Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G407.74 Capsicum annuum HOM05D007527 ORTHO05D009523 8.0e-68 260.4 140 100.0
PGSC0003DMG400000643 Solanum tuberosum HOM05D007527 ORTHO05D009523 4.4e-50 201.4 137 79.6
Sopen03g035730 Solanum pennellii HOM05D007527 ORTHO05D009523 7.1e-48 194.1 137 78.1
Solyc03g116800.4 Solanum lycopersicum HOM05D007527 ORTHO05D009523 2.1e-47 192.6 137 78.8
Nitab4.5_0003463g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 3.0e-46 188.7 142 74.6
Nitab4.5_0008560g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 4.0e-43 178.3 142 72.5
Peaxi162Scf00332g00530 Petunia axillaris HOM05D007527 ORTHO05D009523 5.8e-34 147.9 135 65.9
Nitab4.5_0006484g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 4.0e-27 125.2 106 68.9
COL.COLO4_11916 Corchorus olitorius HOM05D007527 ORTHO05D009523 5.1e-22 108.2 96 56.2
Gohir.A09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 2.8e-20 102.4 91 54.9
Gohir.D09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 6.2e-20 101.3 90 54.4
Gorai.006G101400 Gossypium raimondii HOM05D007527 ORTHO05D009523 6.2e-20 101.3 90 54.4
Thecc.06G029900 Theobroma cacao HOM05D007527 ORTHO05D009523 1.1e-19 100.5 91 54.9
Actinidia15754 Actinidia chinensis HOM05D007527 ORTHO05D009523 6.9e-19 97.8 105 50.5
vmacro16881 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 4.5e-18 95.1 90 51.1
Rhsim12G0190600 Rhododendron simsii HOM05D007527 ORTHO05D009523 1.3e-17 93.6 90 51.1
GSVIVG01017356001 Vitis vinifera HOM05D007527 ORTHO05D009523 4.9e-17 91.7 95 55.8
Thhalv10021721m.g Eutrema salsugineum HOM05D007527 ORTHO05D009523 8.4e-17 90.9 110 48.2
Duzib160G0519 Durio zibethinus HOM05D007527 ORTHO05D009523 1.1e-16 90.5 120 41.7
Dinv30616 Davidia involucrata HOM05D007527 ORTHO05D009523 1.9e-16 89.7 90 53.3
MSTRG.5063 Avicennia marina HOM05D007527 ORTHO05D009523 3.2e-16 89.0 136 46.3
AL3G28550 Arabidopsis lyrata HOM05D007527 ORTHO05D009523 4.2e-16 88.6 130 41.5
Sp3g14230 Schrenkiella parvula HOM05D007527 ORTHO05D009523 5.5e-16 88.2 127 44.1
Atru.chr1.2902 Acer truncatum HOM05D007527 ORTHO05D009523 7.1e-16 87.8 108 50.0
TAR383G1076 Trochodendron aralioides HOM05D007527 ORTHO05D009523 7.1e-16 87.8 102 49.0
SGA_v2.0_scaffold43G16304 Striga asiatica HOM05D007527 ORTHO05D009523 2.1e-15 86.3 129 46.5
Cpa.g.sc67.40 Carica papaya HOM05D007527 ORTHO05D009523 2.7e-15 85.9 133 42.9
Migut.N01835 Erythranthe guttata HOM05D007527 ORTHO05D009523 2.7e-15 85.9 130 41.5
CSS0000513 Camellia sinensis var. sinensis HOM05D007527 ORTHO05D009523 3.5e-15 85.5 97 51.5
Lsat_1_v5_gn_5_131420 Lactuca sativa HOM05D007527 ORTHO05D009523 4.6e-15 85.1 151 40.4
Hma1.2p1_0242F.1_g100670 Hydrangea macrophylla HOM05D007527 ORTHO05D009523 6.0e-15 84.7 97 53.6
A01p38200 Brassica napus HOM05D007527 ORTHO05D009523 7.9e-15 84.3 65 60.0
BraA01t03878Z Brassica rapa HOM05D007527 ORTHO05D009523 7.9e-15 84.3 65 60.0
TWI12G0113 Tripterygium wilfordii HOM05D007527 ORTHO05D009523 1.3e-14 83.6 109 52.3
BcaC09g48568 Brassica carinata HOM05D007527 ORTHO05D009523 2.3e-14 82.8 96 46.9
C01p48470 Brassica napus HOM05D007527 ORTHO05D009523 2.3e-14 82.8 96 46.9
BolC1t04807H Brassica oleracea HOM05D007527 ORTHO05D009523 2.3e-14 82.8 96 46.9
Cfa001953 Carpinus fangiana HOM05D007527 ORTHO05D009523 8.7e-14 80.9 151 37.7
Ciclev10026543m.g Citrus clementina HOM05D007527 ORTHO05D009523 1.1e-13 80.5 96 51.0
CsaV3_4G001960 Cucumis sativus L. HOM05D007527 ORTHO05D009523 2.5e-13 79.3 74 56.8
Ah.01g006590 Amaranthus hybridus HOM05D007527 ORTHO05D009523 3.3e-13 79.0 67 61.2
Cc04_g04490 Coffea canephora HOM05D007527 ORTHO05D009523 4.3e-13 78.6 133 41.4
DCAR_021351 Daucus carota HOM05D002695 ORTHO05D002964 4.3e-13 78.6 108 46.3
Eucgr.B02436 Eucalyptus grandis HOM05D007527 ORTHO05D009523 4.3e-13 78.6 136 39.0
Lalb_Chr24g0395451 Lupinus albus HOM05D007527 ORTHO05D009523 4.3e-13 78.6 86 53.5
VMungo1080G0810 Vigna mungo HOM05D007527 ORTHO05D009523 4.3e-13 78.6 91 48.4
AT3G15900 Arabidopsis thaliana HOM05D007527 ORTHO05D009523 5.7e-13 78.2 137 41.6
CDE03G0516 Ceratophyllum demersum HOM05D007527 ORTHO05D009523 5.7e-13 78.2 115 39.1
Sed0020992 Sechium edule HOM05D007527 ORTHO05D009523 5.7e-13 78.2 88 51.1
arahy.Tifrunner.gnm1.ann1.HBF5UW Arachis hypogaea HOM05D007527 ORTHO05D009523 7.4e-13 77.8 107 47.7
arahy.Tifrunner.gnm1.ann1.JM0XW1 Arachis hypogaea HOM05D007527 ORTHO05D009523 7.4e-13 77.8 107 47.7
MELO3C017840.2 Cucumis melo HOM05D007527 ORTHO05D009523 7.4e-13 77.8 78 53.8
Potri.001G202000 Populus trichocarpa HOM05D007527 ORTHO05D009523 1.3e-12 77.0 54 70.4
CiPaw.01G249100 Carya illinoinensis HOM05D007527 ORTHO05D009523 1.6e-12 76.6 93 48.4
ECA234G1859 Erigeron canadensis HOM05D007527 ORTHO05D009523 1.6e-12 76.6 63 58.7
BcaB04g20897 Brassica carinata HOM05D007527 ORTHO05D009523 2.1e-12 76.3 130 40.0
FAN05G4324 Fragaria x ananassa HOM05D007527 ORTHO05D009523 4.8e-12 75.1 127 42.5
Nn8g39533 Nelumbo nucifera HOM05D007527 ORTHO05D009523 4.8e-12 75.1 66 56.1
Sc07g0004280 Simmondsia chinensis HOM05D007527 ORTHO05D009523 4.8e-12 75.1 124 44.4
FAN02G0939 Fragaria x ananassa HOM05D007527 ORTHO05D009523 6.3e-12 74.7 78 53.8
Aqoxy7G01859 Aquilegia oxysepala HOM05D007527 ORTHO05D009523 8.2e-12 74.3 70 54.3
ClCG07G012200 Citrullus lanatus HOM05D007527 ORTHO05D009523 8.2e-12 74.3 119 43.7
RcHm_v2.0_Chr2g0134671 Rosa chinensis HOM05D007527 ORTHO05D009523 8.2e-12 74.3 64 59.4
Manes.11G058100 Manihot esculenta HOM05D007527 ORTHO05D009523 1.1e-11 73.9 60 61.7
Psat5g303480 Pisum sativum HOM05D007527 ORTHO05D009523 1.1e-11 73.9 106 44.3
Phvul.005G178900 Phaseolus vulgaris HOM05D007527 ORTHO05D009523 1.8e-11 73.2 97 44.3
FvH4_6g29470 Fragaria vesca HOM05D007527 ORTHO05D009523 2.4e-11 72.8 137 38.7
Carub.0003s1564 Capsella rubella HOM05D007527 ORTHO05D009523 4.1e-11 72.0 134 41.8
Manes.04G111800 Manihot esculenta HOM05D007527 ORTHO05D009523 4.1e-11 72.0 77 55.8
RcHm_v2.0_Chr2g0134751 Rosa chinensis HOM05D007527 ORTHO05D009523 4.1e-11 72.0 89 46.1
FAN09G0177 Fragaria x ananassa HOM05D007527 ORTHO05D009523 5.3e-11 71.6 106 44.3
PSO017G1806 Papaver somniferum HOM05D007527 ORTHO05D009523 5.3e-11 71.6 61 59.0
PSO170G5637 Papaver somniferum HOM05D007527 ORTHO05D009523 5.3e-11 71.6 57 63.2
FAN14G2734 Fragaria x ananassa HOM05D007527 ORTHO05D009523 6.9e-11 71.2 137 38.0
Aa31LG8G3080 Aethionema arabicum HOM05D007527 ORTHO05D009523 1.2e-10 70.5 106 40.6
Glyma.15G006800 Glycine max HOM05D007527 ORTHO05D009523 1.2e-10 70.5 109 42.2
Haze_16571 Corylus avellana HOM05D007527 ORTHO05D009523 1.5e-10 70.1 141 36.9
PGR102G2450 Punica granatum HOM05D007527 ORTHO05D009523 1.5e-10 70.1 105 46.7
CARHR091010 Cardamine hirsuta HOM05D007527 ORTHO05D009523 2.0e-10 69.7 46 67.4
CDE04G3040 Ceratophyllum demersum HOM05D002695 ORTHO05D002964 2.0e-10 69.7 89 39.3
Medtr2g104040 Medicago truncatula HOM05D007527 ORTHO05D009523 2.0e-10 69.7 58 62.1
HanXRQChr10g0302821 Helianthus annuus HOM05D007527 ORTHO05D009523 2.6e-10 69.3 57 61.4
Sabra03G0018000 Salix brachista HOM05D007527 ORTHO05D009523 5.9e-10 68.2 136 37.5
Lj3g0017680 Lotus japonicus HOM05D007527 ORTHO05D009523 7.6e-10 67.8 108 38.9
MBI15_g00959_MAGBIO Magnolia biondii HOM05D007527 ORTHO05D009523 7.6e-10 67.8 65 55.4
Os02g0804400 Oryza sativa ssp. japonica HOM05D007527 ORTHO05D009523 1.0e-09 67.4 61 54.1
vmacro07515 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 1.0e-09 67.4 57 59.6
RcHm_v2.0_Chr2g0134971 Rosa chinensis HOM05D007527 ORTHO05D009523 1.7e-09 66.6 54 61.1
Hund06552 Selenicereus undatus HOM05D007527 ORTHO05D009523 1.7e-09 66.6 105 42.9
CANSAT56G2488 Cannabis sativa HOM05D007527 ORTHO05D009523 2.2e-09 66.2 124 40.3
MD17G1213600 Malus domestica HOM05D007527 ORTHO05D009523 2.2e-09 66.2 93 40.9
HPP92_017057 Vanilla planifolia HOM05D007527 ORTHO05D009523 3.8e-09 65.5 126 38.1
ATR0716G018 Amborella trichopoda HOM05D007527 ORTHO05D009523 6.5e-09 64.7 62 50.0
Prupe.3G089500 Prunus persica HOM05D007527 ORTHO05D009523 3.2e-08 62.4 100 40.0
Zm00001eb192090 Zea mays HOM05D007527 ORTHO05D009523 1.2e-07 60.5 77 42.9
vmacro16888 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 1.6e-07 60.1 52 55.8
Pp3c10_2350 Physcomitrium patens HOM05D007527 ORTHO05D009523 1.0e-06 57.4 67 43.3
Nitab4.5_0003301g0030 Nicotiana tabacum HOM05D007527 ORTHO05D009523 8.7e-06 54.3 28 92.9


User provided reference genes

Program Settings