Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 1.5e-159 566.2 297 100.0
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 7.0e-130 467.6 308 81.8
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 4.6e-129 464.9 306 81.7
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 7.5e-124 447.6 298 81.2
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 7.0e-122 441.0 310 78.1
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.1e-117 427.2 307 76.5
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 5.8e-116 421.4 288 77.1
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 2.0e-100 369.8 304 65.1
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 1.3e-99 367.1 307 64.2
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 8.4e-99 364.4 280 66.8
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 9.3e-98 360.9 307 63.2
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 9.3e-98 360.9 267 68.9
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 2.1e-97 359.8 277 68.2
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 1.3e-96 357.1 218 79.4
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 2.3e-96 356.3 220 79.1
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 2.3e-96 356.3 220 79.1
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 2.5e-95 352.8 234 73.9
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 7.3e-95 351.3 227 76.2
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 1.3e-94 350.5 235 74.9
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 1.6e-94 350.1 238 74.4
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 8.1e-94 347.8 214 79.0
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 1.2e-92 344.0 217 76.5
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 2.0e-92 343.2 228 74.1
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 7.6e-92 341.3 214 77.1
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 2.9e-91 339.3 267 64.8
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 3.8e-91 339.0 238 72.7
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 1.1e-90 337.4 275 65.5
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 2.4e-90 336.3 241 71.4
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 3.2e-90 335.9 214 75.2
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 5.4e-90 335.1 274 65.0
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 9.3e-90 334.3 214 76.6
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 1.6e-89 333.6 253 66.4
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 2.1e-89 333.2 223 73.1
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 2.1e-89 333.2 227 73.1
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 2.7e-89 332.8 216 74.5
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 7.9e-89 331.3 238 68.5
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 1.0e-88 330.9 268 65.3
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 1.8e-88 330.1 221 74.7
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 3.0e-88 329.3 245 69.8
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 3.9e-88 328.9 263 63.5
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 5.1e-88 328.6 261 65.5
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 5.1e-88 328.6 278 63.7
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 8.7e-88 327.8 233 71.2
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 8.7e-88 327.8 269 63.2
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 1.1e-87 327.4 220 72.7
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 1.5e-87 327.0 219 73.1
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 2.5e-87 326.2 230 70.9
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 2.5e-87 326.2 259 64.1
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 5.6e-87 325.1 225 71.6
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 5.6e-87 325.1 213 72.8
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 9.6e-87 324.3 212 74.1
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 9.6e-87 324.3 228 70.2
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 2.1e-86 323.2 225 71.1
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 2.1e-86 323.2 225 71.1
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 2.1e-86 323.2 257 65.4
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 2.8e-86 322.8 222 72.5
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 4.8e-86 322.0 222 72.1
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 4.8e-86 322.0 221 71.9
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 8.1e-86 321.2 235 68.5
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 1.1e-85 320.9 225 70.7
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 1.1e-85 320.9 214 72.9
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.4e-85 320.5 242 68.2
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 4.0e-85 318.9 235 68.1
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 4.0e-85 318.9 274 62.0
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 5.3e-85 318.5 221 71.0
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 5.3e-85 318.5 218 72.5
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 1.2e-84 317.4 274 61.7
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 1.5e-84 317.0 212 73.1
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 1.5e-84 317.0 224 69.6
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 2.6e-84 316.2 209 73.2
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 3.4e-84 315.8 215 73.0
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 3.4e-84 315.8 219 71.2
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 9.9e-84 314.3 231 68.0
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 9.9e-84 314.3 212 73.6
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 9.9e-84 314.3 267 61.8
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 1.7e-83 313.5 274 61.7
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 1.7e-83 313.5 215 73.0
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 2.2e-83 313.2 216 71.8
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 2.9e-83 312.8 220 69.1
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 3.8e-83 312.4 260 62.3
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 3.8e-83 312.4 263 62.4
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 3.8e-83 312.4 263 62.7
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 3.8e-83 312.4 263 62.4
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 4.9e-83 312.0 214 71.5
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 6.4e-83 311.6 220 70.0
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 6.4e-83 311.6 220 70.0
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 6.4e-83 311.6 220 70.0
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 6.4e-83 311.6 220 70.0
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 6.4e-83 311.6 220 70.0
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 6.4e-83 311.6 249 64.7
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 1.9e-82 310.1 263 62.0
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 1.9e-82 310.1 212 74.5
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 2.5e-82 309.7 222 71.6
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 2.5e-82 309.7 223 67.3
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 3.2e-82 309.3 229 68.6
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 3.2e-82 309.3 213 73.7
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 7.1e-82 308.1 221 70.6
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 7.1e-82 308.1 220 68.2
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 9.3e-82 307.8 217 68.2
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 9.3e-82 307.8 217 69.6
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 1.6e-81 307.0 285 57.5
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 1.6e-81 307.0 236 65.3
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 2.7e-81 306.2 214 70.1
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 7.9e-81 304.7 250 67.2
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 7.9e-81 304.7 222 67.6
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 3.0e-80 302.8 215 68.8
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 4.3e-79 298.9 222 67.1
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 5.6e-79 298.5 174 83.9
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 7.4e-79 298.1 216 67.1
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 2.1e-78 296.6 215 67.4
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 2.8e-78 296.2 220 65.5
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 1.8e-77 293.5 207 70.0
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 4.0e-77 292.4 218 67.9
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 6.9e-77 291.6 214 70.1
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 6.9e-77 291.6 208 70.7
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 9.0e-77 291.2 214 68.7
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 2.0e-76 290.0 234 66.7
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 5.8e-76 288.5 208 70.2
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 1.0e-75 287.7 215 68.4
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 2.9e-75 286.2 215 67.9
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 2.9e-75 286.2 215 67.9
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 3.8e-75 285.8 215 67.0
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 8.4e-75 284.6 215 67.0
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 1.9e-74 283.5 213 67.6
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.5e-74 283.1 210 67.6
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 9.3e-74 281.2 212 67.9
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 9.3e-74 281.2 215 67.4
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 1.2e-73 280.8 267 56.2
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 1.6e-73 280.4 274 57.3
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 6.0e-73 278.5 204 69.6
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 3.0e-72 276.2 178 75.3
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 2.2e-70 270.0 216 60.6
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 2.2e-70 270.0 185 71.9
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 4.8e-70 268.9 216 61.6
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 2.4e-69 266.5 226 58.4
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 2.4e-69 266.5 215 60.0
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 2.4e-69 266.5 215 60.0
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 5.3e-69 265.4 215 60.0
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 5.3e-69 265.4 215 60.0
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 5.3e-69 265.4 215 60.0
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 8.5e-67 258.1 294 53.1
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 1.9e-66 256.9 226 62.8
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 1.9e-66 256.9 219 60.7
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 2.5e-66 256.5 244 57.8
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.5e-55 220.7 289 46.0
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 3.3e-55 219.5 251 50.6
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 2.8e-54 216.5 198 54.0
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 3.7e-54 216.1 133 77.4
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 1.1e-53 214.5 244 52.5
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 3.1e-53 213.0 215 53.0
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 1.2e-52 211.1 147 71.4
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 3.5e-52 209.5 147 70.7
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 4.4e-47 192.6 215 49.8
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 1.6e-44 184.1 208 45.7
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 7.7e-44 181.8 182 54.4
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 7.0e-37 158.7 173 43.9
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 8.5e-35 151.8 190 50.5
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 8.3e-30 135.2 108 66.7
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 8.6e-27 125.2 65 86.2
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 3.6e-17 93.2 74 58.1
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 2.3e-16 90.5 65 66.2
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 4.0e-16 89.7 71 67.6
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 9.2e-13 78.6 89 44.9
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 7.8e-12 75.5 70 50.0
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 3.4e-07 60.1 75 48.0
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 2.2e-06 57.4 34 73.5


User provided reference genes

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