Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 9.0e-204 713.4 363 100.0
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 1.2e-176 623.2 363 86.0
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 3.6e-176 621.7 363 85.4
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 4.6e-176 621.3 365 84.7
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 3.8e-170 601.7 374 80.5
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 2.5e-169 599.0 374 80.5
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 3.3e-158 562.0 365 78.4
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 1.5e-150 536.6 375 73.1
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 5.7e-150 534.6 375 73.1
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 7.7e-147 524.2 368 73.4
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.0e-143 513.8 359 71.3
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 1.3e-141 506.9 364 70.9
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 4.9e-133 478.4 368 66.3
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 1.7e-130 469.9 378 64.6
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 8.6e-130 467.6 369 64.2
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 2.5e-129 466.1 366 65.3
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 5.8e-126 454.9 371 62.3
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 1.7e-125 453.4 366 63.4
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 2.2e-125 453.0 369 62.3
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 6.4e-125 451.4 378 61.4
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 1.1e-124 450.7 381 60.9
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 5.4e-124 448.4 374 63.1
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 1.6e-123 446.8 370 62.2
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 2.1e-123 446.4 364 64.3
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 2.7e-123 446.0 375 59.7
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 3.5e-123 445.7 370 62.2
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 3.5e-123 445.7 370 61.9
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 1.0e-122 444.1 370 61.1
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 1.0e-122 444.1 371 62.3
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 2.3e-122 443.0 368 60.6
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 5.0e-122 441.8 371 62.5
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 5.0e-122 441.8 369 62.1
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 6.6e-122 441.4 375 59.2
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 8.6e-122 441.0 372 61.8
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 1.1e-121 440.7 377 61.5
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 3.3e-121 439.1 362 61.6
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 2.8e-120 436.0 371 59.8
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 3.6e-120 435.6 370 61.1
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 8.1e-120 434.5 372 61.8
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 1.4e-119 433.7 362 60.5
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 2.3e-119 433.0 373 59.2
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 3.1e-119 432.6 373 60.9
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 4.0e-119 432.2 368 59.5
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 4.0e-119 432.2 354 62.4
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 5.2e-119 431.8 368 61.7
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 8.9e-119 431.0 372 59.7
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 1.2e-118 430.6 373 59.5
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 2.6e-118 429.5 369 60.4
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 4.4e-118 428.7 377 61.3
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 9.9e-118 427.6 370 59.5
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 1.3e-117 427.2 383 60.8
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 3.7e-117 425.6 364 60.2
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 3.7e-117 425.6 370 58.6
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 4.9e-117 425.2 367 58.9
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 6.4e-117 424.9 378 60.8
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 2.4e-116 422.9 371 61.5
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 3.2e-116 422.5 368 58.4
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 4.1e-116 422.2 362 62.4
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 2.1e-115 419.9 375 59.2
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 3.5e-115 419.1 378 58.5
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 5.1e-114 415.2 374 59.4
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 3.3e-113 412.5 372 57.5
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 7.3e-113 411.4 364 58.8
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 9.5e-113 411.0 376 59.3
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 9.5e-113 411.0 364 60.2
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.2e-112 410.6 379 57.5
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.1e-112 409.8 379 57.3
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.4e-111 407.1 379 57.0
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 1.8e-111 406.8 371 58.5
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 2.4e-111 406.4 364 59.3
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 5.8e-110 401.7 366 56.6
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 7.6e-110 401.4 367 56.9
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 7.6e-110 401.4 365 58.1
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 1.3e-109 400.6 376 56.9
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.3e-109 400.6 366 56.3
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 4.9e-109 398.7 366 56.3
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 6.4e-109 398.3 366 56.3
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 6.4e-109 398.3 366 56.3
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 6.4e-109 398.3 373 57.4
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 1.9e-108 396.7 376 55.6
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 5.4e-108 395.2 377 56.0
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 9.2e-108 394.4 376 56.1
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 2.1e-107 393.3 376 54.8
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 2.7e-107 392.9 355 57.2
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 4.6e-107 392.1 377 55.4
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 6.0e-107 391.7 377 54.9
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 3.0e-106 389.4 365 55.3
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 3.9e-106 389.0 373 55.0
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 4.3e-105 385.6 372 54.6
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 4.3e-105 385.6 372 54.6
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 4.3e-105 385.6 363 56.5
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 4.3e-105 385.6 339 58.7
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 5.6e-105 385.2 379 55.7
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 7.3e-105 384.8 339 58.7
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 9.6e-105 384.4 352 56.8
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 1.2e-104 384.0 372 54.3
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 4.7e-104 382.1 354 55.4
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 4.7e-104 382.1 379 55.1
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 6.9e-103 378.3 377 53.1
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 9.0e-103 377.9 376 53.2
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.0e-102 376.7 379 54.9
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.2e-94 350.9 377 49.9
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.1e-92 344.4 363 49.9
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.8e-90 337.0 364 51.6
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 6.9e-87 325.1 461 43.8
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 2.2e-85 320.1 370 48.4
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 1.2e-83 314.3 369 48.0
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 2.7e-83 313.2 373 46.6
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 3.5e-83 312.8 290 54.1
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 6.7e-82 308.5 291 52.9
Solyc02g081230.4 Solanum lycopersicum HOM05D005127 ORTHO05D006022 6.9e-79 298.5 183 79.8
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 6.0e-75 285.4 377 42.7
Oeu045801.1 Olea europaea HOM05D005127 ORTHO05D006022 3.7e-72 276.2 339 44.2
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 6.3e-72 275.4 343 44.3
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 1.1e-71 274.6 351 44.4
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 4.1e-71 272.7 365 42.7
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 3.3e-65 253.1 362 39.2
Pp3c8_14800 Physcomitrium patens HOM05D005127 ORTHO05D006022 1.3e-64 251.1 376 38.3
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 8.2e-64 248.4 220 58.6
AUR62004769 Chenopodium quinoa HOM05D005127 ORTHO05D006022 1.5e-54 217.6 200 56.0
HPP92_020636 Vanilla planifolia HOM05D005127 ORTHO05D006022 7.7e-54 215.3 203 50.7
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis HOM05D005127 ORTHO05D006022 4.1e-47 193.0 252 41.3
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis HOM05D005127 ORTHO05D006022 1.6e-43 181.0 243 40.3
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 4.7e-43 179.5 177 55.9
Lsat_1_v5_gn_2_6720 Lactuca sativa HOM05D005127 ORTHO05D006022 1.7e-40 171.0 164 51.8
Gorai.009G350000 Gossypium raimondii HOM05D000154 ORTHO05D006022 1.6e-38 164.5 132 62.9
Gorai.004G162300 Gossypium raimondii HOM05D005127 ORTHO05D006022 4.5e-38 162.9 132 61.4
CBR_g39794 Chara braunii HOM05D005127 ORTHO05D006022 2.9e-37 160.2 296 31.4
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.0e-34 151.8 132 59.8
Lsat_1_v5_gn_5_127001 Lactuca sativa HOM05D005127 ORTHO05D006022 2.0e-33 147.5 145 50.3
Gorai.011G105200 Gossypium raimondii HOM05D000154 ORTHO05D006022 8.6e-29 132.1 95 66.3
Gohir.D05G325801 Gossypium hirsutum HOM05D000154 ORTHO05D006022 1.5e-28 131.3 95 66.3
Gohir.D08G156000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 5.5e-28 129.4 95 64.2
Gorai.002G056700 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.8e-27 127.1 95 64.2
Medtr5g076940 Medicago truncatula HOM05D005127 ORTHO05D006022 5.7e-25 119.4 107 58.9
Gohir.D04G098033 Gossypium hirsutum HOM05D005127 ORTHO05D006022 7.5e-25 119.0 100 60.0
MCO15G483 Micromonas commoda HOM05D005127 ORTHO05D006022 9.2e-23 112.1 272 28.3
RcHm_v2.0_Chr5g0042551 Rosa chinensis HOM05D005127 ORTHO05D006022 1.9e-20 104.4 113 46.9
Gohir.D02G103100 Gossypium hirsutum HOM05D000154 ORTHO05D006022 6.8e-18 95.9 72 62.5
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 9.8e-17 92.0 239 33.1
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 1.5e-12 78.2 92 53.3
Nn2g14442 Nelumbo nucifera HOM05D005127 ORTHO05D006022 3.3e-12 77.0 45 84.4
GSVIVG01034874001 Vitis vinifera HOM05D005127 ORTHO05D006022 5.6e-12 76.3 65 60.0
GSVIVG01000363001 Vitis vinifera HOM05D005127 ORTHO05D006022 9.5e-12 75.5 65 60.0
GSVIVG01038053001 Vitis vinifera HOM05D005127 ORTHO05D006022 3.6e-11 73.6 59 62.7
A09p28600 Brassica napus HOM05D005127 ORTHO05D006022 2.3e-10 70.9 58 62.1
vmacro09980 Vaccinium macrocarpon HOM05D000060 ORTHO05D003150 4.4e-09 66.6 73 45.2
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 6.4e-08 62.8 43 69.8
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 6.4e-08 62.8 43 69.8
Dinv28241 Davidia involucrata HOM05D005127 ORTHO05D006022 1.4e-07 61.6 108 39.8


User provided reference genes

Program Settings