Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 2.1e-76 288.9 141 100.0
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 4.0e-67 258.1 134 92.5
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 4.0e-67 258.1 134 92.5
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 7.1e-64 247.3 130 90.8
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 9.3e-64 246.9 130 90.0
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 2.1e-63 245.7 134 88.8
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 3.5e-63 245.0 134 89.6
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 7.8e-63 243.8 134 88.1
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 3.9e-62 241.5 136 87.5
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 2.0e-58 229.2 135 83.0
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 2.6e-58 228.8 134 80.6
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 1.7e-57 226.1 128 82.0
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 1.7e-57 226.1 134 79.9
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 2.2e-57 225.7 130 80.8
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 3.8e-57 224.9 134 79.9
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 8.4e-57 223.8 124 83.9
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 8.4e-57 223.8 134 78.4
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 8.4e-57 223.8 129 80.6
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 1.4e-56 223.0 124 83.9
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 1.9e-56 222.6 129 79.8
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 1.9e-56 222.6 131 78.6
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 2.4e-56 222.2 128 80.5
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 3.2e-56 221.9 129 79.8
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 4.2e-56 221.5 127 81.9
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 4.2e-56 221.5 124 83.1
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 4.2e-56 221.5 124 83.1
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 5.4e-56 221.1 129 80.6
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 5.4e-56 221.1 128 80.5
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 7.1e-56 220.7 124 83.1
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 9.3e-56 220.3 124 83.1
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 9.3e-56 220.3 124 82.3
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 2.1e-55 219.2 127 80.3
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 3.5e-55 218.4 134 76.1
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 3.5e-55 218.4 133 78.2
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 1.0e-54 216.9 127 79.5
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 1.3e-54 216.5 124 80.6
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 3.9e-54 214.9 124 79.0
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 3.9e-54 214.9 124 79.0
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 6.7e-54 214.2 124 78.2
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 6.7e-54 214.2 124 79.8
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 6.7e-54 214.2 124 79.8
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 1.1e-53 213.4 129 77.5
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 1.5e-53 213.0 130 76.2
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 1.5e-53 213.0 124 79.8
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.9e-53 212.6 129 76.7
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 1.9e-53 212.6 129 76.7
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 1.9e-53 212.6 127 80.3
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 1.9e-53 212.6 129 78.3
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 1.9e-53 212.6 128 76.6
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 2.5e-53 212.2 124 79.8
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 3.3e-53 211.8 124 79.8
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 3.3e-53 211.8 129 77.5
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 3.3e-53 211.8 124 78.2
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 4.3e-53 211.5 128 75.8
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 4.3e-53 211.5 131 74.8
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 4.3e-53 211.5 126 77.0
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 4.3e-53 211.5 124 76.6
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 5.6e-53 211.1 124 79.0
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 7.4e-53 210.7 124 79.0
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 7.4e-53 210.7 124 77.4
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 9.6e-53 210.3 124 79.0
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 9.6e-53 210.3 124 79.0
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 1.3e-52 209.9 118 81.4
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 1.6e-52 209.5 118 81.4
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.6e-52 209.5 129 76.0
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 2.1e-52 209.1 126 79.4
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 2.8e-52 208.8 129 74.4
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.8e-52 208.8 124 78.2
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.8e-52 208.8 124 78.2
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 6.2e-52 207.6 124 78.2
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 6.2e-52 207.6 124 77.4
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 8.1e-52 207.2 124 76.6
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 1.4e-51 206.5 177 60.5
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 1.4e-51 206.5 124 75.8
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 1.8e-51 206.1 124 75.0
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.4e-51 205.7 124 77.4
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 2.4e-51 205.7 124 74.2
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 4.0e-51 204.9 124 75.8
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 4.0e-51 204.9 124 75.8
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 5.3e-51 204.5 130 73.8
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 5.3e-51 204.5 124 75.0
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 9.0e-51 203.8 124 77.4
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 1.2e-50 203.4 124 75.8
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 2.6e-50 202.2 128 71.9
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 3.4e-50 201.8 124 72.6
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 3.4e-50 201.8 124 74.2
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 7.6e-50 200.7 124 72.6
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 7.6e-50 200.7 124 75.8
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 1.3e-49 199.9 124 74.2
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 6.4e-49 197.6 130 71.5
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 6.4e-49 197.6 124 71.8
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 2.4e-48 195.7 124 75.0
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 4.2e-48 194.9 124 72.6
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 5.5e-48 194.5 124 72.6
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 5.5e-48 194.5 124 72.6
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 5.5e-48 194.5 124 70.2
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 7.1e-48 194.1 124 72.6
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 9.3e-48 193.7 124 72.6
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 9.3e-48 193.7 125 72.0
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 1.6e-47 193.0 124 72.6
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 1.6e-47 193.0 124 72.6
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 1.6e-47 193.0 124 72.6
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 2.1e-47 192.6 124 75.0
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 3.5e-47 191.8 124 71.8
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 3.5e-47 191.8 124 71.8
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 3.5e-47 191.8 124 71.8
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 6.0e-47 191.0 124 72.6
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 3.9e-46 188.3 124 70.2
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 6.7e-46 187.6 128 71.9
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 8.7e-46 187.2 125 71.2
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 3.7e-44 181.8 109 74.3
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 4.0e-43 178.3 103 79.6
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 2.6e-42 175.6 129 69.0
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 1.0e-41 173.7 112 74.1
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 2.5e-37 159.1 86 90.7
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 1.8e-35 152.9 82 86.6
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 3.1e-35 152.1 82 81.7
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 1.5e-34 149.8 112 63.4
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 1.1e-32 143.7 84 78.6
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 2.8e-28 129.0 79 79.7
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 9.1e-27 124.0 102 57.8
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 1.2e-26 123.6 88 64.8
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 1.7e-25 119.8 89 62.9
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 9.4e-24 114.0 129 51.2
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 1.2e-23 113.6 65 83.1
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 5.1e-22 108.2 61 85.2
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 4.8e-20 101.7 84 58.3
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 9.1e-19 97.4 69 66.7
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 3.4e-18 95.5 69 66.7
Nitab4.5_0011266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 2.7e-15 85.9 60 81.7
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 1.8e-14 83.2 81 48.1
Nitab4.5_0005166g0030 Nicotiana tabacum HOM05D001081 ORTHO05D025899 6.7e-14 81.3 60 78.3
Zm00001eb266390 Zea mays HOM05D001081 ORTHO05D007101 6.7e-14 81.3 114 47.4
Nitab4.5_0026266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 1.1e-13 80.5 60 80.0
Nitab4.5_0008435g0040 Nicotiana tabacum HOM05D002996 ORTHO05D025899 3.3e-13 79.0 60 76.7
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 7.4e-13 77.8 48 75.0
DCAR_016735 Daucus carota HOM05D001081 ORTHO05D007101 3.5e-10 68.9 59 52.5
Actinidia15449 Actinidia chinensis HOM05D001081 ORTHO05D007101 2.2e-09 66.2 36 83.3
Nitab4.5_0002544g0090 Nicotiana tabacum HOM05D001081 ORTHO05D007101 3.8e-09 65.5 40 70.0


User provided reference genes

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