Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G411.11 Capsicum annuum HOM05D003182 ORTHO05D003829 1.7e-102 375.9 183 100.0
CAN.G1425.8 Capsicum annuum HOM05D003182 ORTHO05D003829 7.8e-63 244.2 136 89.0
CAN.G1469.10 Capsicum annuum HOM05D003182 ORTHO05D003829 5.2e-59 231.5 135 85.9
CAN.G206.33 Capsicum annuum HOM05D003182 ORTHO05D003829 2.7e-15 86.3 44 90.9
Nitab4.5_0003337g0070 Nicotiana tabacum HOM05D003182 ORTHO05D003829 6.0e-15 85.1 44 88.6
Nitab4.5_0005176g0070 Nicotiana tabacum HOM05D003182 ORTHO05D003829 6.0e-15 85.1 44 88.6
Peaxi162Scf00129g01034 Petunia axillaris HOM05D003182 ORTHO05D003829 6.0e-15 85.1 44 88.6
PGSC0003DMG402000497 Solanum tuberosum HOM05D003182 ORTHO05D003829 1.0e-14 84.3 44 86.4
Solyc02g086900.4 Solanum lycopersicum HOM05D003182 ORTHO05D003829 1.3e-14 84.0 44 84.1
Sopen02g031670 Solanum pennellii HOM05D003182 ORTHO05D003829 1.3e-14 84.0 44 84.1
Dinv24862 Davidia involucrata HOM05D003182 ORTHO05D003829 1.8e-14 83.6 44 86.4
PGSC0003DMG400030991 Solanum tuberosum HOM05D003182 ORTHO05D003829 1.8e-14 83.6 62 67.7
Cc07_g02310 Coffea canephora HOM05D003182 ORTHO05D003829 2.3e-14 83.2 44 81.8
CSS0022412 Camellia sinensis var. sinensis HOM05D003182 ORTHO05D003829 5.1e-14 82.0 44 84.1
Oeu018700.3 Olea europaea HOM05D003182 ORTHO05D003829 5.1e-14 82.0 44 84.1
Ciclev10031446m.g Citrus clementina HOM05D003182 ORTHO05D003829 6.7e-14 81.6 44 81.8
Nn3g16899 Nelumbo nucifera HOM05D003182 ORTHO05D003829 6.7e-14 81.6 44 84.1
CSS0021280 Camellia sinensis var. sinensis HOM05D003182 ORTHO05D003829 8.7e-14 81.3 44 81.8
CsaV3_3G042400 Cucumis sativus L. HOM05D003182 ORTHO05D003829 8.7e-14 81.3 43 86.0
Migut.H00124 Erythranthe guttata HOM05D003182 ORTHO05D003829 8.7e-14 81.3 44 84.1
Glyma.02G034400 Glycine max HOM05D003182 ORTHO05D003829 8.7e-14 81.3 61 65.6
Hma1.2p1_0867F.1_g230210 Hydrangea macrophylla HOM05D003182 ORTHO05D003829 8.7e-14 81.3 44 84.1
Lju41C35G6 Lonicera japonica HOM05D003182 ORTHO05D003829 8.7e-14 81.3 44 84.1
Oeu003450.3 Olea europaea HOM05D003182 ORTHO05D003829 8.7e-14 81.3 44 84.1
Sc16g0005420 Simmondsia chinensis HOM05D003182 ORTHO05D003829 8.7e-14 81.3 45 82.2
SGA_v2.0_scaffold165G38249 Striga asiatica HOM05D003182 ORTHO05D003829 8.7e-14 81.3 44 84.1
THA.LOC104805399 Tarenaya hassleriana HOM05D003182 ORTHO05D003829 8.7e-14 81.3 44 81.8
DCAR_011207 Daucus carota HOM05D003182 ORTHO05D003829 1.1e-13 80.9 44 84.1
Lj3C1051T18 Lonicera japonica HOM05D003182 ORTHO05D003829 1.1e-13 80.9 44 81.8
Oeu043063.1 Olea europaea HOM05D003182 ORTHO05D003829 1.1e-13 80.9 44 84.1
PSO063G3727 Papaver somniferum HOM05D003182 ORTHO05D003829 1.1e-13 80.9 44 81.8
PSO832G1777 Papaver somniferum HOM05D003182 ORTHO05D003829 1.1e-13 80.9 44 81.8
vmacro18240 Vaccinium macrocarpon HOM05D003182 ORTHO05D003829 1.1e-13 80.9 44 81.8
CANSAT64G2540 Cannabis sativa HOM05D003182 ORTHO05D003829 1.5e-13 80.5 43 83.7
Duzib147G1033 Durio zibethinus HOM05D003182 ORTHO05D003829 1.5e-13 80.5 44 81.8
Gohir.A11G067400 Gossypium hirsutum HOM05D003182 ORTHO05D003829 1.5e-13 80.5 44 81.8
Gohir.D11G071300 Gossypium hirsutum HOM05D003182 ORTHO05D003829 1.5e-13 80.5 44 81.8
Gorai.007G076600 Gossypium raimondii HOM05D003182 ORTHO05D003829 1.5e-13 80.5 44 81.8
Manes.12G029366 Manihot esculenta HOM05D003182 ORTHO05D003829 1.5e-13 80.5 44 79.5
Prupe.3G283700 Prunus persica HOM05D003182 ORTHO05D003829 1.5e-13 80.5 44 84.1
Thecc.04G008600 Theobroma cacao HOM05D003182 ORTHO05D003829 1.5e-13 80.5 44 81.8
Atru.chr11.2016 Acer truncatum HOM05D003182 ORTHO05D003829 1.9e-13 80.1 44 79.5
MSTRG.24015 Avicennia marina HOM05D003182 ORTHO05D003829 1.9e-13 80.1 44 81.8
Carub.0007s3536 Capsella rubella HOM05D003182 ORTHO05D003829 1.9e-13 80.1 44 81.8
Ciclev10017499m.g Citrus clementina HOM05D003182 ORTHO05D003829 1.9e-13 80.1 43 83.7
Dinv35057 Davidia involucrata HOM05D003182 ORTHO05D003829 1.9e-13 80.1 44 81.8
ECA233G4670 Erigeron canadensis HOM05D003182 ORTHO05D003829 1.9e-13 80.1 44 81.8
Sopen05g001610 Solanum pennellii HOM05D003182 ORTHO05D003829 1.9e-13 80.1 44 84.1
GSVIVG01032486001 Vitis vinifera HOM05D003182 ORTHO05D003829 1.9e-13 80.1 44 84.1
Atru.chr11.2009 Acer truncatum HOM05D003182 ORTHO05D003829 2.5e-13 79.7 44 77.3
CSS0050117 Camellia sinensis var. sinensis HOM05D003182 ORTHO05D003829 2.5e-13 79.7 44 81.8
Peaxi162Scf00338g00024 Petunia axillaris HOM05D003182 ORTHO05D003829 2.5e-13 79.7 42 85.7
Hund05992 Selenicereus undatus HOM05D003182 ORTHO05D003829 2.5e-13 79.7 62 61.3
Aa31LG9G1350 Aethionema arabicum HOM05D003182 ORTHO05D003829 3.3e-13 79.3 44 79.5
AL7G49710 Arabidopsis lyrata HOM05D003182 ORTHO05D003829 3.3e-13 79.3 44 79.5
BcaB06g27467 Brassica carinata HOM05D003182 ORTHO05D003829 3.3e-13 79.3 44 79.5
A04p13190 Brassica napus HOM05D003182 ORTHO05D003829 3.3e-13 79.3 44 79.5
C04p46940 Brassica napus HOM05D003182 ORTHO05D003829 3.3e-13 79.3 44 79.5
BolC4t26288H Brassica oleracea HOM05D003182 ORTHO05D003829 3.3e-13 79.3 44 79.5
BraA04t16978Z Brassica rapa HOM05D003182 ORTHO05D003829 3.3e-13 79.3 44 79.5
CARHR261820 Cardamine hirsuta HOM05D003182 ORTHO05D003829 3.3e-13 79.3 44 79.5
CiPaw.03G037600 Carya illinoinensis HOM05D003182 ORTHO05D003829 3.3e-13 79.3 43 81.4
COL.COLO4_28945 Corchorus olitorius HOM05D003182 ORTHO05D003829 3.3e-13 79.3 44 79.5
Haze_14666 Corylus avellana HOM05D003182 ORTHO05D003829 3.3e-13 79.3 44 81.8
Thhalv10027741m.g Eutrema salsugineum HOM05D003182 ORTHO05D003829 3.3e-13 79.3 44 79.5
HanXRQChr12g0368591 Helianthus annuus HOM05D003182 ORTHO05D003829 3.3e-13 79.3 62 64.5
RcHm_v2.0_Chr2g0171401 Rosa chinensis HOM05D003182 ORTHO05D003829 3.3e-13 79.3 44 81.8
SalBow2G3598 Salvia bowleyana HOM05D003182 ORTHO05D003829 3.3e-13 79.3 44 79.5
Sp7g01670 Schrenkiella parvula HOM05D003182 ORTHO05D003829 3.3e-13 79.3 44 79.5
TAR374G1615 Trochodendron aralioides HOM05D003182 ORTHO05D003829 3.3e-13 79.3 44 81.8
Actinidia35739 Actinidia chinensis HOM05D003182 ORTHO05D003829 4.3e-13 79.0 43 81.4
AL7G49680 Arabidopsis lyrata HOM05D003182 ORTHO05D003829 4.3e-13 79.0 44 77.3
Lsat_1_v5_gn_8_157280 Lactuca sativa HOM05D003182 ORTHO05D003829 4.3e-13 79.0 44 79.5
Sc11g0001200 Simmondsia chinensis HOM05D003182 ORTHO05D003829 4.3e-13 79.0 44 79.5
THA.LOC104825287 Tarenaya hassleriana HOM05D003182 ORTHO05D003829 4.3e-13 79.0 44 79.5
Cpa.g.sc69.27 Carica papaya HOM05D003182 ORTHO05D003829 5.7e-13 78.6 41 85.4
Lalb_Chr02g0160081 Lupinus albus HOM05D003182 ORTHO05D003829 5.7e-13 78.6 44 81.8
Lalb_Chr02g0160261 Lupinus albus HOM05D003182 ORTHO05D003829 5.7e-13 78.6 44 81.8
TPR.G2315 Trifolium pratense HOM05D003182 ORTHO05D003829 5.7e-13 78.6 44 81.8
GSVIVG01020236001 Vitis vinifera HOM05D003182 ORTHO05D003829 5.7e-13 78.6 44 79.5
Aqoxy3G02981 Aquilegia oxysepala HOM05D003182 ORTHO05D003829 7.4e-13 78.2 41 85.4
AT5G40290 Arabidopsis thaliana HOM05D003182 ORTHO05D003829 7.4e-13 78.2 41 85.4
AUR62005374 Chenopodium quinoa HOM05D003182 ORTHO05D003829 7.4e-13 78.2 42 81.0
AUR62014036 Chenopodium quinoa HOM05D003182 ORTHO05D003829 7.4e-13 78.2 42 81.0
COL.COLO4_36968 Corchorus olitorius HOM05D003182 ORTHO05D003829 7.4e-13 78.2 41 85.4
Migut.L01410 Erythranthe guttata HOM05D003182 ORTHO05D003829 7.4e-13 78.2 44 79.5
FvH4_6g50610 Fragaria vesca HOM05D003182 ORTHO05D003829 7.4e-13 78.2 44 79.5
FAN05G3372 Fragaria x ananassa HOM05D003182 ORTHO05D003829 7.4e-13 78.2 44 79.5
FAN09G2145 Fragaria x ananassa HOM05D003182 ORTHO05D003829 7.4e-13 78.2 44 79.5
FAN14G0389 Fragaria x ananassa HOM05D003182 ORTHO05D003829 7.4e-13 78.2 44 79.5
FAN14G5751 Fragaria x ananassa HOM05D003182 ORTHO05D003829 7.4e-13 78.2 44 79.5
Gohir.A03G140101 Gossypium hirsutum HOM05D003182 ORTHO05D003829 7.4e-13 78.2 41 85.4
Gorai.005G182900 Gossypium raimondii HOM05D003182 ORTHO05D003829 7.4e-13 78.2 41 85.4
Hma1.2p1_0802F.1_g220380 Hydrangea macrophylla HOM05D003182 ORTHO05D003829 7.4e-13 78.2 44 81.8
Thecc.02G248300 Theobroma cacao HOM05D003182 ORTHO05D003829 7.4e-13 78.2 41 85.4
TWI56G0688 Tripterygium wilfordii HOM05D003182 ORTHO05D003829 7.4e-13 78.2 44 79.5
EL10Ac4g08569 Beta vulgaris HOM05D003182 ORTHO05D003829 9.7e-13 77.8 44 79.5
Glyma.13G169200 Glycine max HOM05D003182 ORTHO05D003829 9.7e-13 77.8 44 79.5
Manes.15G182900 Manihot esculenta HOM05D003182 ORTHO05D003829 9.7e-13 77.8 43 81.4
Potri.009G147800 Populus trichocarpa HOM05D003182 ORTHO05D003829 9.7e-13 77.8 41 82.9
Rhsim08G0055300 Rhododendron simsii HOM05D003182 ORTHO05D003829 9.7e-13 77.8 44 79.5
Sed0022900 Sechium edule HOM05D003182 ORTHO05D003829 9.7e-13 77.8 43 83.7
Actinidia01705 Actinidia chinensis HOM05D003182 ORTHO05D003829 1.3e-12 77.4 63 61.9
Actinidia27785 Actinidia chinensis HOM05D003182 ORTHO05D003829 1.3e-12 77.4 63 61.9
arahy.Tifrunner.gnm1.ann1.5NVD8S Arachis hypogaea HOM05D003182 ORTHO05D003829 1.3e-12 77.4 44 81.8
arahy.Tifrunner.gnm1.ann1.L7KCN6 Arachis hypogaea HOM05D003182 ORTHO05D003829 1.3e-12 77.4 44 81.8
arahy.Tifrunner.gnm1.ann1.ZL6HLN Arachis hypogaea HOM05D003182 ORTHO05D003829 1.3e-12 77.4 44 81.8
Cc11_g14640 Coffea canephora HOM05D003182 ORTHO05D003829 1.3e-12 77.4 62 62.9
Haze_12174 Corylus avellana HOM05D003182 ORTHO05D003829 1.3e-12 77.4 42 81.0
Lj2g0017775 Lotus japonicus HOM05D003182 ORTHO05D003829 1.3e-12 77.4 44 81.8
Medtr6g007210 Medicago truncatula HOM05D003182 ORTHO05D003829 1.3e-12 77.4 44 81.8
Phvul.004G016800 Phaseolus vulgaris HOM05D003182 ORTHO05D003829 1.3e-12 77.4 44 81.8
QL03p061290 Quercus lobata HOM05D003182 ORTHO05D003829 1.3e-12 77.4 42 81.0
SGA_v2.0_scaffold205G41704 Striga asiatica HOM05D003182 ORTHO05D003829 1.3e-12 77.4 44 75.0
TAR622G1170 Trochodendron aralioides HOM05D003182 ORTHO05D003829 1.3e-12 77.4 44 79.5
VMungo0464G0504 Vigna mungo HOM05D003182 ORTHO05D003829 1.3e-12 77.4 44 81.8
Ca_04201_v3 Cicer arietinum L. HOM05D003182 ORTHO05D003829 1.6e-12 77.0 44 79.5
Dinv15303 Davidia involucrata HOM05D003182 ORTHO05D003829 1.6e-12 77.0 43 79.1
PGR083G0239 Punica granatum HOM05D003182 ORTHO05D003829 1.6e-12 77.0 42 83.3
PGR119G1400 Punica granatum HOM05D003182 ORTHO05D003829 1.6e-12 77.0 42 78.6
EL10Ac6g13670 Beta vulgaris HOM05D003182 ORTHO05D003829 2.2e-12 76.6 44 77.3
CiPaw.05G150700 Carya illinoinensis HOM05D003182 ORTHO05D003829 2.2e-12 76.6 41 82.9
Eucgr.J02205 Eucalyptus grandis HOM05D003182 ORTHO05D003829 2.2e-12 76.6 100 44.0
Gohir.D02G162900 Gossypium hirsutum HOM05D003182 ORTHO05D003829 2.2e-12 76.6 41 82.9
Nitab4.5_0000113g0300 Nicotiana tabacum HOM05D003182 ORTHO05D003829 2.2e-12 76.6 69 59.4
Ca_04599_v3 Cicer arietinum L. HOM05D003182 ORTHO05D003829 2.8e-12 76.3 62 58.1
FAN02G2729 Fragaria x ananassa HOM05D003182 ORTHO05D003829 2.8e-12 76.3 44 77.3
Glyma.19G009400 Glycine max HOM05D003182 ORTHO05D003829 2.8e-12 76.3 44 77.3
unitig_62.g23158 Utricularia gibba HOM05D003182 ORTHO05D003829 2.8e-12 76.3 44 75.0
Ah.02g129910 Amaranthus hybridus HOM05D003182 ORTHO05D003829 3.7e-12 75.9 62 58.1
DCAR_007091 Daucus carota HOM05D003182 ORTHO05D003829 3.7e-12 75.9 44 77.3
Duzib248G0927 Durio zibethinus HOM05D003182 ORTHO05D003829 3.7e-12 75.9 44 77.3
Medtr5g034420 Medicago truncatula HOM05D003182 ORTHO05D003829 3.7e-12 75.9 47 74.5
Potri.008G190200 Populus trichocarpa HOM05D003182 ORTHO05D003829 3.7e-12 75.9 44 77.3
Sabra08G0144400 Salix brachista HOM05D003182 ORTHO05D003829 3.7e-12 75.9 44 77.3
Zm00001eb126510 Zea mays HOM05D003182 ORTHO05D003829 3.7e-12 75.9 77 54.5
CAN.G376.8 Capsicum annuum HOM05D003182 ORTHO05D003829 4.8e-12 75.5 40 85.0
QL02p076707 Quercus lobata HOM05D003182 ORTHO05D003829 4.8e-12 75.5 41 82.9
Actinidia08167 Actinidia chinensis HOM05D003182 ORTHO05D003829 6.3e-12 75.1 44 77.3
ATR0730G138 Amborella trichopoda HOM05D003182 ORTHO05D003829 6.3e-12 75.1 42 78.6
Hund25344 Selenicereus undatus HOM05D003182 ORTHO05D003829 6.3e-12 75.1 44 77.3
TPR.G13577 Trifolium pratense HOM05D003182 ORTHO05D003829 6.3e-12 75.1 53 64.2
CANSAT01G2334 Cannabis sativa HOM05D003182 ORTHO05D003829 1.4e-11 73.9 44 75.0
Cpa.g.sc39.93 Carica papaya HOM05D003182 ORTHO05D003829 1.4e-11 73.9 40 85.0
FvH4_4g34540 Fragaria vesca HOM05D003182 ORTHO05D003829 1.4e-11 73.9 62 59.7
FAN12G1714 Fragaria x ananassa HOM05D003182 ORTHO05D003829 1.4e-11 73.9 62 59.7
MBI16_g36058_MAGBIO Magnolia biondii HOM05D003182 ORTHO05D003829 1.4e-11 73.9 55 61.8
Os01g0109300 Oryza sativa ssp. japonica HOM05D003182 ORTHO05D003829 1.4e-11 73.9 44 75.0
Psat2g106920 Pisum sativum HOM05D003182 ORTHO05D003829 1.4e-11 73.9 42 78.6
TWI18G0345 Tripterygium wilfordii HOM05D003182 ORTHO05D003829 1.4e-11 73.9 44 77.3
unitig_8.g3167 Utricularia gibba HOM05D003182 ORTHO05D003829 1.4e-11 73.9 62 56.5
AT5G40270 Arabidopsis thaliana HOM05D003182 ORTHO05D003829 1.8e-11 73.6 41 80.5
Mapoly0016s0133 Marchantia polymorpha HOM05D003182 ORTHO05D003829 1.8e-11 73.6 44 75.0
Sabra09G0114000 Salix brachista HOM05D003182 ORTHO05D003829 1.8e-11 73.6 41 80.5
Sabra09G0116500 Salix brachista HOM05D003182 ORTHO05D003829 1.8e-11 73.6 41 80.5
vmacro01182 Vaccinium macrocarpon HOM05D003182 ORTHO05D003829 1.8e-11 73.6 44 77.3
Ah.04g163460 Amaranthus hybridus HOM05D003182 ORTHO05D003829 2.4e-11 73.2 40 80.0
Rhsim12G0047300 Rhododendron simsii HOM05D003182 ORTHO05D003829 2.4e-11 73.2 44 77.3
RhsimUnG0091000 Rhododendron simsii HOM05D003182 ORTHO05D003829 2.4e-11 73.2 44 77.3
Zm00001eb334290 Zea mays HOM05D003182 ORTHO05D003829 2.4e-11 73.2 77 53.2
FAN07G1249 Fragaria x ananassa HOM05D003182 ORTHO05D003829 3.1e-11 72.8 44 72.7
FAN17G1146 Fragaria x ananassa HOM05D003182 ORTHO05D003829 3.1e-11 72.8 44 72.7
FAN22G1320 Fragaria x ananassa HOM05D003182 ORTHO05D003829 3.1e-11 72.8 44 72.7
HPP92_003803 Vanilla planifolia HOM05D003182 ORTHO05D003829 4.1e-11 72.4 50 68.0
MD09G1034800 Malus domestica HOM05D003182 ORTHO05D003829 6.9e-11 71.6 44 75.0
arahy.Tifrunner.gnm1.ann1.3N6FKX Arachis hypogaea HOM05D003182 ORTHO05D003829 9.0e-11 71.2 44 72.7
MBI14_g47599_MAGBIO Magnolia biondii HOM05D003182 ORTHO05D003829 9.0e-11 71.2 54 63.0
RcHm_v2.0_Chr4g0443921 Rosa chinensis HOM05D003182 ORTHO05D003829 9.0e-11 71.2 41 75.6
Solyc05g005600.1 Solanum lycopersicum HOM05D003182 ORTHO05D003829 9.0e-11 71.2 36 88.9
arahy.Tifrunner.gnm1.ann1.P43H24 Arachis hypogaea HOM05D003182 ORTHO05D003829 1.2e-10 70.9 44 72.7
Lalb_Chr05g0228151 Lupinus albus HOM05D003182 ORTHO05D003829 1.2e-10 70.9 66 51.5
MD16G1092000 Malus domestica HOM05D003182 ORTHO05D003829 1.2e-10 70.9 44 68.2
Nitab4.5_0018380g0010 Nicotiana tabacum HOM05D003182 ORTHO05D003829 1.2e-10 70.9 92 45.7
MBI14_g43980_MAGBIO Magnolia biondii HOM05D003182 ORTHO05D003829 2.0e-10 70.1 42 76.2
Prupe.1G254300 Prunus persica HOM05D003182 ORTHO05D003829 1.3e-09 67.4 44 70.5
Pp3c17_2920 Physcomitrium patens HOM05D003182 ORTHO05D003829 1.7e-09 67.0 41 73.2
SEGI_37434 Sequoiadendron giganteum HOM05D003182 ORTHO05D003829 2.2e-09 66.6 44 70.5
SMO356G0066 Selaginella moellendorffii HOM05D003182 ORTHO05D003829 8.5e-09 64.7 33 84.8
SMO141G0095 Selaginella moellendorffii HOM05D003182 ORTHO05D003829 3.2e-08 62.8 79 46.8
SGA_v2.0_scaffold399G50806 Striga asiatica HOM05D005821 ORTHO05D006649 4.2e-08 62.4 44 68.2
SMO170G0050 Selaginella moellendorffii HOM05D003182 ORTHO05D003829 5.5e-08 62.0 72 47.2
MELO3C027442.2 Cucumis melo HOM05D007588 ORTHO05D001339 2.7e-07 59.7 47 61.7


User provided reference genes

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