Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G411.80 Capsicum annuum HOM05D000007 ORTHO05D013549 1.6e-94 349.7 222 100.0
Peaxi162Scf00001g00418 Petunia axillaris HOM05D000007 ORTHO05D013549 1.3e-32 144.1 108 59.3
Peaxi162Scf00001g04112 Petunia axillaris HOM05D000007 ORTHO05D013549 3.3e-31 139.4 108 57.4
CAN.G175.11 Capsicum annuum HOM05D000004 ORTHO05D013549 1.3e-27 127.5 120 55.0
Peaxi162Scf00001g04121 Petunia axillaris HOM05D000007 ORTHO05D013549 1.9e-26 123.6 96 59.4
CAN.G175.10 Capsicum annuum HOM05D000007 ORTHO05D013549 2.1e-25 120.2 88 64.8
Nitab4.5_0002684g0040 Nicotiana tabacum HOM05D000007 ORTHO05D013549 1.6e-22 110.5 108 50.9
CAN.G411.76 Capsicum annuum HOM05D000007 ORTHO05D000039 4.7e-22 109.0 99 54.5
PGSC0003DMG400028432 Solanum tuberosum HOM05D000007 ORTHO05D013549 8.1e-22 108.2 96 53.1
Solyc02g072423.1 Solanum lycopersicum HOM05D000007 ORTHO05D013549 1.4e-21 107.5 96 49.0
Sopen02g021380 Solanum pennellii HOM05D000007 ORTHO05D013549 4.0e-21 105.9 96 47.9
PGSC0003DMG400028431 Solanum tuberosum HOM05D000007 ORTHO05D013549 7.6e-20 101.7 97 51.5
Solyc02g072420.1 Solanum lycopersicum HOM05D000007 ORTHO05D013549 8.4e-19 98.2 96 46.9
Sopen02g021370 Solanum pennellii HOM05D000007 ORTHO05D013549 9.3e-18 94.7 96 45.8
Sopen02g021360 Solanum pennellii HOM05D000007 ORTHO05D013549 9.6e-15 84.7 73 45.2
Nitab4.5_0002395g0010 Nicotiana tabacum HOM05D000007 ORTHO05D013549 1.4e-10 70.9 108 39.8
Oeu009216.3 Olea europaea HOM05D000007 ORTHO05D000017 1.9e-10 70.5 90 38.9
Oeu031249.1 Olea europaea HOM05D000007 ORTHO05D000039 3.2e-10 69.7 98 32.7
Dinv06198 Davidia involucrata HOM05D000007 ORTHO05D000039 1.6e-09 67.4 90 36.7
ECA233G5519 Erigeron canadensis HOM05D000007 ORTHO05D000039 2.1e-09 67.0 99 33.3
Oeu002398.1 Olea europaea HOM05D000007 ORTHO05D000039 4.6e-09 65.9 95 32.6
Nitab4.5_0000072g0270 Nicotiana tabacum HOM05D000021 ORTHO05D000010 7.9e-09 65.1 107 43.0
Manes.07G039200 Manihot esculenta HOM05D000007 ORTHO05D000039 1.8e-08 63.9 106 34.9
MD12G1213000 Malus domestica HOM05D000007 ORTHO05D000039 2.3e-08 63.5 105 31.4
RhsimUnG0110700 Rhododendron simsii HOM05D000007 ORTHO05D000017 2.3e-08 63.5 101 35.6
Nitab4.5_0004886g0040 Nicotiana tabacum HOM05D000021 ORTHO05D000010 3.0e-08 63.2 106 70.8
PSO384G4310 Papaver somniferum HOM05D000007 ORTHO05D000017 3.0e-08 63.2 96 32.3
Prupe.3G013300 Prunus persica HOM05D000007 ORTHO05D000039 3.0e-08 63.2 96 35.4
DCAR_004837 Daucus carota HOM05D000007 ORTHO05D000039 6.7e-08 62.0 96 36.5
Hma1.2p1_0178F.1_g078420 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 6.7e-08 62.0 98 31.6
Oeu041753.1 Olea europaea HOM05D058779 ORTHO05D000039 8.7e-08 61.6 110 32.7
PGR042G0166 Punica granatum HOM05D000007 ORTHO05D000039 8.7e-08 61.6 90 37.8
RcHm_v2.0_Chr6g0259371 Rosa chinensis HOM05D000007 ORTHO05D000039 8.7e-08 61.6 98 35.7
FvH4_7g08973 Fragaria vesca HOM05D000007 ORTHO05D000039 1.1e-07 61.2 97 34.0
Lsat_1_v5_gn_8_141900 Lactuca sativa HOM05D000007 ORTHO05D000039 1.5e-07 60.8 99 29.3
MD09G1281000 Malus domestica HOM05D000007 ORTHO05D000039 1.5e-07 60.8 142 26.8
Oeu030915.1 Olea europaea HOM05D000007 ORTHO05D000039 1.5e-07 60.8 105 32.4
SalBow5G1166 Salvia bowleyana HOM05D000021 ORTHO05D000010 1.5e-07 60.8 53 54.7
CAN.G519.14 Capsicum annuum HOM05D000021 ORTHO05D000010 2.5e-07 60.1 48 58.3
Lj1C663T4 Lonicera japonica HOM05D000007 ORTHO05D000039 2.5e-07 60.1 96 31.2
MD17G1230300 Malus domestica HOM05D000007 ORTHO05D000039 2.5e-07 60.1 113 29.2
Nitab4.5_0021718g0010 Nicotiana tabacum HOM05D000021 ORTHO05D000010 2.5e-07 60.1 90 37.8
SalBow7G2809 Salvia bowleyana HOM05D000021 ORTHO05D000010 3.3e-07 59.7 53 50.9
Migut.G01178 Erythranthe guttata HOM05D000021 ORTHO05D000010 4.3e-07 59.3 52 53.8
MD09G1191300 Malus domestica HOM05D000007 ORTHO05D000039 4.3e-07 59.3 92 31.5
Nitab4.5_0002027g0050 Nicotiana tabacum HOM05D000007 ORTHO05D000039 4.3e-07 59.3 113 33.6
PSO675G0185 Papaver somniferum HOM05D000007 ORTHO05D000017 4.3e-07 59.3 105 32.4
Sopen02g021410 Solanum pennellii HOM05D000021 ORTHO05D000010 4.3e-07 59.3 108 66.7
Thecc.06G029600 Theobroma cacao HOM05D000007 ORTHO05D000039 4.3e-07 59.3 100 33.0
Cc00_g21480 Coffea canephora HOM05D000021 ORTHO05D000010 5.6e-07 58.9 38 73.7
Cc00_g30700 Coffea canephora HOM05D000021 ORTHO05D000010 5.6e-07 58.9 38 73.7
Cc02_g15270 Coffea canephora HOM05D000021 ORTHO05D000010 5.6e-07 58.9 38 73.7
Dinv30114 Davidia involucrata HOM05D000007 ORTHO05D000039 5.6e-07 58.9 102 29.4
FvH4_3g39330 Fragaria vesca HOM05D000007 ORTHO05D000039 5.6e-07 58.9 99 33.3
MD17G1255800 Malus domestica HOM05D000007 ORTHO05D000039 5.6e-07 58.9 79 31.6
RcHm_v2.0_Chr1g0344741 Rosa chinensis HOM05D000007 ORTHO05D000039 5.6e-07 58.9 115 29.6
Cc00_g24400 Coffea canephora HOM05D000021 ORTHO05D000010 7.4e-07 58.5 38 73.7
Cc08_g10200 Coffea canephora HOM05D000021 ORTHO05D000010 7.4e-07 58.5 41 70.7
Migut.G00800 Erythranthe guttata HOM05D000021 ORTHO05D000010 7.4e-07 58.5 78 41.0
Migut.G01323 Erythranthe guttata HOM05D000021 ORTHO05D000010 7.4e-07 58.5 52 53.8
FAN11G3224 Fragaria x ananassa HOM05D000007 ORTHO05D000039 7.4e-07 58.5 99 33.3
MD17G1255300 Malus domestica HOM05D000007 ORTHO05D000039 7.4e-07 58.5 79 32.9
Nitab4.5_0005219g0040 Nicotiana tabacum HOM05D000007 ORTHO05D000039 7.4e-07 58.5 103 30.1
Migut.G01003 Erythranthe guttata HOM05D000021 ORTHO05D000010 9.6e-07 58.2 52 53.8
Migut.H01446 Erythranthe guttata HOM05D000021 ORTHO05D000010 9.6e-07 58.2 52 53.8
Dinv24586 Davidia involucrata HOM05D000007 ORTHO05D000039 1.3e-06 57.8 90 32.2
MD09G1281100 Malus domestica HOM05D000007 ORTHO05D000039 1.3e-06 57.8 101 28.7
Peaxi162Scf00009g02613 Petunia axillaris HOM05D000007 ORTHO05D000017 1.3e-06 57.8 107 31.8
Cc09_g08660 Coffea canephora HOM05D000021 ORTHO05D000010 1.6e-06 57.4 90 41.1
MD09G1281200 Malus domestica HOM05D000007 ORTHO05D000039 1.6e-06 57.4 134 27.6
Prupe.3G047400 Prunus persica HOM05D000007 ORTHO05D000039 1.6e-06 57.4 158 29.7
QL02p078646 Quercus lobata HOM05D000007 ORTHO05D000039 1.6e-06 57.4 128 28.9
Lj1C663T3 Lonicera japonica HOM05D000007 ORTHO05D000039 2.1e-06 57.0 67 37.3
Prupe.3G013500 Prunus persica HOM05D000007 ORTHO05D000039 2.1e-06 57.0 91 36.3
RcHm_v2.0_Chr5g0031751 Rosa chinensis HOM05D000007 ORTHO05D000039 2.1e-06 57.0 110 33.6
Cfa015552 Carpinus fangiana HOM05D000007 ORTHO05D000017 2.8e-06 56.6 137 29.9
Cc09_g05670 Coffea canephora HOM05D000021 ORTHO05D000010 2.8e-06 56.6 48 56.2
Cc09_g05730 Coffea canephora HOM05D000021 ORTHO05D000010 2.8e-06 56.6 109 36.7
Cc11_g02170 Coffea canephora HOM05D000021 ORTHO05D000010 2.8e-06 56.6 56 50.0
MD17G1252300 Malus domestica HOM05D000007 ORTHO05D000039 2.8e-06 56.6 77 33.8
Nitab4.5_0001287g0130 Nicotiana tabacum HOM05D000007 ORTHO05D020324 2.8e-06 56.6 108 31.5
RcHm_v2.0_Chr3g0456251 Rosa chinensis HOM05D000007 ORTHO05D000039 2.8e-06 56.6 93 34.4
TWI31G0323 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 2.8e-06 56.6 99 30.3
CANSAT64G0237 Cannabis sativa HOM05D000007 ORTHO05D000039 3.6e-06 56.2 103 32.0
Cc02_g15280 Coffea canephora HOM05D000021 ORTHO05D000010 3.6e-06 56.2 38 71.1
Cc02_g15310 Coffea canephora HOM05D000021 ORTHO05D000010 3.6e-06 56.2 38 71.1
Lsat_1_v5_gn_7_77020 Lactuca sativa HOM05D000007 ORTHO05D000039 3.6e-06 56.2 107 30.8
PSO339G2134 Papaver somniferum HOM05D000007 ORTHO05D000017 3.6e-06 56.2 96 30.2
RcHm_v2.0_Chr1g0344471 Rosa chinensis HOM05D000007 ORTHO05D000039 3.6e-06 56.2 98 31.6
SalBow1G0026 Salvia bowleyana HOM05D000021 ORTHO05D000010 3.6e-06 56.2 49 53.1
SalBow1G1711 Salvia bowleyana HOM05D000021 ORTHO05D000010 3.6e-06 56.2 48 56.2
SalBow1G1767 Salvia bowleyana HOM05D000021 ORTHO05D000010 3.6e-06 56.2 56 50.0
Sopen02g021420 Solanum pennellii HOM05D000021 ORTHO05D000010 3.6e-06 56.2 53 52.8
AUR62012546 Chenopodium quinoa HOM05D000007 ORTHO05D000017 4.8e-06 55.8 92 37.0
Ciclev10033971m.g Citrus clementina HOM05D000007 ORTHO05D000017 4.8e-06 55.8 96 31.2
Cc09_g05450 Coffea canephora HOM05D000021 ORTHO05D000010 4.8e-06 55.8 34 76.5
FAN11G1650 Fragaria x ananassa HOM05D000007 ORTHO05D000039 4.8e-06 55.8 98 35.7
FAN24G1599 Fragaria x ananassa HOM05D000007 ORTHO05D000039 4.8e-06 55.8 90 34.4
Lj1C674T8 Lonicera japonica HOM05D000007 ORTHO05D000039 4.8e-06 55.8 126 31.0
QL07p003314 Quercus lobata HOM05D000007 ORTHO05D000039 4.8e-06 55.8 95 34.7
SGA_v2.0_scaffold90G27944 Striga asiatica HOM05D000007 ORTHO05D000039 4.8e-06 55.8 111 29.7
EL10As6g23638 Beta vulgaris HOM05D000007 ORTHO05D000017 6.2e-06 55.5 144 31.2
Cc09_g05580 Coffea canephora HOM05D000021 ORTHO05D000010 6.2e-06 55.5 48 54.2
Migut.N00639 Erythranthe guttata HOM05D000021 ORTHO05D000010 6.2e-06 55.5 161 31.1
Manes.10G133200 Manihot esculenta HOM05D000007 ORTHO05D000039 6.2e-06 55.5 106 30.2
Prupe.6G320600 Prunus persica HOM05D000007 ORTHO05D000039 6.2e-06 55.5 99 31.3
QL04p037158 Quercus lobata HOM05D000007 ORTHO05D000039 6.2e-06 55.5 104 32.7
SalBow1G4457 Salvia bowleyana HOM05D000021 ORTHO05D000010 6.2e-06 55.5 47 57.4
SalBow7G1277 Salvia bowleyana HOM05D000021 ORTHO05D000010 6.2e-06 55.5 49 53.1
TWI18G1039 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 6.2e-06 55.5 112 28.6
Atru.chr13.1238 Acer truncatum HOM05D000007 ORTHO05D000017 8.1e-06 55.1 96 33.3
Ciclev10018659m.g Citrus clementina HOM05D000021 ORTHO05D000010 8.1e-06 55.1 48 58.3
Cc09_g05700 Coffea canephora HOM05D000021 ORTHO05D000010 8.1e-06 55.1 48 56.2
DCAR_010588 Daucus carota HOM05D000007 ORTHO05D000039 8.1e-06 55.1 110 28.2
DCAR_027926 Daucus carota HOM05D000007 ORTHO05D000039 8.1e-06 55.1 95 29.5
Migut.H01442 Erythranthe guttata HOM05D000021 ORTHO05D000010 8.1e-06 55.1 48 56.2
FAN21G2298 Fragaria x ananassa HOM05D000007 ORTHO05D000039 8.1e-06 55.1 96 31.2
Potri.017G058900 Populus trichocarpa HOM05D000007 ORTHO05D000017 8.1e-06 55.1 92 35.9
SalBow1G0538 Salvia bowleyana HOM05D000021 ORTHO05D000010 8.1e-06 55.1 49 53.1
SalBow1G6631 Salvia bowleyana HOM05D000021 ORTHO05D000010 8.1e-06 55.1 52 50.0
PGSC0003DMG400026173 Solanum tuberosum HOM05D000007 ORTHO05D000017 8.1e-06 55.1 121 29.8


User provided reference genes

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