 59 69.5
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 3.4e-18 94.7 67 61.2
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 4.5e-18 94.4 59 69.5
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 4.5e-18 94.4 59 69.5
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 4.5e-18 94.4 62 64.5
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 4.5e-18 94.4 59 66.1
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 4.5e-18 94.4 59 69.5
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 5.8e-18 94.0 66 66.7
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 5.8e-18 94.0 62 62.9
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 5.8e-18 94.0 62 62.9
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 5.8e-18 94.0 60 68.3
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 7.6e-18 93.6 74 60.8
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 7.6e-18 93.6 60 65.0
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 7.6e-18 93.6 59 67.8
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 7.6e-18 93.6 67 56.7
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 7.6e-18 93.6 72 59.7
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 7.6e-18 93.6 59 67.8
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 1.0e-17 93.2 63 65.1
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 1.0e-17 93.2 60 65.0
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 1.3e-17 92.8 61 63.9
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.7e-17 92.4 59 67.8
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 1.7e-17 92.4 62 62.9
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 1.7e-17 92.4 59 67.8
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 2.9e-17 91.7 59 66.1
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 3.8e-17 91.3 67 58.2
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 3.8e-17 91.3 67 65.7
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 6.5e-17 90.5 60 63.3
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 6.5e-17 90.5 60 63.3
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 6.5e-17 90.5 53 71.7
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 8.4e-17 90.1 60 63.3
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 8.4e-17 90.1 58 70.7
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 1.4e-16 89.4 59 64.4
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 1.4e-16 89.4 59 64.4
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 1.9e-16 89.0 61 63.9
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 1.9e-16 89.0 59 62.7
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 2.5e-16 88.6 59 64.4
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 7.1e-16 87.0 69 56.5
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 7.1e-16 87.0 60 58.3
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.2e-15 86.3 60 68.3
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 4.6e-15 84.3 91 48.4
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 7.9e-15 83.6 59 61.0
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 3.9e-14 81.3 58 58.6
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 5.1e-14 80.9 60 58.3
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 1.5e-13 79.3 101 43.6
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 2.5e-13 78.6 56 58.9
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 5.7e-13 77.4 109 40.4
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 2.1e-12 75.5 57 57.9
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 1.5e-10 69.3 45 66.7
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 2.0e-10 68.9 44 68.2
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 2.0e-10 68.9 44 68.2
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 1.4e-08 62.8 56 50.0
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 3.2e-08 61.6 67 40.3
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.7e-07 58.5 30 80.0
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 4.6e-07 57.8 30 80.0
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 1.3e-06 56.2 59 40.7


User provided reference genes

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