Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G403.8 Capsicum annuum HOM05D002758 ORTHO05D002885 5.1e-73 277.7 147 100.0
Sopen07g004170 Solanum pennellii HOM05D002758 ORTHO05D002885 9.7e-56 220.3 147 81.6
Solyc07g008280.4 Solanum lycopersicum HOM05D002758 ORTHO05D002885 1.3e-55 219.9 147 82.3
PGSC0003DMG400019894 Solanum tuberosum HOM05D002758 ORTHO05D002885 6.3e-55 217.6 151 79.5
Nitab4.5_0000028g0360 Nicotiana tabacum HOM05D002758 ORTHO05D002885 9.1e-46 187.2 149 77.2
Peaxi162Scf00046g00524 Petunia axillaris HOM05D002758 ORTHO05D002885 1.8e-38 162.9 150 70.0
Nitab4.5_0006661g0030 Nicotiana tabacum HOM05D002758 ORTHO05D002885 9.7e-32 140.6 96 81.2
Hma1.2p1_0018F.1_g012340 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 6.3e-31 137.9 150 58.0
Cc06_g08410 Coffea canephora HOM05D002758 ORTHO05D002885 4.0e-25 118.6 149 55.7
Oeu034104.1 Olea europaea HOM05D002758 ORTHO05D002885 4.0e-25 118.6 151 58.3
Actinidia40476 Actinidia chinensis HOM05D002758 ORTHO05D002885 2.0e-24 116.3 148 52.7
Dinv36518 Davidia involucrata HOM05D002758 ORTHO05D002885 2.6e-24 115.9 150 53.3
Potri.018G131100 Populus trichocarpa HOM05D002758 ORTHO05D002885 2.8e-23 112.5 157 51.0
Rhsim01G0069000 Rhododendron simsii HOM05D002758 ORTHO05D002885 8.3e-23 110.9 149 53.7
vmacro20564 Vaccinium macrocarpon HOM05D002758 ORTHO05D002885 8.3e-23 110.9 141 55.3
Ciclev10009903m.g Citrus clementina HOM05D002758 ORTHO05D002885 4.1e-22 108.6 148 50.7
SalBow1G1971 Salvia bowleyana HOM05D002758 ORTHO05D002885 7.0e-22 107.8 148 53.4
HanXRQChr10g0315561 Helianthus annuus HOM05D002758 ORTHO05D002885 1.6e-21 106.7 148 48.0
Actinidia21981 Actinidia chinensis HOM05D002758 ORTHO05D002885 2.7e-21 105.9 150 51.3
EL10Ac8g18667 Beta vulgaris HOM05D002758 ORTHO05D002885 2.7e-21 105.9 151 47.7
Prupe.7G243900 Prunus persica HOM05D002758 ORTHO05D002885 4.5e-21 105.1 155 49.0
Potri.006G069100 Populus trichocarpa HOM05D002758 ORTHO05D002885 1.0e-20 104.0 157 49.7
MD15G1172200 Malus domestica HOM05D002758 ORTHO05D002885 5.0e-20 101.7 156 48.1
CSS0022572 Camellia sinensis var. sinensis HOM05D002758 ORTHO05D002885 1.1e-19 100.5 153 52.3
ClCG06G011200 Citrullus lanatus HOM05D002758 ORTHO05D002885 1.1e-19 100.5 151 46.4
Manes.06G058000 Manihot esculenta HOM05D002758 ORTHO05D002885 1.1e-19 100.5 153 49.7
Thecc.09G127400 Theobroma cacao HOM05D002758 ORTHO05D002885 1.1e-19 100.5 154 48.7
Duzib187G0530 Durio zibethinus HOM05D002758 ORTHO05D002885 1.9e-19 99.8 151 52.3
HanXRQChr12g0356261 Helianthus annuus HOM05D002758 ORTHO05D002885 1.9e-19 99.8 144 46.5
Hund26508 Selenicereus undatus HOM05D002758 ORTHO05D002885 1.9e-19 99.8 153 47.7
Lsat_1_v5_gn_5_95300 Lactuca sativa HOM05D002758 ORTHO05D002885 2.5e-19 99.4 150 47.3
Ca_21675_v3 Cicer arietinum L. HOM05D002758 ORTHO05D002885 3.3e-19 99.0 164 45.7
Nn2g12045 Nelumbo nucifera HOM05D002758 ORTHO05D002885 1.2e-18 97.1 155 50.3
ECA234G1831 Erigeron canadensis HOM05D002758 ORTHO05D002885 2.8e-18 95.9 145 46.9
Gohir.A05G016000 Gossypium hirsutum HOM05D002758 ORTHO05D002885 3.6e-18 95.5 149 47.7
Gohir.D05G017100 Gossypium hirsutum HOM05D002758 ORTHO05D002885 3.6e-18 95.5 149 47.7
Gorai.009G017300 Gossypium raimondii HOM05D002758 ORTHO05D002885 3.6e-18 95.5 149 47.7
Oeu058050.1 Olea europaea HOM05D002758 ORTHO05D002885 3.6e-18 95.5 150 52.0
Duzib150G0461 Durio zibethinus HOM05D002758 ORTHO05D002885 8.0e-18 94.4 149 49.7
Sabra06G0051500 Salix brachista HOM05D002758 ORTHO05D002885 8.0e-18 94.4 155 48.4
GSVIVG01015544001 Vitis vinifera HOM05D002758 ORTHO05D002885 8.0e-18 94.4 158 46.8
Medtr4g114600 Medicago truncatula HOM05D002758 ORTHO05D002885 1.0e-17 94.0 153 47.7
ECA240G3055 Erigeron canadensis HOM05D002758 ORTHO05D002885 1.4e-17 93.6 138 48.6
Lsat_1_v5_gn_7_45161 Lactuca sativa HOM05D002758 ORTHO05D002885 1.4e-17 93.6 152 46.7
Nn8g39466 Nelumbo nucifera HOM05D002758 ORTHO05D002885 1.4e-17 93.6 152 47.4
DCAR_014886 Daucus carota HOM05D002758 ORTHO05D002885 1.8e-17 93.2 142 49.3
Psat4g039800 Pisum sativum HOM05D002758 ORTHO05D002885 1.8e-17 93.2 151 47.7
arahy.Tifrunner.gnm1.ann1.75SBZZ Arachis hypogaea HOM05D002758 ORTHO05D002885 2.3e-17 92.8 153 49.0
AUR62011138 Chenopodium quinoa HOM05D002758 ORTHO05D002885 2.3e-17 92.8 144 48.6
MD02G1030600 Malus domestica HOM05D002758 ORTHO05D002885 2.3e-17 92.8 155 45.2
arahy.Tifrunner.gnm1.ann1.4I3R3X Arachis hypogaea HOM05D002758 ORTHO05D002885 3.0e-17 92.4 153 49.0
Aqoxy7G03691 Aquilegia oxysepala HOM05D002758 ORTHO05D002885 5.2e-17 91.7 155 49.7
Gohir.A07G036200 Gossypium hirsutum HOM05D002758 ORTHO05D002885 5.2e-17 91.7 147 49.7
CANSAT11G2365 Cannabis sativa HOM05D002758 ORTHO05D002885 6.8e-17 91.3 155 46.5
Gorai.001G042500 Gossypium raimondii HOM05D002758 ORTHO05D002885 6.8e-17 91.3 150 47.3
GSVIVG01017318001 Vitis vinifera HOM05D002758 ORTHO05D002885 6.8e-17 91.3 153 46.4
Glyma.04G147200 Glycine max HOM05D002758 ORTHO05D002885 8.9e-17 90.9 153 49.0
HanXRQChr04g0096561 Helianthus annuus HOM05D002758 ORTHO05D002885 8.9e-17 90.9 153 43.8
Duzib168G0478 Durio zibethinus HOM05D002758 ORTHO05D002885 1.2e-16 90.5 152 46.7
FAN23G2585 Fragaria x ananassa HOM05D002758 ORTHO05D002885 1.5e-16 90.1 151 48.3
Eucgr.C01181 Eucalyptus grandis HOM05D002758 ORTHO05D002885 2.0e-16 89.7 151 45.7
FAN19G2709 Fragaria x ananassa HOM05D002758 ORTHO05D002885 2.0e-16 89.7 151 47.7
Sed0027515 Sechium edule HOM05D002758 ORTHO05D002885 2.6e-16 89.4 146 43.2
TWI32G0299 Tripterygium wilfordii HOM05D002758 ORTHO05D002885 2.6e-16 89.4 147 49.7
Nitab4.5_0005728g0010 Nicotiana tabacum HOM05D002758 ORTHO05D002885 3.4e-16 89.0 157 44.6
QL02p088621 Quercus lobata HOM05D002758 ORTHO05D002885 3.4e-16 89.0 152 42.8
Actinidia01753 Actinidia chinensis HOM05D002758 ORTHO05D002885 4.4e-16 88.6 151 42.4
TAR626G0616 Trochodendron aralioides HOM05D002758 ORTHO05D002885 4.4e-16 88.6 144 47.9
VMungo1215G1272 Vigna mungo HOM05D002758 ORTHO05D002885 4.4e-16 88.6 152 48.7
Nitab4.5_0001764g0140 Nicotiana tabacum HOM05D002758 ORTHO05D002885 5.7e-16 88.2 148 45.3
Actinidia15774 Actinidia chinensis HOM05D002758 ORTHO05D002885 7.5e-16 87.8 145 45.5
MSTRG.10674 Avicennia marina HOM05D002758 ORTHO05D002885 7.5e-16 87.8 152 44.7
FvH4_1g03160 Fragaria vesca HOM05D002758 ORTHO05D002885 7.5e-16 87.8 151 48.3
FAN26G2290 Fragaria x ananassa HOM05D002758 ORTHO05D002885 7.5e-16 87.8 151 47.7
RcHm_v2.0_Chr2g0088291 Rosa chinensis HOM05D002758 ORTHO05D002885 7.5e-16 87.8 151 47.0
MELO3C010338.2 Cucumis melo HOM05D002758 ORTHO05D002885 9.8e-16 87.4 152 40.8
Phvul.003G165200 Phaseolus vulgaris HOM05D002758 ORTHO05D002885 1.7e-15 86.7 152 48.0
Haze_25567 Corylus avellana HOM05D002758 ORTHO05D002885 2.2e-15 86.3 157 43.9
Migut.I00776 Erythranthe guttata HOM05D002758 ORTHO05D002885 2.8e-15 85.9 154 45.5
Lalb_Chr13g0301821 Lupinus albus HOM05D002758 ORTHO05D002885 2.8e-15 85.9 151 44.4
FAN28G2446 Fragaria x ananassa HOM05D000315 ORTHO05D001379 3.7e-15 85.5 151 49.0
Hund09249 Selenicereus undatus HOM05D002758 ORTHO05D002885 3.7e-15 85.5 165 40.6
CsaV3_1G030210 Cucumis sativus L. HOM05D002758 ORTHO05D002885 6.3e-15 84.7 152 39.5
HanXRQChr09g0241961 Helianthus annuus HOM05D002758 ORTHO05D002885 6.3e-15 84.7 152 42.8
TPR.G26478 Trifolium pratense HOM05D002758 ORTHO05D002885 6.3e-15 84.7 162 46.3
CiPaw.03G244800 Carya illinoinensis HOM05D002758 ORTHO05D002885 1.1e-14 84.0 160 43.1
Glyma.17G114300 Glycine max HOM05D002758 ORTHO05D002885 1.1e-14 84.0 154 46.1
Sed0025517 Sechium edule HOM05D002758 ORTHO05D002885 1.1e-14 84.0 155 42.6
Peaxi162Scf00332g00756 Petunia axillaris HOM05D002758 ORTHO05D002885 1.4e-14 83.6 151 44.4
Lj4g0007884 Lotus japonicus HOM05D002758 ORTHO05D002885 2.4e-14 82.8 153 44.4
PGR142G4319 Punica granatum HOM05D002758 ORTHO05D002885 2.4e-14 82.8 181 43.1
Gohir.D07G040200 Gossypium hirsutum HOM05D002758 ORTHO05D002885 5.4e-14 81.6 149 43.6
CiPaw.04G171600 Carya illinoinensis HOM05D002758 ORTHO05D002885 7.0e-14 81.3 149 43.6
Manes.14G132900 Manihot esculenta HOM05D002758 ORTHO05D002885 7.0e-14 81.3 146 45.9
PSO210G4958 Papaver somniferum HOM05D002758 ORTHO05D002885 9.2e-14 80.9 153 43.8
Migut.K00449 Erythranthe guttata HOM05D002758 ORTHO05D002885 1.2e-13 80.5 157 44.6
PSO210G1692 Papaver somniferum HOM05D002758 ORTHO05D002885 1.2e-13 80.5 153 43.8
Duzib235G1225 Durio zibethinus HOM05D002758 ORTHO05D002885 1.6e-13 80.1 147 43.5
HanXRQChr05g0138371 Helianthus annuus HOM05D002758 ORTHO05D002885 1.6e-13 80.1 153 42.5
HanXRQChr05g0140201 Helianthus annuus HOM05D002758 ORTHO05D002885 1.6e-13 80.1 153 42.5
Cfa003385 Carpinus fangiana HOM05D002758 ORTHO05D002885 2.0e-13 79.7 153 41.8
Lsat_1_v5_gn_8_58521 Lactuca sativa HOM05D002758 ORTHO05D002885 2.0e-13 79.7 152 42.1
CSS0041896 Camellia sinensis var. sinensis HOM05D002758 ORTHO05D002885 3.5e-13 79.0 151 43.0
Lalb_Chr07g0178991 Lupinus albus HOM05D002758 ORTHO05D002885 3.5e-13 79.0 151 42.4
DCAR_017810 Daucus carota HOM05D002758 ORTHO05D002885 5.9e-13 78.2 138 43.5
Gohir.A10G074300 Gossypium hirsutum HOM05D002758 ORTHO05D002885 5.9e-13 78.2 150 42.0
Sopen03g035550 Solanum pennellii HOM05D002758 ORTHO05D002885 5.9e-13 78.2 154 41.6
DCAR_020919 Daucus carota HOM05D002758 ORTHO05D002885 1.0e-12 77.4 147 44.9
Sc18g0000570 Simmondsia chinensis HOM05D002758 ORTHO05D002885 1.3e-12 77.0 157 42.7
Dinv30594 Davidia involucrata HOM05D002758 ORTHO05D002885 1.7e-12 76.6 143 42.0
PGSC0003DMG400000615 Solanum tuberosum HOM05D002758 ORTHO05D002885 1.7e-12 76.6 151 41.1
Manes.04G113800 Manihot esculenta HOM05D002758 ORTHO05D002885 2.3e-12 76.3 151 43.7
Thecc.06G021700 Theobroma cacao HOM05D002758 ORTHO05D002885 5.0e-12 75.1 147 39.5
TWI18G1221 Tripterygium wilfordii HOM05D002758 ORTHO05D002885 5.0e-12 75.1 154 41.6
TAR383G0328 Trochodendron aralioides HOM05D002758 ORTHO05D002885 5.0e-12 75.1 137 41.6
MSTRG.11135 Avicennia marina HOM05D002758 ORTHO05D002885 1.9e-11 73.2 159 40.3
Cpa.g.sc46.5 Carica papaya HOM05D002758 ORTHO05D002885 1.9e-11 73.2 182 41.8
Gohir.A05G125833 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.9e-11 73.2 149 40.3
Gohir.A05G125900 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.9e-11 73.2 149 40.3
Atru.chr1.2990 Acer truncatum HOM05D002758 ORTHO05D002885 2.5e-11 72.8 149 41.6
Cc04_g04270 Coffea canephora HOM05D002758 ORTHO05D002885 2.5e-11 72.8 155 41.3
Solyc03g116630.3 Solanum lycopersicum HOM05D002758 ORTHO05D002885 2.5e-11 72.8 160 38.8
vmacro18989 Vaccinium macrocarpon HOM05D002758 ORTHO05D002885 3.3e-11 72.4 153 39.9
Gohir.D05G126800 Gossypium hirsutum HOM05D002758 ORTHO05D002885 5.6e-11 71.6 149 39.6
Glyma.13G166500 Glycine max HOM05D002758 ORTHO05D002885 7.3e-11 71.2 154 43.5
Gohir.D10G077100 Gossypium hirsutum HOM05D002758 ORTHO05D002885 7.3e-11 71.2 152 39.5
COL.COLO4_12950 Corchorus olitorius HOM05D002758 ORTHO05D002885 9.5e-11 70.9 147 38.8
THA.LOC104808985 Tarenaya hassleriana HOM05D002758 ORTHO05D002885 9.5e-11 70.9 148 38.5
TWI63G1461 Tripterygium wilfordii HOM05D002758 ORTHO05D002885 1.6e-10 70.1 145 43.4
Hma1.2p1_1962F.1_g309250 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 2.1e-10 69.7 144 41.7
BcaC08g44003 Brassica carinata HOM05D002758 ORTHO05D002885 6.1e-10 68.2 150 42.0
Ciclev10026775m.g Citrus clementina HOM05D002758 ORTHO05D002885 8.0e-10 67.8 142 38.7
Oeu027807.1 Olea europaea HOM05D002758 ORTHO05D002885 8.0e-10 67.8 150 41.3
FAN02G3379 Fragaria x ananassa HOM05D002758 ORTHO05D002885 1.0e-09 67.4 147 36.7
Gorai.011G083300 Gossypium raimondii HOM05D002758 ORTHO05D002885 1.0e-09 67.4 152 38.8
QL05p029455 Quercus lobata HOM05D002758 ORTHO05D002885 1.0e-09 67.4 142 39.4
CiPaw.01G246400 Carya illinoinensis HOM05D002758 ORTHO05D002885 1.4e-09 67.0 154 40.3
Duzib160G0702 Durio zibethinus HOM05D002758 ORTHO05D002885 1.4e-09 67.0 147 38.8
Gorai.009G130900 Gossypium raimondii HOM05D002758 ORTHO05D002885 1.4e-09 67.0 149 38.3
ClCG07G012650 Citrullus lanatus HOM05D002758 ORTHO05D002885 1.8e-09 66.6 141 38.3
FAN14G2484 Fragaria x ananassa HOM05D002758 ORTHO05D002885 1.8e-09 66.6 147 36.1
Sc10g0005850 Simmondsia chinensis HOM05D002758 ORTHO05D002885 1.8e-09 66.6 150 39.3
Cpa.g.sc10.256 Carica papaya HOM05D002758 ORTHO05D002885 2.3e-09 66.2 153 37.3
A05p18910 Brassica napus HOM05D002758 ORTHO05D002885 4.0e-09 65.5 148 42.6
FAN05G1526 Fragaria x ananassa HOM05D002758 ORTHO05D002885 4.0e-09 65.5 138 36.2
Prupe.3G084900 Prunus persica HOM05D002758 ORTHO05D002885 5.2e-09 65.1 147 39.5
FvH4_6g29910 Fragaria vesca HOM05D002758 ORTHO05D002885 6.8e-09 64.7 147 35.4
COL.COLO4_35114 Corchorus olitorius HOM05D002758 ORTHO05D002885 8.9e-09 64.3 145 40.7
Potri.001G192800 Populus trichocarpa HOM05D002758 ORTHO05D002885 1.2e-08 63.9 147 42.2
Sc08g0006550 Simmondsia chinensis HOM05D002758 ORTHO05D002885 1.5e-08 63.5 148 41.9
BcaC08g43429 Brassica carinata HOM05D002758 ORTHO05D002885 2.6e-08 62.8 145 40.0
BolC6t35882H Brassica oleracea HOM05D002758 ORTHO05D002885 4.4e-08 62.0 145 40.0
CANSAT56G1388 Cannabis sativa HOM05D002758 ORTHO05D002885 5.8e-08 61.6 157 38.9
CARHR042690 Cardamine hirsuta HOM05D002758 ORTHO05D002885 5.8e-08 61.6 155 39.4
MD17G1209300 Malus domestica HOM05D002758 ORTHO05D002885 5.8e-08 61.6 141 34.8
Sabra18G0111200 Salix brachista HOM05D002758 ORTHO05D005776 5.8e-08 61.6 145 40.0
Sed0015979 Sechium edule HOM05D002758 ORTHO05D002885 7.5e-08 61.2 140 38.6
SGA_v2.0_scaffold37G14775 Striga asiatica HOM05D002758 ORTHO05D002885 7.5e-08 61.2 163 36.2
CDE04G0331 Ceratophyllum demersum HOM05D002758 ORTHO05D002885 1.3e-07 60.5 141 37.6
Glyma.08G211800 Glycine max HOM05D002758 ORTHO05D002885 1.3e-07 60.5 142 43.0
Nitab4.5_0000373g0020 Nicotiana tabacum HOM05D002758 ORTHO05D002885 1.3e-07 60.5 151 39.7
Manes.11G055700 Manihot esculenta HOM05D002758 ORTHO05D002885 1.7e-07 60.1 149 36.2
Aa31LG10G2440 Aethionema arabicum HOM05D002758 ORTHO05D002885 2.9e-07 59.3 173 37.0
BcaC08g43430 Brassica carinata HOM05D002758 ORTHO05D002885 2.9e-07 59.3 139 36.7
Oeu045136.1 Olea europaea HOM05D002758 ORTHO05D002885 2.9e-07 59.3 83 45.8
RcHm_v2.0_Chr2g0135861 Rosa chinensis HOM05D002758 ORTHO05D002885 3.7e-07 58.9 150 36.7
Hund00526 Selenicereus undatus HOM05D002758 ORTHO05D002885 3.7e-07 58.9 162 37.7
SGA_v2.0_scaffold5G02683 Striga asiatica HOM05D002758 ORTHO05D002885 4.9e-07 58.5 156 36.5
Aqoxy7G02215 Aquilegia oxysepala HOM05D002758 ORTHO05D002885 6.4e-07 58.2 145 35.9
C06p14110 Brassica napus HOM05D002758 ORTHO05D002885 1.9e-06 56.6 151 38.4
BolC6t36589H Brassica oleracea HOM05D002758 ORTHO05D002885 1.9e-06 56.6 151 38.4
AT3G15760 Arabidopsis thaliana HOM05D002758 ORTHO05D002885 2.4e-06 56.2 141 36.2
THA.LOC104815531 Tarenaya hassleriana HOM05D002758 ORTHO05D002885 2.4e-06 56.2 155 38.7
Glyma.07G031000 Glycine max HOM05D002758 ORTHO05D002885 3.2e-06 55.8 146 36.3
Atru.chr7.1142 Acer truncatum HOM05D002758 ORTHO05D002885 4.1e-06 55.5 94 48.9
BraA05t20788Z Brassica rapa HOM05D002758 ORTHO05D002885 7.0e-06 54.7 139 39.6
Eucgr.C04223 Eucalyptus grandis HOM05D002758 ORTHO05D002885 7.0e-06 54.7 159 37.7
CANSAT78G2290 Cannabis sativa HOM05D002758 ORTHO05D002885 9.2e-06 54.3 102 44.1
Nn2g14410 Nelumbo nucifera HOM05D005113 ORTHO05D006045 9.2e-06 54.3 147 33.3
Sed0016169 Sechium edule HOM05D002758 ORTHO05D002885 9.2e-06 54.3 159 37.1


User provided reference genes

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