Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G400.3 Capsicum annuum HOM05D002813 ORTHO05D003203 9.0e-87 323.6 163 100.0
PGSC0003DMG400002228 Solanum tuberosum HOM05D002813 ORTHO05D003203 3.9e-74 281.6 163 86.5
Nitab4.5_0003794g0040 Nicotiana tabacum HOM05D002813 ORTHO05D003203 2.2e-72 275.8 161 84.5
Sopen08g020490 Solanum pennellii HOM05D002813 ORTHO05D003203 2.8e-72 275.4 163 85.3
Nitab4.5_0028416g0010 Nicotiana tabacum HOM05D002813 ORTHO05D003203 1.2e-70 270.0 163 82.2
Dinv27902 Davidia involucrata HOM05D002813 ORTHO05D003203 1.8e-47 193.0 162 59.9
PGSC0003DMG400010583 Solanum tuberosum HOM05D002813 ORTHO05D003203 4.1e-47 191.8 110 86.4
CAN.G953.3 Capsicum annuum HOM05D002813 ORTHO05D003203 3.6e-43 178.7 114 84.2
GSVIVG01035624001 Vitis vinifera HOM05D002813 ORTHO05D003203 1.4e-42 176.8 160 56.2
QL12p041358 Quercus lobata HOM05D002813 ORTHO05D003203 7.5e-41 171.0 153 56.2
Eucgr.C02935 Eucalyptus grandis HOM05D002813 ORTHO05D003203 6.3e-40 167.9 162 51.2
Potri.006G238300 Populus trichocarpa HOM05D002813 ORTHO05D003203 6.3e-40 167.9 162 54.3
Peaxi162Scf00227g00722 Petunia axillaris HOM05D002813 ORTHO05D003203 1.6e-38 163.3 101 80.2
Gohir.D05G048500 Gossypium hirsutum HOM05D002813 ORTHO05D003203 5.9e-38 161.4 162 52.5
Gohir.A05G046700 Gossypium hirsutum HOM05D002813 ORTHO05D003203 7.7e-38 161.0 162 52.5
Gorai.009G049800 Gossypium raimondii HOM05D002813 ORTHO05D003203 1.0e-37 160.6 162 52.5
Duzib168G2404 Durio zibethinus HOM05D002813 ORTHO05D003203 2.2e-37 159.5 162 53.1
Nn2g11622 Nelumbo nucifera HOM05D002813 ORTHO05D003203 2.9e-37 159.1 162 50.0
Manes.16G075500 Manihot esculenta HOM05D002813 ORTHO05D003203 1.9e-36 156.4 148 56.1
Prupe.1G448200 Prunus persica HOM05D002813 ORTHO05D003203 4.2e-36 155.2 153 52.3
TAR626G1934 Trochodendron aralioides HOM05D002813 ORTHO05D003203 7.2e-36 154.5 162 47.5
CiPaw.07G204200 Carya illinoinensis HOM05D002813 ORTHO05D003203 1.2e-35 153.7 162 46.9
QL12p041353 Quercus lobata HOM05D002813 ORTHO05D003203 1.8e-34 149.8 153 50.3
Actinidia14674 Actinidia chinensis HOM05D002813 ORTHO05D003203 5.2e-34 148.3 138 52.9
MSTRG.9106 Avicennia marina HOM05D002813 ORTHO05D003203 8.8e-34 147.5 163 49.7
Sc23g0005220 Simmondsia chinensis HOM05D002813 ORTHO05D003203 8.8e-34 147.5 160 45.6
QL12p041348 Quercus lobata HOM05D002813 ORTHO05D003203 1.2e-33 147.1 153 47.1
SEGI_38686 Sequoiadendron giganteum HOM05D002813 ORTHO05D003203 3.4e-33 145.6 160 46.9
ATR0705G192 Amborella trichopoda HOM05D002813 ORTHO05D003203 3.7e-32 142.1 162 47.5
SGA_v2.0_scaffold103G30003 Striga asiatica HOM05D002813 ORTHO05D003203 6.3e-32 141.4 161 46.6
Ciclev10010367m.g Citrus clementina HOM05D002813 ORTHO05D003203 8.3e-32 141.0 162 45.7
TWI63G1080 Tripterygium wilfordii HOM05D002813 ORTHO05D003203 7.0e-31 137.9 160 48.1
Atru.chr7.2088 Acer truncatum HOM05D002813 ORTHO05D003203 2.0e-30 136.3 141 48.9
Cc08_g09560 Coffea canephora HOM05D002813 ORTHO05D003203 1.1e-28 130.6 126 51.6
Mapoly0100s0050 Marchantia polymorpha HOM05D002813 ORTHO05D003203 1.1e-28 130.6 159 40.9
RcHm_v2.0_Chr2g0157391 Rosa chinensis HOM05D002813 ORTHO05D003203 9.5e-28 127.5 153 46.4
FAN02G4465 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.0e-26 124.0 139 50.4
Lsat_1_v5_gn_6_23140 Lactuca sativa HOM05D002813 ORTHO05D003203 1.4e-26 123.6 162 42.0
FvH4_2g32590 Fragaria vesca HOM05D002813 ORTHO05D003203 4.0e-26 122.1 162 45.1
FAN24G0821 Fragaria x ananassa HOM05D002813 ORTHO05D003203 4.0e-26 122.1 162 45.1
MD15G1093400 Malus domestica HOM05D002813 ORTHO05D003203 4.0e-26 122.1 157 41.4
FvH4_6g41671 Fragaria vesca HOM05D002813 ORTHO05D003203 2.0e-25 119.8 139 49.6
FvH4_2g32511 Fragaria vesca HOM05D002813 ORTHO05D003203 4.4e-25 118.6 162 43.8
CSS0022259 Camellia sinensis var. sinensis HOM05D002813 ORTHO05D003203 9.8e-25 117.5 96 60.4
FAN20G2926 Fragaria x ananassa HOM05D002813 ORTHO05D003203 9.8e-25 117.5 139 48.9
FAN27G1770 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.7e-24 116.7 157 45.9
FAN24G2117 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.2e-24 116.3 160 46.9
FvH4_2g32530 Fragaria vesca HOM05D002813 ORTHO05D003203 2.8e-24 115.9 158 47.5
FAN15G1401 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.8e-24 115.9 158 44.9
FAN24G2983 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.1e-23 114.0 157 45.9
SEGI_23038 Sequoiadendron giganteum HOM05D002813 ORTHO05D003203 1.4e-23 113.6 140 41.4
COL.COLO4_20970 Corchorus olitorius HOM05D006532 ORTHO05D008570 3.2e-23 112.5 153 43.8
FvH4_1g05120 Fragaria vesca HOM05D002813 ORTHO05D003203 1.6e-22 110.2 158 44.9
HanXRQChr12g0371761 Helianthus annuus HOM05D002813 ORTHO05D003203 2.0e-22 109.8 162 38.9
FvH4_2g32630 Fragaria vesca HOM05D002813 ORTHO05D003203 4.5e-22 108.6 137 48.2
RcHm_v2.0_Chr5g0073471 Rosa chinensis HOM05D002813 ORTHO05D003203 5.9e-22 108.2 153 41.8
FAN05G5767 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.3e-20 102.4 115 47.8
RcHm_v2.0_Chr6g0307031 Rosa chinensis HOM05D002813 ORTHO05D003203 3.3e-20 102.4 136 41.2
FvH4_2g32520 Fragaria vesca HOM05D002813 ORTHO05D003203 4.3e-20 102.1 139 45.3
FvH4_3g40700 Fragaria vesca HOM05D002813 ORTHO05D003203 9.5e-20 100.9 130 43.1
FAN11G0908 Fragaria x ananassa HOM05D002813 ORTHO05D003203 9.5e-20 100.9 130 43.1
FAN27G2375 Fragaria x ananassa HOM05D002813 ORTHO05D003203 9.5e-20 100.9 114 49.1
ECA248G1211 Erigeron canadensis HOM05D002813 ORTHO05D003203 1.6e-19 100.1 162 38.3
FAN25G1955 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.6e-19 99.0 131 42.7
FAN02G4209 Fragaria x ananassa HOM05D002813 ORTHO05D003203 4.7e-19 98.6 139 41.7
FAN21G1994 Fragaria x ananassa HOM05D002813 ORTHO05D003203 8.0e-19 97.8 131 42.7
FvH4_7g18342 Fragaria vesca HOM05D002813 ORTHO05D003203 1.8e-18 96.7 148 40.5
FAN06G0128 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.8e-18 96.7 139 41.7
FAN06G4693 Fragaria x ananassa HOM05D000201 ORTHO05D007118 1.8e-18 96.7 148 40.5
FAN14G5169 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.8e-18 96.7 139 41.7
RcHm_v2.0_Chr6g0307021 Rosa chinensis HOM05D002813 ORTHO05D003203 1.8e-18 96.7 136 40.4
FAN16G0815 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.3e-18 96.3 130 42.3
FvH4_5g12200 Fragaria vesca HOM05D002813 ORTHO05D003203 3.1e-18 95.9 143 41.3
FvH4_7g29850 Fragaria vesca HOM05D002813 ORTHO05D003203 3.1e-18 95.9 139 41.0
FAN02G0699 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.1e-18 95.9 139 41.0
FAN06G0370 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.1e-18 95.9 139 41.0
FAN15G1989 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.1e-18 95.9 151 40.4
FAN25G2464 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.1e-18 95.9 139 41.0
HanXRQChr12g0371741 Helianthus annuus HOM05D002813 ORTHO05D003203 5.2e-18 95.1 146 37.7
FvH4_3g00150 Fragaria vesca HOM05D002813 ORTHO05D003203 6.8e-18 94.7 144 38.9
FvH4_2g32610 Fragaria vesca HOM05D002813 ORTHO05D003203 8.9e-18 94.4 151 41.7
FAN08G1174 Fragaria x ananassa HOM05D002813 ORTHO05D003203 8.9e-18 94.4 141 41.1
FAN13G2791 Fragaria x ananassa HOM05D002813 ORTHO05D003203 8.9e-18 94.4 141 41.1
FvH4_5g12160 Fragaria vesca HOM05D002813 ORTHO05D003203 1.2e-17 94.0 141 41.1
FAN04G2105 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.2e-17 94.0 141 41.1
FAN20G2873 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.2e-17 94.0 136 40.4
FvH4_7g07300 Fragaria vesca HOM05D002813 ORTHO05D003203 2.6e-17 92.8 142 41.5
FAN06G2895 Fragaria x ananassa HOM05D000201 ORTHO05D007118 2.6e-17 92.8 144 39.6
FvH4_2g32540 Fragaria vesca HOM05D002813 ORTHO05D003203 4.4e-17 92.0 112 49.1
FvH4_2g34980 Fragaria vesca HOM05D002813 ORTHO05D003203 4.4e-17 92.0 136 39.0
FAN19G0454 Fragaria x ananassa HOM05D002813 ORTHO05D003203 5.8e-17 91.7 132 47.0
FAN27G2509 Fragaria x ananassa HOM05D002813 ORTHO05D003203 7.5e-17 91.3 136 39.7
ECA233G4786 Erigeron canadensis HOM05D006532 ORTHO05D008570 2.2e-16 89.7 123 42.3
FAN04G1781 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.9e-16 89.4 143 40.6
FvH4_5g12190 Fragaria vesca HOM05D002813 ORTHO05D003203 1.1e-15 87.4 147 37.4
FAN18G2715 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.1e-15 87.4 147 37.4
FAN27G2003 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.4e-15 87.0 143 41.3
FvH4_2g37241 Fragaria vesca HOM05D002813 ORTHO05D003203 2.4e-15 86.3 142 40.1
FvH4_3g11280 Fragaria vesca HOM05D002813 ORTHO05D003203 7.0e-15 84.7 146 38.4
FAN15G0916 Fragaria x ananassa HOM05D002813 ORTHO05D003203 9.2e-15 84.3 147 38.1
FvH4_2g35000 Fragaria vesca HOM05D002813 ORTHO05D003203 1.6e-14 83.6 147 39.5
FAN04G3192 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.0e-14 83.2 142 38.7
FAN18G2625 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.0e-14 83.2 147 36.7
FAN20G0435 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.0e-14 83.2 136 36.8
HanXRQChr12g0371751 Helianthus annuus HOM05D002813 ORTHO05D003203 7.8e-14 81.3 110 37.3
FAN15G3400 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.0e-13 80.9 111 39.6
FAN27G0414 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.0e-13 80.9 111 40.5
FAN25G0311 Fragaria x ananassa HOM05D000808 ORTHO05D000863 1.7e-13 80.1 131 38.2
FAN13G3008 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.3e-13 79.7 143 37.1
FAN18G3306 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.3e-13 79.7 154 34.4
FAN27G1144 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.9e-13 79.0 147 36.7
HanXRQChr12g0371771 Helianthus annuus HOM05D002813 ORTHO05D003203 3.9e-13 79.0 110 35.5
FAN21G2238 Fragaria x ananassa HOM05D000437 ORTHO05D003203 6.6e-13 78.2 96 45.8
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 3.3e-12 75.9 125 39.2
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 3.3e-12 75.9 125 39.2
FAN18G3569 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.3e-12 75.9 156 32.7
FAN21G0510 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.3e-12 75.9 142 36.6
FAN02G3428 Fragaria x ananassa HOM05D002813 ORTHO05D003203 4.3e-12 75.5 112 44.6
FAN14G4978 Fragaria x ananassa HOM05D002813 ORTHO05D003203 4.3e-12 75.5 126 37.3
FAN01G2630 Fragaria x ananassa HOM05D002813 ORTHO05D003203 7.3e-12 74.7 142 37.3
FvH4_6g07350 Fragaria vesca HOM05D002813 ORTHO05D003203 2.1e-11 73.2 151 34.4
FAN13G0265 Fragaria x ananassa HOM05D002813 ORTHO05D003203 6.2e-11 71.6 136 36.0
FAN04G0910 Fragaria x ananassa HOM05D002813 ORTHO05D003203 8.0e-11 71.2 119 37.0
FAN18G1460 Fragaria x ananassa HOM05D002813 ORTHO05D003203 8.0e-11 71.2 119 37.0
FAN04G3253 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.4e-10 70.5 143 35.0
FAN18G4233 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.3e-10 69.7 143 35.0
FvH4_5g10370 Fragaria vesca HOM05D002813 ORTHO05D003203 3.1e-10 69.3 109 40.4
FAN27G1742 Fragaria x ananassa HOM05D002813 ORTHO05D003203 4.0e-10 68.9 142 33.8
RcHm_v2.0_Chr3g0468781 Rosa chinensis HOM05D002813 ORTHO05D003203 4.0e-10 68.9 147 34.0
FvH4_5g12240 Fragaria vesca HOM05D002813 ORTHO05D003203 6.8e-10 68.2 143 35.0
FAN18G1397 Fragaria x ananassa HOM05D002813 ORTHO05D003203 6.8e-10 68.2 97 40.2
FAN14G4635 Fragaria x ananassa HOM05D002813 ORTHO05D003203 8.9e-10 67.8 111 39.6
FAN06G2359 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.0e-09 66.6 96 43.8
RcHm_v2.0_Chr7g0185371 Rosa chinensis HOM05D002813 ORTHO05D003203 2.6e-09 66.2 142 35.2
FvH4_2g32600 Fragaria vesca HOM05D002813 ORTHO05D003203 7.5e-09 64.7 133 36.1
FAN05G0887 Fragaria x ananassa HOM05D002813 ORTHO05D003203 9.8e-09 64.3 136 35.3
FAN15G1653 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.3e-08 63.9 92 41.3
FAN08G0212 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.7e-08 63.5 143 30.1
FAN13G0724 Fragaria x ananassa HOM05D001362 ORTHO05D001310 1.7e-08 63.5 152 33.6
FvH4_2g34990 Fragaria vesca HOM05D002813 ORTHO05D003203 2.2e-08 63.2 91 38.5
FvH4_5g33281 Fragaria vesca HOM05D002813 ORTHO05D003203 2.2e-08 63.2 103 35.9
BcaC03g18029 Brassica carinata HOM05D006667 ORTHO05D008387 2.9e-08 62.8 143 32.2
C02p60910 Brassica napus HOM05D006667 ORTHO05D008387 2.9e-08 62.8 143 32.2
Sabra07G0063900 Salix brachista HOM05D006667 ORTHO05D008387 2.9e-08 62.8 144 31.9
FAN09G1205 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.7e-08 62.4 91 41.8
Actinidia04346 Actinidia chinensis HOM05D006667 ORTHO05D008387 4.9e-08 62.0 141 34.8
FAN02G3770 Fragaria x ananassa HOM05D002813 ORTHO05D003203 4.9e-08 62.0 135 34.8
VMungo0720G1985 Vigna mungo HOM05D006667 ORTHO05D008387 6.4e-08 61.6 140 31.4
FAN18G2017 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.1e-07 60.8 99 36.4
RcHm_v2.0_Chr7g0185401 Rosa chinensis HOM05D002813 ORTHO05D003203 1.1e-07 60.8 96 40.6
FvH4_6g15310 Fragaria vesca HOM05D002813 ORTHO05D003203 1.4e-07 60.5 136 33.8
FAN09G1014 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.4e-07 60.5 136 33.8
Glyma.10G286600 Glycine max HOM05D006667 ORTHO05D008387 1.4e-07 60.5 136 30.9
FvH4_5g09361 Fragaria vesca HOM05D002813 ORTHO05D003203 1.9e-07 60.1 152 32.9
FAN18G0728 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.2e-07 59.3 117 34.2
FAN21G0006 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.2e-07 59.3 118 38.1
FAN15G2356 Fragaria x ananassa HOM05D002813 ORTHO05D000003 4.1e-07 58.9 142 31.7
FAN28G0547 Fragaria x ananassa HOM05D002813 ORTHO05D003203 4.1e-07 58.9 89 39.3
FvH4_3g11250 Fragaria vesca HOM05D002813 ORTHO05D003203 5.4e-07 58.5 85 40.0
Migut.L00803 Erythranthe guttata HOM05D006667 ORTHO05D008387 9.2e-07 57.8 140 32.9
CsaV3_5G029020 Cucumis sativus L. HOM05D006667 ORTHO05D008387 1.2e-06 57.4 144 31.2
Dinv07500 Davidia involucrata HOM05D006667 ORTHO05D008387 1.2e-06 57.4 140 32.9
FAN21G2418 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.2e-06 57.4 132 34.1
FAN20G1057 Fragaria x ananassa HOM05D002813 ORTHO05D000003 1.6e-06 57.0 89 37.1
A02p41020 Brassica napus HOM05D006667 ORTHO05D008387 2.7e-06 56.2 139 30.9
BraA02t09050Z Brassica rapa HOM05D006667 ORTHO05D008387 2.7e-06 56.2 139 31.7
MELO3C011757.2 Cucumis melo HOM05D006667 ORTHO05D008387 2.7e-06 56.2 144 31.2
PGSC0003DMG400011513 Solanum tuberosum HOM05D006667 ORTHO05D008387 2.7e-06 56.2 141 27.7
AL6G34600 Arabidopsis lyrata HOM05D006667 ORTHO05D008387 6.0e-06 55.1 139 30.9
FvH4_5g12191 Fragaria vesca HOM05D002813 ORTHO05D003203 6.0e-06 55.1 108 36.1


User provided reference genes

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