Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G403.1 Capsicum annuum HOM05D005890 ORTHO05D006717 1.1e-195 686.8 423 100.0
PGSC0003DMG400019897 Solanum tuberosum HOM05D005890 ORTHO05D006717 1.0e-129 467.6 434 70.3
Sopen07g004220 Solanum pennellii HOM05D005890 ORTHO05D006717 2.9e-121 439.5 431 68.7
Solyc07g008330.3 Solanum lycopersicum HOM05D005890 ORTHO05D006717 1.3e-116 424.1 374 73.8
Peaxi162Scf00046g00417 Petunia axillaris HOM05D005890 ORTHO05D006717 3.0e-110 402.9 425 64.0
Nitab4.5_0000028g0410 Nicotiana tabacum HOM05D005890 ORTHO05D006717 1.4e-107 394.0 435 60.9
Nitab4.5_0004916g0020 Nicotiana tabacum HOM05D005890 ORTHO05D006717 7.7e-106 388.3 430 63.7
Cc03_g15250 Coffea canephora HOM05D005890 ORTHO05D006717 1.2e-63 248.1 487 37.0
Migut.L01872 Erythranthe guttata HOM05D005890 ORTHO05D006717 6.9e-54 215.7 413 38.0
DCAR_018014 Daucus carota HOM05D005890 ORTHO05D006717 3.2e-51 206.8 431 41.1
CSS0049336 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 5.4e-51 206.1 192 59.4
CANSAT01G0113 Cannabis sativa HOM05D005890 ORTHO05D006717 1.6e-50 204.5 378 42.6
Dinv41195 Davidia involucrata HOM05D005890 ORTHO05D006717 2.7e-50 203.8 549 32.6
Dinv25461 Davidia involucrata HOM05D005890 ORTHO05D006717 3.5e-50 203.4 535 34.2
MELO3C006422.2 Cucumis melo HOM05D005890 ORTHO05D006717 3.0e-49 200.3 398 39.4
Eucgr.C02214 Eucalyptus grandis HOM05D005890 ORTHO05D006717 6.6e-49 199.1 500 34.4
FAN07G1770 Fragaria x ananassa HOM05D005890 ORTHO05D006717 6.6e-49 199.1 406 40.9
FAN17G2561 Fragaria x ananassa HOM05D005890 ORTHO05D006717 1.9e-48 197.6 402 39.3
Ciclev10008727m.g Citrus clementina HOM05D005890 ORTHO05D006717 9.6e-48 195.3 174 63.2
ClCG06G013720 Citrullus lanatus HOM05D005890 ORTHO05D006717 1.6e-47 194.5 397 36.5
Rhsim01G0114500 Rhododendron simsii HOM05D005890 ORTHO05D006717 1.6e-47 194.5 543 32.4
HanXRQChr03g0065401 Helianthus annuus HOM05D005890 ORTHO05D006717 2.1e-47 194.1 424 40.8
Oeu063100.1 Olea europaea HOM05D005890 ORTHO05D006717 2.8e-47 193.7 174 62.6
CsaV3_3G012070 Cucumis sativus L. HOM05D005890 ORTHO05D006717 4.8e-47 193.0 392 38.0
FAN12G2329 Fragaria x ananassa HOM05D005890 ORTHO05D006717 8.1e-47 192.2 403 38.5
HanXRQChr10g0308981 Helianthus annuus HOM05D005890 ORTHO05D006717 2.4e-46 190.7 367 46.3
QL07p048247 Quercus lobata HOM05D005890 ORTHO05D006717 2.4e-46 190.7 450 35.1
Hma1.2p1_0235F.1_g098760 Hydrangea macrophylla HOM05D005890 ORTHO05D006717 4.0e-46 189.9 503 34.6
SGA_v2.0_scaffold392G50652 Striga asiatica HOM05D005890 ORTHO05D006717 1.2e-45 188.3 186 59.7
CiPaw.07G198700 Carya illinoinensis HOM05D005890 ORTHO05D006717 1.5e-45 188.0 429 35.9
Sed0014693 Sechium edule HOM05D005890 ORTHO05D006717 3.4e-45 186.8 439 36.2
MD16G1246300 Malus domestica HOM05D005890 ORTHO05D006717 5.8e-45 186.0 447 34.9
SGA_v2.0_scaffold41G15805 Striga asiatica HOM05D005890 ORTHO05D006717 9.9e-45 185.3 487 34.5
Atru.chr7.926 Acer truncatum HOM05D005890 ORTHO05D006717 1.3e-44 184.9 171 60.8
MSTRG.26556 Avicennia marina HOM05D005890 ORTHO05D006717 2.9e-44 183.7 427 36.1
Prupe.1G073000 Prunus persica HOM05D005890 ORTHO05D006717 2.9e-44 183.7 439 37.8
GSVIVG01029286001 Vitis vinifera HOM05D005890 ORTHO05D006717 2.9e-44 183.7 447 35.6
VMungo1215G0729 Vigna mungo HOM05D005890 ORTHO05D006717 8.4e-44 182.2 371 39.9
Manes.06G017800 Manihot esculenta HOM05D005890 ORTHO05D006717 1.9e-43 181.0 475 34.5
Atru.BG.17.p Acer truncatum HOM05D005890 ORTHO05D006717 4.2e-43 179.9 368 38.6
Glyma.17G058000 Glycine max HOM05D005890 ORTHO05D006717 9.3e-43 178.7 369 36.0
arahy.Tifrunner.gnm1.ann1.CB00ZF Arachis hypogaea HOM05D005890 ORTHO05D006717 2.1e-42 177.6 418 38.0
Potri.018G140200 Populus trichocarpa HOM05D005890 ORTHO05D006717 3.5e-42 176.8 309 39.8
Aqoxy7G02888 Aquilegia oxysepala HOM05D005890 ORTHO05D006717 4.6e-42 176.4 210 53.8
Medtr4g127160 Medicago truncatula HOM05D005890 ORTHO05D006717 4.6e-42 176.4 441 37.4
Cfa013466 Carpinus fangiana HOM05D005890 ORTHO05D006717 6.0e-42 176.0 509 34.2
arahy.Tifrunner.gnm1.ann1.V3N0NP Arachis hypogaea HOM05D005890 ORTHO05D006717 1.8e-41 174.5 423 38.8
RcHm_v2.0_Chr4g0398981 Rosa chinensis HOM05D005890 ORTHO05D006717 1.8e-41 174.5 410 38.0
Sabra06G0054500 Salix brachista HOM05D005890 ORTHO05D006717 1.8e-41 174.5 170 58.8
AUR62027422 Chenopodium quinoa HOM05D005890 ORTHO05D006717 2.3e-41 174.1 385 41.0
ATR1098G092 Amborella trichopoda HOM05D005890 ORTHO05D006717 3.0e-41 173.7 197 53.3
ECA234G0353 Erigeron canadensis HOM05D005890 ORTHO05D006717 3.9e-41 173.3 382 42.1
Nn8g40670 Nelumbo nucifera HOM05D005890 ORTHO05D006717 5.1e-41 172.9 317 38.2
Glyma.13G101600 Glycine max HOM05D005890 ORTHO05D006717 8.7e-41 172.2 373 38.1
Sed0024384 Sechium edule HOM05D005890 ORTHO05D006717 1.1e-40 171.8 405 35.6
Actinidia02494 Actinidia chinensis HOM05D005890 ORTHO05D006717 1.9e-40 171.0 515 32.2
unitig_8.g3553 Utricularia gibba HOM05D005890 ORTHO05D006717 7.4e-40 169.1 381 36.2
Lalb_Chr13g0299851 Lupinus albus HOM05D005890 ORTHO05D006717 9.6e-40 168.7 373 36.5
ECA240G0208 Erigeron canadensis HOM05D005890 ORTHO05D006717 1.3e-39 168.3 497 33.4
PGR044G2166 Punica granatum HOM05D005890 ORTHO05D006717 6.2e-39 166.0 476 33.8
AUR62031274 Chenopodium quinoa HOM05D005890 ORTHO05D006717 8.1e-39 165.6 361 36.6
Potri.006G073100 Populus trichocarpa HOM05D005890 ORTHO05D006717 3.1e-38 163.7 124 70.2
Lsat_1_v5_gn_7_55781 Lactuca sativa HOM05D005890 ORTHO05D006717 5.3e-38 162.9 442 34.2
Phvul.003G140452 Phaseolus vulgaris HOM05D005890 ORTHO05D006717 1.2e-37 161.8 396 35.9
EL10Ac8g19296 Beta vulgaris HOM05D005890 ORTHO05D006717 2.0e-37 161.0 408 36.3
Lj4g0027857 Lotus japonicus HOM05D005890 ORTHO05D006717 2.0e-37 161.0 384 39.3
TAR637G0001 Trochodendron aralioides HOM05D005890 ORTHO05D006717 2.0e-37 161.0 95 83.2
PSO170G0082 Papaver somniferum HOM05D005890 ORTHO05D006717 2.6e-37 160.6 119 68.1
Lsat_1_v5_gn_5_83860 Lactuca sativa HOM05D005890 ORTHO05D006717 4.5e-37 159.8 366 36.1
Duzib170G1164 Durio zibethinus HOM05D005890 ORTHO05D006717 1.3e-36 158.3 481 34.1
CDE02G0471 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 3.8e-36 156.8 409 35.2
vmacro20806 Vaccinium macrocarpon HOM05D005890 ORTHO05D006717 3.8e-36 156.8 582 29.6
TWI32G1283 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 8.4e-36 155.6 454 32.8
Hund24378 Selenicereus undatus HOM05D005890 ORTHO05D006717 2.5e-35 154.1 409 39.4
Ah.14g085350 Amaranthus hybridus HOM05D005890 ORTHO05D006717 3.2e-35 153.7 438 31.1
Gohir.A05G408300 Gossypium hirsutum HOM05D005890 ORTHO05D006717 2.1e-34 151.0 406 38.7
BcaB08g36002 Brassica carinata HOM05D005890 ORTHO05D006717 2.7e-34 150.6 114 68.4
Thecc.09G191500 Theobroma cacao HOM05D005890 ORTHO05D006717 3.5e-34 150.2 441 37.0
Ca_21262_v3 Cicer arietinum L. HOM05D005890 ORTHO05D006717 7.9e-34 149.1 103 71.8
TWI34G1560 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 1.3e-33 148.3 406 34.2
Aa31LG3G13020 Aethionema arabicum HOM05D005890 ORTHO05D006717 1.8e-33 147.9 372 37.9
Thhalv10013871m.g Eutrema salsugineum HOM05D005890 ORTHO05D006717 3.0e-33 147.1 373 40.2
Gorai.012G008900 Gossypium raimondii HOM05D005890 ORTHO05D006717 3.9e-33 146.7 390 35.6
Os12g0613500 Oryza sativa ssp. japonica HOM05D005890 ORTHO05D006717 5.1e-33 146.4 417 33.3
Sp6g18850 Schrenkiella parvula HOM05D005890 ORTHO05D006717 5.1e-33 146.4 375 36.0
SEGI_20539 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 5.1e-33 146.4 124 62.1
BcaC03g14182 Brassica carinata HOM05D005890 ORTHO05D006717 6.7e-33 146.0 114 67.5
A02p08710 Brassica napus HOM05D005890 ORTHO05D006717 6.7e-33 146.0 119 65.5
C02p14590 Brassica napus HOM05D005890 ORTHO05D006717 6.7e-33 146.0 114 67.5
BolC2t07586H Brassica oleracea HOM05D005890 ORTHO05D006717 6.7e-33 146.0 114 67.5
BraA02t05941Z Brassica rapa HOM05D005890 ORTHO05D006717 6.7e-33 146.0 119 65.5
HPP92_018699 Vanilla planifolia HOM05D005890 ORTHO05D006717 6.7e-33 146.0 457 32.2
MBI14_g15782_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 8.7e-33 145.6 173 49.7
THA.LOC104817770 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 8.7e-33 145.6 430 40.2
PSO063G0609 Papaver somniferum HOM05D005890 ORTHO05D006717 1.1e-32 145.2 392 41.1
Psat4g014480 Pisum sativum HOM05D005890 ORTHO05D006717 1.9e-32 144.4 167 51.5
BcaC04g20011 Brassica carinata HOM05D005890 ORTHO05D006717 4.3e-32 143.3 115 64.3
C09p48820 Brassica napus HOM05D005890 ORTHO05D006717 4.3e-32 143.3 115 64.3
BolC9t57729H Brassica oleracea HOM05D005890 ORTHO05D006717 4.3e-32 143.3 115 64.3
THA.LOC104813501 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 9.6e-32 142.1 390 40.0
CDE05G3513 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 2.8e-31 140.6 382 34.0
MBI18_g10586_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 4.0e-30 136.7 532 31.6
TPR.G5393 Trifolium pratense HOM05D005890 ORTHO05D006717 4.0e-30 136.7 408 36.3
Zm00001eb136110 Zea mays HOM05D005890 ORTHO05D006717 1.2e-29 135.2 293 37.5
CARHR270890 Cardamine hirsuta HOM05D005890 ORTHO05D006717 3.4e-29 133.7 402 38.3
Cpa.g.sc115.65 Carica papaya HOM05D005890 ORTHO05D006717 4.5e-29 133.3 175 46.9
BcaB05g22318 Brassica carinata HOM05D005890 ORTHO05D006717 1.3e-28 131.7 381 32.3
Pp3c3_34440 Physcomitrium patens HOM05D005890 ORTHO05D006717 1.1e-27 128.6 158 49.4
Pp3c3_34441 Physcomitrium patens HOM05D005890 ORTHO05D006717 1.1e-27 128.6 158 49.4
CSS0049604 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 2.5e-27 127.5 199 43.7
AT5G57120 Arabidopsis thaliana HOM05D005890 ORTHO05D006717 5.1e-25 119.8 101 63.4
Mapoly0009s0141 Marchantia polymorpha HOM05D005890 ORTHO05D006717 3.3e-24 117.1 142 45.8
AagrBONN_evm.TU.Sc2ySwM_368.973 Anthoceros agrestis HOM05D005890 ORTHO05D006717 6.3e-23 112.8 178 39.9
Zm00001eb172010 Zea mays HOM05D005890 ORTHO05D006717 1.4e-22 111.7 170 40.6
Haze_22044 Corylus avellana HOM05D005890 ORTHO05D006717 1.8e-22 111.3 133 51.1
AL8G33040 Arabidopsis lyrata HOM05D005890 ORTHO05D006717 2.4e-22 110.9 101 63.4
Carub.0008s1762 Capsella rubella HOM05D005890 ORTHO05D006717 2.4e-22 110.9 97 61.9
CBR_g20282 Chara braunii HOM05D000019 ORTHO05D000002 3.1e-22 110.5 121 50.4
SEGI_22268 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 3.8e-20 103.6 62 77.4
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 6.5e-20 102.8 134 48.5
COL.COLO4_08570 Corchorus olitorius HOM05D005890 ORTHO05D006717 1.0e-17 95.5 531 26.4
FvH4_4g06950 Fragaria vesca HOM05D005890 ORTHO05D006717 1.5e-16 91.7 347 30.5
MD13G1240600 Malus domestica HOM05D005890 ORTHO05D006717 1.3e-12 78.6 431 26.5
Cre01.g055400 Chlamydomonas reinhardtii HOM05D005890 ORTHO05D006717 2.2e-12 77.8 93 54.8
DCAR_029041 Daucus carota HOM05D005890 ORTHO05D006717 2.9e-12 77.4 134 40.3
Zm00001eb394450 Zea mays HOM05D014690 ORTHO05D006717 9.4e-11 72.4 55 61.8
MCO09G065 Micromonas commoda HOM05D005890 ORTHO05D006717 6.1e-10 69.7 80 55.0
Sabra18G0114500 Salix brachista HOM05D005890 ORTHO05D006717 3.3e-08 63.9 249 30.1
A10p14440 Brassica napus HOM05D005890 ORTHO05D006717 4.4e-08 63.5 34 85.3
BraA10t43535Z Brassica rapa HOM05D005890 ORTHO05D006717 4.4e-08 63.5 34 85.3
DCAR_001127 Daucus carota HOM05D000703 ORTHO05D006717 6.3e-07 59.7 32 81.2
Gohir.D04G007200 Gossypium hirsutum HOM05D005890 ORTHO05D006717 5.3e-06 56.6 316 29.7


User provided reference genes

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