Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G407.126 Capsicum annuum HOM05D052235 ORTHO05D020275 2.9e-125 451.8 217 100.0
CAN.G407.125 Capsicum annuum HOM05D000017 ORTHO05D000013 5.5e-31 138.7 90 71.1
CAN.G939.24 Capsicum annuum HOM05D052235 ORTHO05D020275 1.0e-24 117.9 78 73.1
Solyc11g020130.3 Solanum lycopersicum HOM05D028948 ORTHO05D020275 1.3e-11 74.3 90 47.8
PGSC0003DMG400019517 Solanum tuberosum HOM05D013963 ORTHO05D018679 2.8e-11 73.2 104 48.1
PGSC0003DMG400002442 Solanum tuberosum HOM05D000242 ORTHO05D020275 2.4e-10 70.1 82 43.9
CAN.G837.4 Capsicum annuum HOM05D013963 ORTHO05D115759 1.0e-08 64.7 95 45.3
CAN.G1715.2 Capsicum annuum HOM05D001135 ORTHO05D001005 1.3e-08 64.3 38 78.9
PGSC0003DMG400019538 Solanum tuberosum HOM05D013963 ORTHO05D018679 1.3e-08 64.3 94 43.6
Sopen03g035170 Solanum pennellii HOM05D000242 ORTHO05D020275 5.0e-08 62.4 60 50.0
Hund12223 Selenicereus undatus HOM05D000242 ORTHO05D000700 1.1e-07 61.2 47 55.3
CAN.G407.127 Capsicum annuum HOM05D028948 ORTHO05D020275 1.9e-07 60.5 109 39.4
Carub.0003s0389 Capsella rubella HOM05D002072 ORTHO05D001634 3.2e-07 59.7 68 42.6
Ah.02g126270 Amaranthus hybridus HOM05D019564 ORTHO05D021185 4.2e-07 59.3 63 44.4
Peaxi162Scf00078g01219 Petunia axillaris HOM05D000242 ORTHO05D000700 4.2e-07 59.3 82 40.2
Manes.08G135400 Manihot esculenta HOM05D002072 ORTHO05D001634 5.5e-07 58.9 44 54.5
Rhsim10G0202100 Rhododendron simsii HOM05D000242 ORTHO05D000700 5.5e-07 58.9 66 40.9
Hund12188 Selenicereus undatus HOM05D000242 ORTHO05D000700 5.5e-07 58.9 47 53.2
Sc23g0000650 Simmondsia chinensis HOM05D006933 ORTHO05D001634 5.5e-07 58.9 50 46.0
Solyc03g116230.4 Solanum lycopersicum HOM05D013963 ORTHO05D051220 5.5e-07 58.9 93 44.1
PGSC0003DMG400032527 Solanum tuberosum HOM05D000242 ORTHO05D018679 7.2e-07 58.5 82 43.9
CSS0043153 Camellia sinensis var. sinensis HOM05D000242 ORTHO05D000700 9.4e-07 58.2 58 46.6
CSS0047426 Camellia sinensis var. sinensis HOM05D000242 ORTHO05D000700 9.4e-07 58.2 58 46.6
DCAR_006242 Daucus carota HOM05D000242 ORTHO05D000700 1.2e-06 57.8 47 53.2
Dinv20295 Davidia involucrata HOM05D002072 ORTHO05D001634 1.2e-06 57.8 57 45.6
Manes.08G135300 Manihot esculenta HOM05D002072 ORTHO05D001634 1.2e-06 57.8 44 54.5
Eucgr.I01495 Eucalyptus grandis HOM05D000242 ORTHO05D000700 2.1e-06 57.0 40 60.0
PGR142G2152 Punica granatum HOM05D000242 ORTHO05D000700 2.1e-06 57.0 40 57.5
Sc23g0000670 Simmondsia chinensis HOM05D008012 ORTHO05D010154 2.1e-06 57.0 54 44.4
PGSC0003DMG400000645 Solanum tuberosum HOM05D013963 ORTHO05D395664 2.7e-06 56.6 87 41.4
CANSAT54G3031 Cannabis sativa HOM05D002072 ORTHO05D001634 3.6e-06 56.2 49 53.1
Cc07_g11550 Coffea canephora HOM05D000242 ORTHO05D000700 3.6e-06 56.2 41 56.1
Solyc07g009500.3 Solanum lycopersicum HOM05D000242 ORTHO05D001634 3.6e-06 56.2 48 50.0
Solyc07g009510.1 Solanum lycopersicum HOM05D000242 ORTHO05D001634 3.6e-06 56.2 48 50.0
Sopen00g008380 Solanum pennellii HOM05D000242 ORTHO05D001634 3.6e-06 56.2 48 50.0
Sopen07g005300 Solanum pennellii HOM05D000242 ORTHO05D001634 3.6e-06 56.2 48 50.0
Medtr7g115220 Medicago truncatula HOM05D002072 ORTHO05D001634 4.7e-06 55.8 57 43.9
CAN.G837.6 Capsicum annuum HOM05D013963 ORTHO05D018679 6.1e-06 55.5 77 35.1
Manes.18G145733 Manihot esculenta HOM05D000242 ORTHO05D001634 6.1e-06 55.5 55 45.5
SEGI_21618 Sequoiadendron giganteum HOM05D000242 ORTHO05D000700 6.1e-06 55.5 98 31.6
PGSC0003DMG400020703 Solanum tuberosum HOM05D000242 ORTHO05D001634 6.1e-06 55.5 48 50.0
CAN.G837.5 Capsicum annuum HOM05D013963 ORTHO05D018679 7.9e-06 55.1 66 37.9
FvH4_2g16190 Fragaria vesca HOM05D000242 ORTHO05D000700 7.9e-06 55.1 40 57.5
FAN24G0440 Fragaria x ananassa HOM05D000242 ORTHO05D000700 7.9e-06 55.1 40 57.5
FAN24G2936 Fragaria x ananassa HOM05D000242 ORTHO05D000700 7.9e-06 55.1 40 57.5
Hma1.2p1_0674F.1_g201570 Hydrangea macrophylla HOM05D000242 ORTHO05D000700 7.9e-06 55.1 51 49.0
Hund27016 Selenicereus undatus HOM05D000242 ORTHO05D000700 7.9e-06 55.1 59 45.8
PGSC0003DMG400019539 Solanum tuberosum HOM05D019564 ORTHO05D021185 7.9e-06 55.1 88 39.8
TWI79G1595 Tripterygium wilfordii HOM05D000242 ORTHO05D000700 7.9e-06 55.1 45 55.6
vmacro13826 Vaccinium macrocarpon HOM05D002072 ORTHO05D001634 7.9e-06 55.1 42 50.0


User provided reference genes

Program Settings