Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G401.21 Capsicum annuum HOM05D003173 ORTHO05D003546 2.3e-129 465.7 254 100.0
Sopen12g031280 Solanum pennellii HOM05D003173 ORTHO05D003546 3.9e-97 358.6 253 82.6
PGSC0003DMG400029419 Solanum tuberosum HOM05D003173 ORTHO05D003546 9.7e-96 354.0 253 80.6
Solyc12g094390.1 Solanum lycopersicum HOM05D003173 ORTHO05D003546 3.4e-93 345.5 253 78.3
Nitab4.5_0000498g0080 Nicotiana tabacum HOM05D003173 ORTHO05D003546 5.9e-77 291.6 257 64.6
Nitab4.5_0002353g0090 Nicotiana tabacum HOM05D003173 ORTHO05D003546 3.2e-75 285.8 255 62.7
Peaxi162Scf00064g00081 Petunia axillaris HOM05D003173 ORTHO05D003546 7.0e-62 241.5 254 59.8
PGSC0003DMG400009955 Solanum tuberosum HOM05D003173 ORTHO05D003546 2.7e-45 186.4 263 49.8
Peaxi162Scf00744g00026 Petunia axillaris HOM05D003173 ORTHO05D003546 4.3e-43 179.1 260 46.9
Peaxi162Scf00174g00083 Petunia axillaris HOM05D003173 ORTHO05D003546 3.6e-42 176.0 260 46.5
Sopen04g035610 Solanum pennellii HOM05D003173 ORTHO05D003546 2.3e-41 173.3 261 46.4
Solyc04g081960.1 Solanum lycopersicum HOM05D003173 ORTHO05D003546 3.1e-41 172.9 263 45.2
Cc10_g01130 Coffea canephora HOM05D003173 ORTHO05D003546 4.0e-33 146.0 278 43.9
Nitab4.5_0003030g0080 Nicotiana tabacum HOM05D003173 ORTHO05D003546 4.9e-31 139.0 205 49.3
Actinidia15462 Actinidia chinensis HOM05D003173 ORTHO05D003546 1.4e-30 137.5 263 40.7
TAR628G1607 Trochodendron aralioides HOM05D003173 ORTHO05D003546 1.9e-30 137.1 267 40.1
Thecc.08G051800 Theobroma cacao HOM05D003173 ORTHO05D003546 7.1e-30 135.2 264 39.8
Duzib093G0730 Durio zibethinus HOM05D003173 ORTHO05D003546 9.2e-30 134.8 261 41.0
Duzib116G0616 Durio zibethinus HOM05D003173 ORTHO05D003546 3.5e-29 132.9 267 40.1
Manes.18G009300 Manihot esculenta HOM05D003173 ORTHO05D003546 1.3e-28 131.0 266 39.1
Glyma.14G222400 Glycine max HOM05D003173 ORTHO05D003546 2.3e-28 130.2 265 41.5
CSS0006148 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 3.9e-28 129.4 272 39.3
Ca_13485_v3 Cicer arietinum L. HOM05D003173 ORTHO05D003546 6.6e-28 128.6 262 38.2
EL10Ac1g02082 Beta vulgaris HOM05D003173 ORTHO05D003546 1.1e-27 127.9 294 41.8
Oeu026120.1 Olea europaea HOM05D003173 ORTHO05D003546 1.5e-27 127.5 261 40.2
Rhsim06G0012200 Rhododendron simsii HOM05D003173 ORTHO05D003546 1.9e-27 127.1 263 36.5
TAR381G1677 Trochodendron aralioides HOM05D003173 ORTHO05D003546 2.5e-27 126.7 263 41.4
TAR376G0945 Trochodendron aralioides HOM05D003173 ORTHO05D003546 4.3e-27 125.9 261 38.7
Haze_22703 Corylus avellana HOM05D003173 ORTHO05D003546 5.6e-27 125.6 276 39.9
Gohir.D05G185800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 5.6e-27 125.6 270 45.2
Gorai.009G191200 Gossypium raimondii HOM05D003173 ORTHO05D003546 5.6e-27 125.6 270 38.5
VMungo0647G1822 Vigna mungo HOM05D003173 ORTHO05D003546 5.6e-27 125.6 272 39.7
PGR031G0086 Punica granatum HOM05D003173 ORTHO05D003546 7.3e-27 125.2 279 37.6
arahy.Tifrunner.gnm1.ann1.WLLD0D Arachis hypogaea HOM05D003173 ORTHO05D003546 9.6e-27 124.8 275 43.3
COL.COLO4_26083 Corchorus olitorius HOM05D003173 ORTHO05D003546 1.2e-26 124.4 264 38.3
Dinv31893 Davidia involucrata HOM05D003173 ORTHO05D003546 1.2e-26 124.4 269 39.0
Phvul.001G002200 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 1.2e-26 124.4 268 39.2
Gohir.A05G182800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 4.7e-26 122.5 267 39.0
Potri.002G016500 Populus trichocarpa HOM05D003173 ORTHO05D003546 4.7e-26 122.5 269 38.7
Cfa014008 Carpinus fangiana HOM05D003173 ORTHO05D003546 6.2e-26 122.1 271 40.2
CiPaw.07G143600 Carya illinoinensis HOM05D003173 ORTHO05D003546 1.1e-25 121.3 268 38.1
Atru.chr13.216 Acer truncatum HOM05D003173 ORTHO05D003546 1.4e-25 120.9 299 40.5
Aqoxy6G01958 Aquilegia oxysepala HOM05D003173 ORTHO05D003546 1.4e-25 120.9 268 42.2
Migut.N03186 Erythranthe guttata HOM05D003173 ORTHO05D003546 1.4e-25 120.9 272 38.6
Lalb_Chr19g0131611 Lupinus albus HOM05D003173 ORTHO05D003546 3.1e-25 119.8 296 38.5
Migut.C00894 Erythranthe guttata HOM05D003173 ORTHO05D003546 6.9e-25 118.6 254 38.6
Phvul.009G019900 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 2.0e-24 117.1 282 35.5
MSTRG.24229 Avicennia marina HOM05D003173 ORTHO05D003546 2.6e-24 116.7 272 36.0
CiPaw.08G069200 Carya illinoinensis HOM05D003173 ORTHO05D003546 4.4e-24 115.9 280 40.4
Sabra02G0013200 Salix brachista HOM05D003173 ORTHO05D003546 4.4e-24 115.9 263 37.6
MBI09_g01020_MAGBIO Magnolia biondii HOM05D003173 ORTHO05D003546 7.6e-24 115.2 258 39.9
Lalb_Chr23g0265991 Lupinus albus HOM05D003173 ORTHO05D003546 2.2e-23 113.6 260 37.7
Medtr3g114750 Medicago truncatula HOM05D003173 ORTHO05D003546 2.2e-23 113.6 266 41.7
Medtr1g026110 Medicago truncatula HOM05D003173 ORTHO05D003546 2.9e-23 113.2 260 36.5
QL02p012938 Quercus lobata HOM05D003173 ORTHO05D003546 2.9e-23 113.2 278 34.5
Ciclev10002153m.g Citrus clementina HOM05D003173 ORTHO05D003546 3.8e-23 112.8 276 34.4
Manes.05G142500 Manihot esculenta HOM05D003173 ORTHO05D003546 3.8e-23 112.8 266 36.8
vmacro04379 Vaccinium macrocarpon HOM05D003173 ORTHO05D003546 3.8e-23 112.8 272 37.5
Nn6g31907 Nelumbo nucifera HOM05D003173 ORTHO05D003546 6.4e-23 112.1 274 35.8
Psat6g001080 Pisum sativum HOM05D003173 ORTHO05D003546 6.4e-23 112.1 268 35.1
TPR.G38194 Trifolium pratense HOM05D003173 ORTHO05D003546 8.4e-23 111.7 257 39.3
CANSAT25G2829 Cannabis sativa HOM05D003173 ORTHO05D003546 1.4e-22 110.9 283 35.0
ECA233G2815 Erigeron canadensis HOM05D003173 ORTHO05D003546 1.4e-22 110.9 287 31.7
SalBow7G1496 Salvia bowleyana HOM05D003173 ORTHO05D003546 1.4e-22 110.9 258 39.1
VMungo1309G1265 Vigna mungo HOM05D003173 ORTHO05D003546 1.4e-22 110.9 275 33.1
Potri.005G245600 Populus trichocarpa HOM05D003173 ORTHO05D003546 4.2e-22 109.4 269 36.4
Psat5g012200 Pisum sativum HOM05D003173 ORTHO05D003546 5.4e-22 109.0 254 37.8
TPR.G26427 Trifolium pratense HOM05D003173 ORTHO05D003546 9.3e-22 108.2 277 35.4
Gohir.D05G257500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 1.2e-21 107.8 264 34.8
FvH4_2g37950 Fragaria vesca HOM05D003173 ORTHO05D003546 2.1e-21 107.1 279 35.1
Glyma.17G261300 Glycine max HOM05D003173 ORTHO05D003546 3.5e-21 106.3 260 36.9
Gohir.A05G255800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 3.5e-21 106.3 265 34.7
Oeu051144.1 Olea europaea HOM05D003173 ORTHO05D003546 3.5e-21 106.3 271 34.7
CSS0021479 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 6.0e-21 105.5 264 38.3
Lsat_1_v5_gn_8_29221 Lactuca sativa HOM05D003173 ORTHO05D003546 6.0e-21 105.5 306 33.7
CSS0028811 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 7.8e-21 105.1 264 38.3
Cpa.g.sc26.264 Carica papaya HOM05D003173 ORTHO05D003546 1.0e-20 104.8 255 38.0
Hma1.2p1_0023F.1_g015790 Hydrangea macrophylla HOM05D003173 ORTHO05D003546 1.0e-20 104.8 260 35.0
TWI56G0288 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 1.3e-20 104.4 257 36.2
Gorai.009G268900 Gossypium raimondii HOM05D003173 ORTHO05D003546 1.7e-20 104.0 259 35.5
Glyma.06G020800 Glycine max HOM05D003173 ORTHO05D003546 3.0e-20 103.2 270 33.0
FAN20G0850 Fragaria x ananassa HOM05D003173 ORTHO05D003546 3.9e-20 102.8 278 34.9
TWI12G1263 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 5.1e-20 102.4 260 34.6
DCAR_016740 Daucus carota HOM05D000228 ORTHO05D001545 6.6e-20 102.1 297 34.0
Sabra05G0189700 Salix brachista HOM05D003173 ORTHO05D003546 8.7e-20 101.7 261 33.7
arahy.Tifrunner.gnm1.ann1.S3QWAM Arachis hypogaea HOM05D003173 ORTHO05D003546 1.1e-19 101.3 281 35.6
MELO3C003727.2 Cucumis melo HOM05D003173 ORTHO05D003546 1.1e-19 101.3 261 34.9
Glyma.04G020700 Glycine max HOM05D003173 ORTHO05D003546 1.1e-19 101.3 272 35.7
arahy.Tifrunner.gnm1.ann1.YK013F Arachis hypogaea HOM05D003173 ORTHO05D003546 1.5e-19 100.9 281 35.6
FAN15G3480 Fragaria x ananassa HOM05D003173 ORTHO05D003546 1.9e-19 100.5 280 35.0
Lsat_1_v5_gn_2_6961 Lactuca sativa HOM05D003173 ORTHO05D003546 1.9e-19 100.5 298 30.9
SGA_v2.0_scaffold19G08585 Striga asiatica HOM05D003173 ORTHO05D003546 1.9e-19 100.5 250 34.4
FAN27G2702 Fragaria x ananassa HOM05D003173 ORTHO05D003546 2.5e-19 100.1 280 36.1
Actinidia29769 Actinidia chinensis HOM05D000228 ORTHO05D001545 3.3e-19 99.8 259 34.7
PSO541G5041 Papaver somniferum HOM05D003173 ORTHO05D003546 9.6e-19 98.2 265 31.3
ClCG05G015410 Citrullus lanatus HOM05D003173 ORTHO05D003546 1.3e-18 97.8 256 34.4
Dinv39556 Davidia involucrata HOM05D003173 ORTHO05D003546 2.1e-18 97.1 234 37.6
Oeu039861.1 Olea europaea HOM05D003173 ORTHO05D003546 2.8e-18 96.7 203 36.9
Oeu057579.1 Olea europaea HOM05D003173 ORTHO05D003546 2.8e-18 96.7 203 36.9
RcHm_v2.0_Chr6g0303671 Rosa chinensis HOM05D003173 ORTHO05D003546 2.8e-18 96.7 280 39.6
Lalb_Chr08g0246301 Lupinus albus HOM05D003173 ORTHO05D003546 1.1e-17 94.7 197 37.6
Prupe.1G359400 Prunus persica HOM05D003173 ORTHO05D003546 1.4e-17 94.4 273 33.3
Lalb_Chr03g0033561 Lupinus albus HOM05D003173 ORTHO05D003546 1.8e-17 94.0 274 36.1
Sc15g0004670 Simmondsia chinensis HOM05D003173 ORTHO05D003546 2.4e-17 93.6 256 34.8
Nn5g30846 Nelumbo nucifera HOM05D003173 ORTHO05D003546 4.0e-17 92.8 263 33.1
CARHR069610 Cardamine hirsuta HOM05D003173 ORTHO05D003546 9.0e-17 91.7 275 37.8
HanXRQChr14g0428491 Helianthus annuus HOM05D003173 ORTHO05D003546 1.2e-16 91.3 284 31.0
Carub.0002s2296 Capsella rubella HOM05D003173 ORTHO05D003546 1.7e-15 87.4 272 33.1
Lj5g0013533 Lotus japonicus HOM05D003173 ORTHO05D003546 4.9e-15 85.9 282 33.0
PSO675G7160 Papaver somniferum HOM05D003173 ORTHO05D003546 6.4e-15 85.5 267 31.8
ATR0661G366 Amborella trichopoda HOM05D003173 ORTHO05D003546 1.1e-14 84.7 250 30.0
AT1G76070 Arabidopsis thaliana HOM05D003173 ORTHO05D003546 1.1e-14 84.7 269 33.8
Ca_15466_v3 Cicer arietinum L. HOM05D003173 ORTHO05D003546 1.1e-14 84.7 119 52.1
DCAR_025088 Daucus carota HOM05D003173 ORTHO05D003546 1.9e-14 84.0 259 33.2
Eucgr.J02492 Eucalyptus grandis HOM05D003173 ORTHO05D003546 2.4e-14 83.6 264 32.2
BolC6t40040H Brassica oleracea HOM05D003173 ORTHO05D003546 4.2e-14 82.8 273 38.1
A07p41630 Brassica napus HOM05D003173 ORTHO05D003546 7.1e-14 82.0 263 36.1
BraA07t31692Z Brassica rapa HOM05D003173 ORTHO05D003546 7.1e-14 82.0 267 34.1
BraA02t07073Z Brassica rapa HOM05D003173 ORTHO05D003546 9.3e-14 81.6 264 36.0
Sp1g18040 Schrenkiella parvula HOM05D003173 ORTHO05D003546 2.1e-13 80.5 270 28.5
AL2G36110 Arabidopsis lyrata HOM05D003173 ORTHO05D003546 3.5e-13 79.7 276 36.2
Sp5g31190 Schrenkiella parvula HOM05D003173 ORTHO05D003546 4.6e-13 79.3 269 36.4
unitig_32.g11393 Utricularia gibba HOM05D002221 ORTHO05D002626 4.6e-13 79.3 240 30.8
BcaC08g47100 Brassica carinata HOM05D003173 ORTHO05D003546 6.0e-13 79.0 276 34.4
Aa31LG4G6190 Aethionema arabicum HOM05D003173 ORTHO05D003546 7.9e-13 78.6 280 36.8
CsaV3_3G046130 Cucumis sativus L. HOM05D003173 ORTHO05D003546 1.0e-12 78.2 183 38.3
ECA238G0569 Erigeron canadensis HOM05D000315 ORTHO05D000527 1.3e-12 77.8 285 27.4
CDE05G3154 Ceratophyllum demersum HOM05D001535 ORTHO05D003710 2.3e-12 77.0 261 28.7
Ah.00g000650 Amaranthus hybridus HOM05D003173 ORTHO05D003546 3.0e-12 76.6 131 51.1
BcaB07g32036 Brassica carinata HOM05D003173 ORTHO05D003546 3.0e-12 76.6 275 29.1
BraA06t24743Z Brassica rapa HOM05D003173 ORTHO05D003546 3.0e-12 76.6 275 29.5
Actinidia37954 Actinidia chinensis HOM05D003173 ORTHO05D003546 8.7e-12 75.1 201 35.8
THA.LOC104811444 Tarenaya hassleriana HOM05D003173 ORTHO05D003546 8.7e-12 75.1 280 30.0
BcaC08g47302 Brassica carinata HOM05D003173 ORTHO05D003546 1.1e-11 74.7 268 36.6
BraA07t29310Z Brassica rapa HOM05D003173 ORTHO05D003546 1.5e-11 74.3 266 30.1
A07p15840 Brassica napus HOM05D003173 ORTHO05D003546 1.9e-11 73.9 266 30.1
Thhalv10009337m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 2.5e-11 73.6 274 28.8
HPP92_002481 Vanilla planifolia HOM05D003173 ORTHO05D003546 2.5e-11 73.6 212 29.2
DCAR_009512 Daucus carota HOM05D003173 ORTHO05D003546 3.3e-11 73.2 275 30.2
A06p16390 Brassica napus HOM05D003173 ORTHO05D003546 5.6e-11 72.4 275 29.1
Carub.0001s1981 Capsella rubella HOM05D003173 ORTHO05D003546 5.6e-11 72.4 268 28.0
BcaB03g14324 Brassica carinata HOM05D003173 ORTHO05D003546 7.4e-11 72.0 269 29.0
Thhalv10018992m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 7.4e-11 72.0 279 35.5
Hma1.2p1_1598F.1_g292960 Hydrangea macrophylla HOM05D003173 ORTHO05D003546 7.4e-11 72.0 202 34.7
Sed0006911 Sechium edule HOM05D003173 ORTHO05D003546 7.4e-11 72.0 257 31.5
GSVIVG01008738001 Vitis vinifera HOM05D003173 ORTHO05D003546 1.3e-10 71.2 176 36.4
Lalb_Chr01g0008491 Lupinus albus HOM05D003173 ORTHO05D003546 1.6e-10 70.9 216 32.9
A02p20410 Brassica napus HOM05D003173 ORTHO05D003546 2.1e-10 70.5 261 34.5
A07p15740 Brassica napus HOM05D003173 ORTHO05D003546 2.1e-10 70.5 232 30.2
AT1G20310 Arabidopsis thaliana HOM05D003173 ORTHO05D003546 3.6e-10 69.7 276 28.6
unitig_748.g7605 Utricularia gibba HOM05D003173 ORTHO05D003546 3.6e-10 69.7 197 32.0
BolC7t42850H Brassica oleracea HOM05D003173 ORTHO05D003546 1.1e-09 68.2 269 29.4
C02p33480 Brassica napus HOM05D003173 ORTHO05D003546 1.8e-09 67.4 266 33.8
BolC2t09356H Brassica oleracea HOM05D003173 ORTHO05D003546 1.8e-09 67.4 266 33.8
BcaC03g15643 Brassica carinata HOM05D003173 ORTHO05D003546 2.4e-09 67.0 273 34.1
BcaC05g25935 Brassica carinata HOM05D003173 ORTHO05D003546 3.1e-09 66.6 276 27.5
C05p18890 Brassica napus HOM05D003173 ORTHO05D003546 3.1e-09 66.6 276 27.5
BolC5t30588H Brassica oleracea HOM05D003173 ORTHO05D003546 5.3e-09 65.9 276 27.5
PGR102G2057 Punica granatum HOM05D003173 ORTHO05D003546 6.9e-09 65.5 265 29.1
BcaNung03372 Brassica carinata HOM05D003173 ORTHO05D003546 9.0e-09 65.1 269 28.6
C07p23130 Brassica napus HOM05D003173 ORTHO05D003546 9.0e-09 65.1 269 28.6
Duzib264G0532 Durio zibethinus HOM05D003173 ORTHO05D003546 2.0e-08 63.9 188 35.1
AL1G33140 Arabidopsis lyrata HOM05D003173 ORTHO05D003546 2.6e-08 63.5 233 26.2
SHI08021 Sapria himalayana HOM05D003173 ORTHO05D003546 2.6e-08 63.5 229 27.9
SHI05037 Sapria himalayana HOM05D003173 ORTHO05D003546 3.4e-08 63.2 229 29.3
SHI13075 Sapria himalayana HOM05D003173 ORTHO05D003546 1.7e-07 60.8 229 27.9
BcaB05g24968 Brassica carinata HOM05D003173 ORTHO05D003546 2.9e-07 60.1 261 33.7
BcaC08g47295 Brassica carinata HOM05D003173 ORTHO05D003546 3.8e-07 59.7 101 46.5
Zm00001eb103980 Zea mays HOM05D003173 ORTHO05D003546 3.8e-07 59.7 244 26.2
Thecc.01G011100 Theobroma cacao HOM05D003173 ORTHO05D003546 6.4e-07 58.9 187 29.4
Aa31LG7G4670 Aethionema arabicum HOM05D003173 ORTHO05D003546 1.4e-06 57.8 214 32.7
Gohir.A02G174600 Gossypium hirsutum HOM05D036397 ORTHO05D003546 9.3e-06 55.1 132 31.8
HanXRQChr12g0366681 Helianthus annuus HOM05D003173 ORTHO05D003546 9.3e-06 55.1 209 32.1


User provided reference genes

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