Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 1.4e-184 649.4 330 100.0
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 2.3e-161 572.4 330 87.6
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 2.3e-161 572.4 329 87.5
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 2.6e-157 558.9 336 85.1
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 5.7e-157 557.8 330 86.1
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 1.7e-156 556.2 330 85.8
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 7.0e-155 550.8 325 86.2
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 1.0e-121 440.7 331 68.3
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 2.6e-117 426.0 331 66.5
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 3.2e-115 419.1 333 64.3
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 9.3e-115 417.5 331 66.8
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 5.1e-113 411.8 327 64.5
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 2.1e-111 406.4 329 62.3
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 8.1e-111 404.4 329 63.5
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 1.8e-110 403.3 330 63.0
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 2.4e-110 402.9 332 62.7
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 6.9e-110 401.4 327 63.0
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 2.6e-109 399.4 328 62.8
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 3.4e-109 399.1 330 61.5
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 7.6e-109 397.9 317 65.9
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 2.9e-108 396.0 329 64.1
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 8.4e-108 394.4 333 62.5
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 1.6e-106 390.2 325 62.8
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 4.6e-106 388.7 332 60.5
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 7.9e-106 387.9 325 62.5
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 1.3e-105 387.1 329 62.6
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 6.7e-105 384.8 332 59.6
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 2.5e-104 382.9 293 67.9
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 2.5e-104 382.9 326 60.4
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 2.5e-104 382.9 333 61.3
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 2.5e-104 382.9 325 63.1
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 5.6e-104 381.7 256 72.7
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 1.6e-103 380.2 330 63.0
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 3.7e-103 379.0 317 62.5
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.8e-103 378.6 323 61.3
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 1.1e-102 377.5 334 60.2
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.1e-102 377.5 332 60.2
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 1.8e-102 376.7 303 64.7
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 5.3e-102 375.2 330 57.6
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 5.3e-102 375.2 332 58.4
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 1.5e-101 373.6 328 58.2
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.5e-101 373.6 296 66.2
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.5e-101 372.1 297 66.3
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 4.5e-101 372.1 296 65.9
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 5.8e-101 371.7 324 59.3
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 1.7e-100 370.2 328 57.6
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 2.2e-100 369.8 330 60.0
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 8.4e-100 367.9 296 64.5
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 1.4e-99 367.1 253 71.9
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 4.2e-99 365.5 303 60.7
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 2.1e-98 363.2 328 58.2
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 1.0e-97 360.9 337 59.3
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 1.0e-97 360.9 308 61.0
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 1.3e-97 360.5 303 61.1
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 1.3e-97 360.5 301 59.8
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 1.3e-97 360.5 301 59.8
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 1.3e-97 360.5 303 59.7
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 2.3e-97 359.8 303 59.7
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 8.7e-97 357.8 310 60.3
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 8.7e-97 357.8 325 57.8
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 1.1e-96 357.5 307 59.9
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.1e-96 357.5 333 57.7
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.1e-96 357.5 328 57.6
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 1.9e-96 356.7 332 59.3
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 1.9e-96 356.7 306 61.4
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 3.3e-96 355.9 301 59.1
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 3.3e-96 355.9 335 55.2
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 3.3e-96 355.9 305 60.0
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 5.7e-96 355.1 301 59.8
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 5.7e-96 355.1 325 57.5
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 5.7e-96 355.1 321 59.5
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 7.4e-96 354.8 301 59.1
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 7.4e-96 354.8 329 55.6
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 2.1e-95 353.2 292 64.0
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 8.2e-95 351.3 324 55.9
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 1.1e-94 350.9 328 56.7
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 1.1e-94 350.9 330 56.4
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 1.8e-94 350.1 329 58.4
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 2.4e-94 349.7 327 57.5
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 3.1e-94 349.4 327 57.5
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 6.9e-94 348.2 258 67.1
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 1.3e-92 344.0 334 55.1
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 2.9e-92 342.8 297 63.3
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 2.9e-92 342.8 297 63.3
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 2.9e-92 342.8 329 57.4
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 2.9e-92 342.8 306 58.8
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 8.4e-92 341.3 262 66.4
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.1e-91 340.9 327 54.4
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.9e-91 340.1 328 55.5
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 2.5e-91 339.7 330 55.2
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 2.5e-91 339.7 330 52.7
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 4.2e-91 339.0 329 54.1
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 5.5e-91 338.6 328 56.4
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.2e-90 337.4 328 55.5
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 4.6e-90 335.5 328 54.9
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 1.0e-89 334.3 327 52.9
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 6.7e-89 331.6 328 52.7
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 2.5e-88 329.7 325 51.7
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.3e-88 329.3 323 52.0
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 5.7e-88 328.6 297 58.6
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 9.7e-88 327.8 323 51.4
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 1.3e-87 327.4 323 51.4
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.3e-87 327.4 325 51.7
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.8e-87 326.2 325 51.7
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.4e-86 323.9 329 53.2
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 1.4e-86 323.9 331 50.5
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 1.8e-86 323.6 274 62.0
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 2.4e-86 323.2 284 58.8
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.2e-85 320.9 330 51.2
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.0e-85 320.1 330 50.9
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 5.9e-85 318.5 330 51.2
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 1.3e-84 317.4 325 53.8
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 1.7e-84 317.0 353 50.1
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.9e-84 316.2 346 48.8
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 3.8e-84 315.8 302 53.0
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 1.1e-83 314.3 330 53.3
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 1.4e-83 313.9 320 51.9
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 9.4e-83 311.2 347 51.6
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 3.6e-82 309.3 273 57.1
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 6.1e-82 308.5 288 54.9
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 7.9e-82 308.1 340 50.3
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 7.9e-82 308.1 327 51.1
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 7.9e-82 308.1 288 52.4
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 1.0e-81 307.8 335 49.6
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 1.4e-81 307.4 293 52.9
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 3.0e-81 306.2 360 50.3
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 6.7e-81 305.1 311 50.2
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 1.3e-79 300.8 327 49.5
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 3.7e-79 299.3 322 49.4
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.4e-78 297.4 334 48.2
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 1.8e-78 297.0 292 50.7
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 4.1e-78 295.8 326 47.9
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 5.3e-78 295.4 327 49.5
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 3.4e-77 292.7 257 58.8
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 5.9e-77 292.0 324 50.0
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 7.7e-77 291.6 334 45.8
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 2.9e-76 289.7 327 45.9
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 8.5e-76 288.1 261 59.4
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 8.5e-76 288.1 329 46.5
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 3.2e-75 286.2 255 54.1
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 3.2e-75 286.2 270 51.9
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 2.7e-74 283.1 304 49.3
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 3.6e-74 282.7 324 46.6
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 3.6e-74 282.7 324 46.9
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 1.0e-73 281.2 294 51.4
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 2.3e-73 280.0 334 45.2
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 6.7e-73 278.5 328 44.8
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 4.4e-72 275.8 285 49.8
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 1.0e-68 264.6 263 49.8
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 7.2e-67 258.5 285 46.7
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 6.1e-66 255.4 156 78.2
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 1.1e-64 251.1 244 53.3
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 6.3e-63 245.4 237 53.2
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 3.6e-58 229.6 158 66.5
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 1.4e-57 227.6 214 53.7
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 8.8e-57 224.9 221 52.0
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 4.4e-56 222.6 153 71.2
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 5.9e-53 212.2 149 71.8
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 1.3e-52 211.1 238 47.5
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 6.5e-52 208.8 231 51.1
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 7.2e-51 205.3 285 44.6
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 2.1e-50 203.8 242 49.6
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 9.1e-46 188.3 246 44.3
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 2.5e-43 180.3 210 49.0
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 7.5e-40 168.7 234 41.0
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 2.7e-37 160.2 258 38.4
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 1.9e-35 154.1 106 73.6
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 4.4e-32 142.9 89 75.3
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 9.2e-30 135.2 83 83.1
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 3.4e-24 116.7 85 69.4
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 1.3e-23 114.8 91 60.4
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 6.4e-23 112.5 76 69.7
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 4.1e-22 109.8 77 64.9
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 1.5e-19 101.3 123 39.0
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 3.3e-11 73.6 56 64.3


User provided reference genes

Program Settings