Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G401.3 Capsicum annuum HOM05D005792 ORTHO05D007171 9.5e-178 626.7 310 100.0
Solyc12g094450.3 Solanum lycopersicum HOM05D005792 ORTHO05D007171 1.3e-158 563.1 311 86.8
Sopen12g031340 Solanum pennellii HOM05D005792 ORTHO05D007171 1.1e-157 560.1 311 86.5
PGSC0003DMG400029326 Solanum tuberosum HOM05D005792 ORTHO05D007171 3.9e-155 551.6 340 80.3
Nitab4.5_0000498g0200 Nicotiana tabacum HOM05D005792 ORTHO05D007171 1.6e-153 546.2 311 85.2
Nitab4.5_0002353g0010 Nicotiana tabacum HOM05D005792 ORTHO05D007171 4.7e-153 544.7 309 84.8
Peaxi162Scf00064g00910 Petunia axillaris HOM05D005792 ORTHO05D007171 8.3e-150 533.9 311 84.6
Dinv39569 Davidia involucrata HOM05D005792 ORTHO05D007171 1.9e-138 496.1 308 77.9
Migut.C00916 Erythranthe guttata HOM05D005792 ORTHO05D007171 5.8e-135 484.6 308 76.0
CSS0018708 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 9.3e-133 477.2 306 73.9
Potri.005G247600 Populus trichocarpa HOM05D005792 ORTHO05D007171 1.0e-131 473.8 307 74.3
CSS0016825 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 6.6e-131 471.1 311 72.7
CSS0011850 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 8.7e-131 470.7 306 72.9
Cc10_g00990 Coffea canephora HOM05D005792 ORTHO05D007171 8.7e-131 470.7 317 72.6
CiPaw.08G070700 Carya illinoinensis HOM05D005792 ORTHO05D007171 1.9e-130 469.5 306 73.5
Lj4C15T2 Lonicera japonica HOM05D005792 ORTHO05D007171 3.6e-129 465.3 306 74.5
CiPaw.08G070500 Carya illinoinensis HOM05D005792 ORTHO05D007171 8.1e-129 464.2 306 72.5
HanXRQChr14g0429001 Helianthus annuus HOM05D005792 ORTHO05D007171 8.1e-129 464.2 306 72.2
Psat5g010960 Pisum sativum HOM05D005792 ORTHO05D007171 1.1e-128 463.8 308 73.1
SalBow7G0964 Salvia bowleyana HOM05D005792 ORTHO05D007171 4.0e-128 461.8 295 73.9
ECA238G1749 Erigeron canadensis HOM05D005792 ORTHO05D007171 3.4e-127 458.8 305 71.1
Atru.chr13.181 Acer truncatum HOM05D005792 ORTHO05D007171 7.6e-127 457.6 309 72.2
Hma1.2p1_1260F.1_g270990 Hydrangea macrophylla HOM05D005792 ORTHO05D007171 7.6e-127 457.6 306 73.9
Manes.18G007700 Manihot esculenta HOM05D005792 ORTHO05D007171 1.3e-126 456.8 305 73.1
GSVIVG01008709001 Vitis vinifera HOM05D005792 ORTHO05D007171 1.3e-126 456.8 304 71.1
TWI36G1625 Tripterygium wilfordii HOM05D005792 ORTHO05D007171 2.9e-126 455.7 306 71.2
Thecc.08G054700 Theobroma cacao HOM05D005792 ORTHO05D007171 8.4e-126 454.1 306 71.9
Hund05134 Selenicereus undatus HOM05D005792 ORTHO05D007171 1.4e-125 453.4 312 70.5
Aqoxy6G01867 Aquilegia oxysepala HOM05D005792 ORTHO05D007171 5.4e-125 451.4 306 69.6
vmacro21840 Vaccinium macrocarpon HOM05D005792 ORTHO05D007171 7.1e-125 451.1 336 66.4
Nn5g30890 Nelumbo nucifera HOM05D005792 ORTHO05D007171 1.6e-124 449.9 307 70.0
Eucgr.F01710 Eucalyptus grandis HOM05D005792 ORTHO05D007171 2.1e-124 449.5 311 69.8
Gohir.D05G256800 Gossypium hirsutum HOM05D005792 ORTHO05D007171 2.7e-124 449.1 306 70.9
Gorai.009G268300 Gossypium raimondii HOM05D005792 ORTHO05D007171 3.5e-124 448.7 306 70.9
Prupe.1G357300 Prunus persica HOM05D005792 ORTHO05D007171 3.5e-124 448.7 308 70.5
MD08G1005200 Malus domestica HOM05D005792 ORTHO05D007171 4.6e-124 448.4 305 71.8
Duzib093G0813 Durio zibethinus HOM05D005792 ORTHO05D007171 6.0e-124 448.0 306 70.3
EL10Ac1g02028 Beta vulgaris HOM05D005792 ORTHO05D007171 7.9e-124 447.6 302 70.2
Ca_15448_v3 Cicer arietinum L. HOM05D005792 ORTHO05D007171 1.0e-123 447.2 306 70.9
Medtr3g115040 Medicago truncatula HOM05D005792 ORTHO05D007171 1.0e-123 447.2 308 70.8
VMungo1309G0997 Vigna mungo HOM05D005792 ORTHO05D007171 1.0e-123 447.2 305 71.5
unitig_747.g21523 Utricularia gibba HOM05D005792 ORTHO05D007171 1.8e-123 446.4 303 70.0
CANSAT51G0003 Cannabis sativa HOM05D005792 ORTHO05D007171 2.3e-123 446.0 303 72.6
PGR083G0297 Punica granatum HOM05D005792 ORTHO05D007171 2.3e-123 446.0 306 69.6
THA.LOC104813765 Tarenaya hassleriana HOM05D005792 ORTHO05D007171 2.3e-123 446.0 306 70.6
QL02p013536 Quercus lobata HOM05D005792 ORTHO05D007171 3.9e-123 445.3 312 69.2
FvH4_2g37800 Fragaria vesca HOM05D005792 ORTHO05D007171 8.7e-123 444.1 303 71.0
Lj1g0011663 Lotus japonicus HOM05D005792 ORTHO05D007171 1.9e-122 443.0 303 71.3
Sc26g0004560 Simmondsia chinensis HOM05D005792 ORTHO05D007171 3.3e-122 442.2 302 70.5
Glyma.06G019900 Glycine max HOM05D005792 ORTHO05D007171 4.3e-122 441.8 305 71.1
Lsat_1_v5_gn_2_5940 Lactuca sativa HOM05D005792 ORTHO05D007171 1.3e-121 440.3 306 70.3
AUR62013837 Chenopodium quinoa HOM05D005792 ORTHO05D007171 1.6e-121 439.9 302 68.9
Ciclev10001939m.g Citrus clementina HOM05D005792 ORTHO05D007171 6.2e-121 438.0 307 70.0
RcHm_v2.0_Chr6g0303911 Rosa chinensis HOM05D005792 ORTHO05D007171 8.1e-121 437.6 305 68.5
Atru.chr13.183 Acer truncatum HOM05D005792 ORTHO05D007171 1.4e-120 436.8 308 69.2
Rhsim06G0009800 Rhododendron simsii HOM05D005792 ORTHO05D007171 1.4e-120 436.8 311 68.5
Sed0026749 Sechium edule HOM05D005792 ORTHO05D007171 1.8e-120 436.4 305 67.9
Lalb_Chr23g0265871 Lupinus albus HOM05D005792 ORTHO05D007171 2.4e-120 436.0 311 68.2
Manes.05G141100 Manihot esculenta HOM05D005792 ORTHO05D007171 9.0e-120 434.1 307 69.4
Glyma.04G019600 Glycine max HOM05D005792 ORTHO05D007171 7.6e-119 431.0 311 69.1
PSO541G2987 Papaver somniferum HOM05D005792 ORTHO05D007171 7.6e-119 431.0 302 68.2
DCAR_016749 Daucus carota HOM05D005792 ORTHO05D007171 1.3e-118 430.3 365 59.2
Cfa014030 Carpinus fangiana HOM05D000201 ORTHO05D004673 2.2e-118 429.5 280 73.6
Actinidia15473 Actinidia chinensis HOM05D005792 ORTHO05D007171 3.8e-118 428.7 322 67.1
CsaV3_2G024540 Cucumis sativus L. HOM05D005792 ORTHO05D007171 6.4e-118 427.9 306 66.0
BcaC08g47286 Brassica carinata HOM05D005792 ORTHO05D007171 5.5e-117 424.9 308 66.6
SGA_v2.0_scaffold351G49656 Striga asiatica HOM05D005792 ORTHO05D007171 7.1e-117 424.5 315 67.6
AL2G36210 Arabidopsis lyrata HOM05D005792 ORTHO05D007171 9.3e-117 424.1 306 67.0
AT1G76150 Arabidopsis thaliana HOM05D005792 ORTHO05D007171 9.3e-117 424.1 308 66.6
Sed0027939 Sechium edule HOM05D005792 ORTHO05D007171 9.3e-117 424.1 305 65.2
Thhalv10018917m.g Eutrema salsugineum HOM05D005792 ORTHO05D007171 1.2e-116 423.7 306 66.0
MELO3C011330.2 Cucumis melo HOM05D005792 ORTHO05D007171 6.0e-116 421.4 325 63.4
Carub.0002s2304 Capsella rubella HOM05D005792 ORTHO05D007171 2.3e-115 419.5 308 65.9
Atru.chr1.2256 Acer truncatum HOM05D005792 ORTHO05D007171 5.1e-115 418.3 312 65.1
Haze_22736 Corylus avellana HOM05D005792 ORTHO05D007171 6.7e-115 417.9 289 69.9
Sp5g31280 Schrenkiella parvula HOM05D005792 ORTHO05D007171 1.1e-114 417.2 309 66.0
MBI08_g05391_MAGBIO Magnolia biondii HOM05D005792 ORTHO05D007171 1.5e-114 416.8 283 72.4
CARHR069700 Cardamine hirsuta HOM05D005792 ORTHO05D007171 2.5e-114 416.0 308 66.2
arahy.Tifrunner.gnm1.ann1.NZM2IS Arachis hypogaea HOM05D005792 ORTHO05D007171 3.3e-114 415.6 337 62.3
Duzib116G0262 Durio zibethinus HOM05D005792 ORTHO05D007171 2.1e-113 412.9 279 70.6
TAR625G0413 Trochodendron aralioides HOM05D005792 ORTHO05D007171 6.2e-113 411.4 284 72.2
C06p50100 Brassica napus HOM05D005792 ORTHO05D007171 6.9e-112 407.9 308 64.6
Gohir.A05G255200 Gossypium hirsutum HOM05D005792 ORTHO05D007171 1.2e-111 407.1 310 65.8
A07p41720 Brassica napus HOM05D005792 ORTHO05D007171 5.8e-111 404.8 308 64.3
BraA07t31701Z Brassica rapa HOM05D005792 ORTHO05D007171 2.2e-110 402.9 306 64.7
BcaNung05119 Brassica carinata HOM05D005792 ORTHO05D007171 1.9e-109 399.8 308 64.3
Os09g0544900 Oryza sativa ssp. japonica HOM05D005792 ORTHO05D007171 1.9e-109 399.8 313 63.3
Nitab4.5_0000588g0300 Nicotiana tabacum HOM05D005792 ORTHO05D007171 4.2e-109 398.7 310 68.1
Aa31LG4G6270 Aethionema arabicum HOM05D005792 ORTHO05D007171 2.3e-107 392.9 308 63.3
BolC6t40050H Brassica oleracea HOM05D005792 ORTHO05D007171 2.0e-103 379.8 355 55.2
DCAR_013899 Daucus carota HOM05D005792 ORTHO05D007171 2.6e-103 379.4 305 62.0
FAN27G1567 Fragaria x ananassa HOM05D000201 ORTHO05D004673 3.4e-103 379.0 281 66.9
FAN15G3656 Fragaria x ananassa HOM05D000201 ORTHO05D004673 1.9e-101 373.2 281 66.2
ClCG08G013930 Citrullus lanatus HOM05D005792 ORTHO05D007171 7.2e-101 371.3 345 55.7
Pp3c4_24330 Physcomitrium patens HOM05D005792 ORTHO05D007171 1.2e-95 354.0 313 56.5
Ah.11g040640 Amaranthus hybridus HOM05D005792 ORTHO05D007171 2.6e-95 352.8 301 58.5
PSO675G2870 Papaver somniferum HOM05D005792 ORTHO05D007171 1.2e-92 344.0 301 58.5
SHI08027 Sapria himalayana HOM05D005792 ORTHO05D007171 6.3e-89 331.6 295 56.9
BcaC08g47109 Brassica carinata HOM05D005792 ORTHO05D007171 4.1e-88 328.9 300 56.3
COL.COLO4_26053 Corchorus olitorius HOM05D005792 ORTHO05D007171 1.2e-87 327.4 313 56.5
AUR62036768 Chenopodium quinoa HOM05D005792 ORTHO05D007171 3.2e-85 319.3 282 58.5
Haze_22722 Corylus avellana HOM05D005792 ORTHO05D007171 9.4e-85 317.8 281 59.1
SMO174G0111 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 9.4e-85 317.8 303 54.5
MSTRG.25290 Avicennia marina HOM05D005792 ORTHO05D007171 8.8e-83 311.2 198 74.2
Phvul.009G020900 Phaseolus vulgaris HOM05D005792 ORTHO05D007171 2.0e-82 310.1 218 68.3
Zm00001eb104070 Zea mays HOM05D005792 ORTHO05D007171 9.7e-82 307.8 224 67.4
Gohir.D02G118150 Gossypium hirsutum HOM05D005792 ORTHO05D007171 6.3e-81 305.1 224 66.5
Oeu021471.1 Olea europaea HOM05D005792 ORTHO05D007171 1.6e-76 290.4 194 69.6
Mapoly0135s0031 Marchantia polymorpha HOM05D005792 ORTHO05D007171 1.2e-71 274.2 310 45.8
SEGI_22358 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 2.5e-69 266.5 200 68.0
ATR0661G150 Amborella trichopoda HOM05D005792 ORTHO05D007171 7.2e-69 265.0 192 68.8
TAR625G0324 Trochodendron aralioides HOM05D005792 ORTHO05D007171 2.3e-67 260.0 166 76.5
arahy.Tifrunner.gnm1.ann1.CIDL5D Arachis hypogaea HOM05D005792 ORTHO05D007171 5.2e-67 258.8 198 62.6
Zm00001eb321160 Zea mays HOM05D005792 ORTHO05D007171 1.8e-64 250.4 214 57.5
Sabra02G0010800 Salix brachista HOM05D005792 ORTHO05D007171 3.3e-61 239.6 242 55.4
TPR.G38109 Trifolium pratense HOM05D005792 ORTHO05D007171 1.6e-55 220.7 304 43.4
AagrBONN_evm.TU.Sc2ySwM_117.3246 Anthoceros agrestis HOM05D005792 ORTHO05D007171 1.3e-54 217.6 203 56.7
CBR_g50912 Chara braunii HOM05D005792 ORTHO05D007171 6.6e-54 215.3 398 35.9
Actinidia17028 Actinidia chinensis HOM05D005792 ORTHO05D007171 5.6e-53 212.2 162 64.2
CDE05G1591 Ceratophyllum demersum HOM05D005792 ORTHO05D007171 1.0e-51 208.0 157 62.4
TPR.G753 Trifolium pratense HOM05D005792 ORTHO05D007171 2.8e-44 183.3 137 66.4
CSS0030340 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 6.4e-41 172.2 131 67.2
TAR625G0970 Trochodendron aralioides HOM05D005792 ORTHO05D007171 3.2e-40 169.9 107 72.9
Cre06.g308100 Chlamydomonas reinhardtii HOM05D005792 ORTHO05D007171 2.5e-37 160.2 285 35.4
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 2.0e-34 150.6 288 34.7
Hund05135 Selenicereus undatus HOM05D005792 ORTHO05D007171 3.4e-34 149.8 279 34.4
HPP92_014386 Vanilla planifolia HOM05D005792 ORTHO05D007171 9.5e-29 131.7 113 54.9
SalBow6G2635 Salvia bowleyana HOM05D005792 ORTHO05D007171 1.6e-28 131.0 83 74.7
CBR_g22029 Chara braunii HOM05D005792 ORTHO05D007171 9.9e-26 121.7 151 45.7
SMO174G0016 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 2.9e-17 93.6 81 60.5
Sabra02G0010700 Salix brachista HOM05D000201 ORTHO05D000490 6.6e-14 82.4 59 62.7
ATR0661G053 Amborella trichopoda HOM05D005792 ORTHO05D007171 4.3e-13 79.7 51 66.7
SMO174G0053 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 9.6e-13 78.6 79 53.2
Mapoly0033s0029 Marchantia polymorpha HOM05D005792 ORTHO05D007171 6.2e-12 75.9 161 33.5
COL.COLO4_12452 Corchorus olitorius HOM05D005792 ORTHO05D007171 1.1e-11 75.1 73 50.7
SEGI_02138 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 3.2e-08 63.5 46 58.7


User provided reference genes

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