Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G400.1 Capsicum annuum HOM05D005027 ORTHO05D005978 2.5e-58 228.4 103 100.0
CAN.G552.8 Capsicum annuum HOM05D005027 ORTHO05D005978 2.0e-44 182.2 100 83.0
Solyc08g066650.3 Solanum lycopersicum HOM05D005027 ORTHO05D005978 8.9e-40 166.8 143 58.7
Sopen08g020520 Solanum pennellii HOM05D005027 ORTHO05D005978 8.9e-40 166.8 143 58.7
Nitab4.5_0001894g0040 Nicotiana tabacum HOM05D005027 ORTHO05D005978 4.4e-39 164.5 143 57.3
Peaxi162Scf00227g00714 Petunia axillaris HOM05D005027 ORTHO05D005978 1.1e-37 159.8 143 55.9
MD08G1113800 Malus domestica HOM05D005027 ORTHO05D005978 2.4e-37 158.7 144 53.5
Oeu030720.1 Olea europaea HOM05D005027 ORTHO05D005978 4.1e-37 157.9 143 54.5
Nitab4.5_0003794g0080 Nicotiana tabacum HOM05D005027 ORTHO05D005978 5.4e-37 157.5 142 55.6
CSS0030796 Camellia sinensis var. sinensis HOM05D005027 ORTHO05D005978 7.0e-37 157.1 143 54.5
VMungo1309G1842 Vigna mungo HOM05D005027 ORTHO05D005978 2.1e-36 155.6 143 53.1
Glyma.04G084100 Glycine max HOM05D005027 ORTHO05D005978 3.5e-36 154.8 143 53.1
Oeu038805.1 Olea europaea HOM05D005027 ORTHO05D005978 3.5e-36 154.8 143 53.8
Aqoxy7G01485 Aquilegia oxysepala HOM05D005027 ORTHO05D005978 4.6e-36 154.5 143 53.1
ClCG08G012240 Citrullus lanatus HOM05D005027 ORTHO05D005978 4.6e-36 154.5 143 53.8
MELO3C011142.2 Cucumis melo HOM05D005027 ORTHO05D005978 4.6e-36 154.5 143 53.8
Lj8A581T28 Lonicera japonica HOM05D005027 ORTHO05D005978 4.6e-36 154.5 143 54.5
MD15G1093500 Malus domestica HOM05D005027 ORTHO05D005978 6.0e-36 154.1 143 53.1
MBI04_g45212_MAGBIO Magnolia biondii HOM05D005027 ORTHO05D005978 7.8e-36 153.7 143 54.5
vmacro11059 Vaccinium macrocarpon HOM05D005027 ORTHO05D005978 7.8e-36 153.7 143 53.1
Atru.chr7.2090 Acer truncatum HOM05D005027 ORTHO05D005978 1.0e-35 153.3 143 52.4
Ca_15593_v3 Cicer arietinum L. HOM05D005027 ORTHO05D005978 1.0e-35 153.3 143 52.4
Medtr3g109610 Medicago truncatula HOM05D005027 ORTHO05D005978 1.0e-35 153.3 143 53.1
Potri.006G238500 Populus trichocarpa HOM05D005027 ORTHO05D005978 1.0e-35 153.3 143 53.1
Potri.018G044100 Populus trichocarpa HOM05D005027 ORTHO05D005978 1.0e-35 153.3 143 53.1
GSVIVG01035626001 Vitis vinifera HOM05D005027 ORTHO05D005978 1.0e-35 153.3 143 52.4
Cc08_g09540 Coffea canephora HOM05D005027 ORTHO05D005978 1.3e-35 152.9 143 53.1
Actinidia13335 Actinidia chinensis HOM05D005027 ORTHO05D005978 1.7e-35 152.5 143 52.4
FAN27G2638 Fragaria x ananassa HOM05D005027 ORTHO05D005978 1.7e-35 152.5 143 52.4
Glyma.06G085800 Glycine max HOM05D005027 ORTHO05D005978 1.7e-35 152.5 143 51.7
Sed0014536 Sechium edule HOM05D005027 ORTHO05D005978 1.7e-35 152.5 143 52.4
TPR.G15106 Trifolium pratense HOM05D005027 ORTHO05D005978 1.7e-35 152.5 143 52.4
CsaV3_2G030870 Cucumis sativus L. HOM05D005027 ORTHO05D005978 2.3e-35 152.1 143 53.1
Migut.A00205 Erythranthe guttata HOM05D005027 ORTHO05D005978 2.3e-35 152.1 143 52.4
FvH4_2g35610 Fragaria vesca HOM05D005027 ORTHO05D005978 2.3e-35 152.1 143 52.4
FAN15G3195 Fragaria x ananassa HOM05D005027 ORTHO05D005978 2.3e-35 152.1 143 52.4
Sabra06G0186600 Salix brachista HOM05D005027 ORTHO05D005978 2.3e-35 152.1 143 52.4
Psat0s1928g0120 Pisum sativum HOM05D005027 ORTHO05D005978 3.0e-35 151.8 143 51.7
Lalb_Chr08g0243061 Lupinus albus HOM05D005027 ORTHO05D005978 3.9e-35 151.4 143 52.4
Prupe.1G448400 Prunus persica HOM05D005027 ORTHO05D005978 3.9e-35 151.4 144 50.7
RcHm_v2.0_Chr6g0306201 Rosa chinensis HOM05D005027 ORTHO05D005978 3.9e-35 151.4 143 53.1
Eucgr.C02930 Eucalyptus grandis HOM05D005027 ORTHO05D005978 5.1e-35 151.0 143 51.7
Manes.16G075700 Manihot esculenta HOM05D005027 ORTHO05D005978 6.6e-35 150.6 143 52.4
Aqoxy7G01484 Aquilegia oxysepala HOM05D005027 ORTHO05D005978 8.6e-35 150.2 142 52.8
FAN20G3026 Fragaria x ananassa HOM05D005027 ORTHO05D005978 8.6e-35 150.2 143 51.7
HanXRQChr00c0025g0571121 Helianthus annuus HOM05D005027 ORTHO05D005978 8.6e-35 150.2 143 52.4
Medtr7g063800 Medicago truncatula HOM05D005027 ORTHO05D005978 8.6e-35 150.2 143 52.4
PGR044G2243 Punica granatum HOM05D005027 ORTHO05D005978 1.1e-34 149.8 143 52.4
CANSAT25G1983 Cannabis sativa HOM05D005027 ORTHO05D005978 1.5e-34 149.4 143 51.7
Ciclev10010609m.g Citrus clementina HOM05D005027 ORTHO05D005978 1.9e-34 149.1 143 51.0
Rhsim02G0178400 Rhododendron simsii HOM05D005027 ORTHO05D005978 1.9e-34 149.1 143 51.0
ECA233G5490 Erigeron canadensis HOM05D005027 ORTHO05D005978 3.3e-34 148.3 143 52.4
ECA248G1215 Erigeron canadensis HOM05D005027 ORTHO05D005978 3.3e-34 148.3 145 51.0
HanXRQChr02g0050571 Helianthus annuus HOM05D005027 ORTHO05D005978 3.3e-34 148.3 143 52.4
Lj1g0019414 Lotus japonicus HOM05D005027 ORTHO05D005978 5.6e-34 147.5 143 51.7
TAR624G0014 Trochodendron aralioides HOM05D005027 ORTHO05D005978 5.6e-34 147.5 143 50.3
Phvul.009G109700 Phaseolus vulgaris HOM05D005027 ORTHO05D005978 7.3e-34 147.1 143 51.0
AUR62009284 Chenopodium quinoa HOM05D005027 ORTHO05D005978 9.5e-34 146.7 143 49.0
Duzib168G0183 Durio zibethinus HOM05D005027 ORTHO05D005978 2.1e-33 145.6 143 50.3
Eucgr.C02932 Eucalyptus grandis HOM05D005027 ORTHO05D005978 2.1e-33 145.6 143 48.3
Lsat_1_v5_gn_1_46661 Lactuca sativa HOM05D005027 ORTHO05D005978 2.1e-33 145.6 143 51.7
PSO210G1252 Papaver somniferum HOM05D005027 ORTHO05D005978 2.1e-33 145.6 143 50.3
DCAR_004470 Daucus carota HOM05D005027 ORTHO05D005978 3.6e-33 144.8 143 50.3
QL12p041392 Quercus lobata HOM05D005027 ORTHO05D005978 3.6e-33 144.8 143 50.3
Nn8g39130 Nelumbo nucifera HOM05D005027 ORTHO05D005978 4.7e-33 144.4 143 50.3
CiPaw.07G204400 Carya illinoinensis HOM05D005027 ORTHO05D005978 6.2e-33 144.1 143 50.3
Gohir.D07G025900 Gossypium hirsutum HOM05D005027 ORTHO05D005978 6.2e-33 144.1 143 49.7
Gorai.001G027000 Gossypium raimondii HOM05D005027 ORTHO05D005978 6.2e-33 144.1 143 49.7
Lsat_1_v5_gn_6_23181 Lactuca sativa HOM05D005027 ORTHO05D005978 6.2e-33 144.1 143 51.0
arahy.Tifrunner.gnm1.ann1.4KPL6Q Arachis hypogaea HOM05D005027 ORTHO05D005978 8.1e-33 143.7 143 48.3
arahy.Tifrunner.gnm1.ann1.MD1Q75 Arachis hypogaea HOM05D005027 ORTHO05D005978 8.1e-33 143.7 143 48.3
AUR62039699 Chenopodium quinoa HOM05D005027 ORTHO05D005978 1.8e-32 142.5 143 48.3
AUR62044294 Chenopodium quinoa HOM05D005027 ORTHO05D005978 1.8e-32 142.5 143 48.3
TWI63G0812 Tripterygium wilfordii HOM05D005027 ORTHO05D005978 2.3e-32 142.1 143 49.7
TWI34G1114 Tripterygium wilfordii HOM05D005027 ORTHO05D005978 3.1e-32 141.7 143 49.7
Cpa.g.c24654.4 Carica papaya HOM05D005027 ORTHO05D005978 4.0e-32 141.4 143 49.7
Sc09g0009280 Simmondsia chinensis HOM05D005027 ORTHO05D005978 4.0e-32 141.4 143 46.9
Thecc.09G045100 Theobroma cacao HOM05D005027 ORTHO05D005978 4.0e-32 141.4 143 47.6
SEGI_00216 Sequoiadendron giganteum HOM05D005027 ORTHO05D005978 5.2e-32 141.0 143 49.7
Gohir.A07G022500 Gossypium hirsutum HOM05D005027 ORTHO05D005978 6.8e-32 140.6 143 49.0
Gohir.A06G092800 Gossypium hirsutum HOM05D005027 ORTHO05D005978 8.9e-32 140.2 143 49.7
Gohir.D06G092400 Gossypium hirsutum HOM05D005027 ORTHO05D005978 1.5e-31 139.4 143 49.0
Gorai.010G106400 Gossypium raimondii HOM05D005027 ORTHO05D005978 1.5e-31 139.4 143 49.0
SEGI_19583 Sequoiadendron giganteum HOM05D005027 ORTHO05D005978 2.0e-31 139.0 143 50.3
CDE02G4197 Ceratophyllum demersum HOM05D005027 ORTHO05D005978 2.6e-31 138.7 143 47.6
Cfa013364 Carpinus fangiana HOM05D005027 ORTHO05D005978 4.4e-31 137.9 143 49.0
Atru.chr3.767 Acer truncatum HOM05D005027 ORTHO05D005978 5.8e-31 137.5 143 46.9
COL.COLO4_20969 Corchorus olitorius HOM05D005027 ORTHO05D005978 7.5e-31 137.1 139 48.2
ATR0705G159 Amborella trichopoda HOM05D005027 ORTHO05D005978 1.3e-30 136.3 143 46.9
CiPaw.08G025700 Carya illinoinensis HOM05D005027 ORTHO05D005978 1.3e-30 136.3 143 47.6
Os01g0566500 Oryza sativa ssp. japonica HOM05D005027 ORTHO05D005978 1.3e-30 136.3 143 45.5
Os01g0746400 Oryza sativa ssp. japonica HOM05D005027 ORTHO05D005978 2.9e-30 135.2 143 45.5
unitig_46.g18188 Utricularia gibba HOM05D005027 ORTHO05D005978 2.9e-30 135.2 144 44.4
CDE08G1231 Ceratophyllum demersum HOM05D005027 ORTHO05D005978 4.9e-30 134.4 143 44.8
Haze_21886 Corylus avellana HOM05D005027 ORTHO05D005978 6.4e-30 134.0 135 48.9
HPP92_022983 Vanilla planifolia HOM05D005027 ORTHO05D005978 8.3e-30 133.7 143 44.8
Ciclev10008050m.g Citrus clementina HOM05D005027 ORTHO05D005978 1.1e-29 133.3 143 45.5
Thhalv10024788m.g Eutrema salsugineum HOM05D005027 ORTHO05D005978 1.1e-29 133.3 143 44.1
Sp7g30580 Schrenkiella parvula HOM05D005027 ORTHO05D005978 1.4e-29 132.9 143 44.1
Aa31sc497G20 Aethionema arabicum HOM05D005027 ORTHO05D005978 1.9e-29 132.5 143 43.4
BcaC09g52077 Brassica carinata HOM05D005027 ORTHO05D005978 3.2e-29 131.7 143 44.1
A01p05480 Brassica napus HOM05D005027 ORTHO05D005978 3.2e-29 131.7 143 44.1
C01p06080 Brassica napus HOM05D005027 ORTHO05D005978 3.2e-29 131.7 143 44.1
BolC1t00601H Brassica oleracea HOM05D005027 ORTHO05D005978 3.2e-29 131.7 143 44.1
AT4G32810 Arabidopsis thaliana HOM05D005027 ORTHO05D005978 4.1e-29 131.3 143 43.4
AL7G18920 Arabidopsis lyrata HOM05D005027 ORTHO05D005978 5.4e-29 131.0 143 43.4
CARHR240800 Cardamine hirsuta HOM05D005027 ORTHO05D005978 5.4e-29 131.0 143 44.1
Zm00001eb153000 Zea mays HOM05D005027 ORTHO05D005978 7.1e-29 130.6 143 44.1
Aqoxy1G03410 Aquilegia oxysepala HOM05D005027 ORTHO05D005978 2.1e-28 129.0 143 44.1
Aqoxy3G01972 Aquilegia oxysepala HOM05D005027 ORTHO05D005978 2.1e-28 129.0 143 44.1
Aqoxy1G03982 Aquilegia oxysepala HOM05D005027 ORTHO05D005978 2.7e-28 128.6 143 42.7
ATR0723G015 Amborella trichopoda HOM05D005027 ORTHO05D005978 3.5e-28 128.3 143 41.3
Aqoxy7G01483 Aquilegia oxysepala HOM05D005027 ORTHO05D005978 5.1e-27 124.4 143 42.7
SEGI_39574 Sequoiadendron giganteum HOM05D005027 ORTHO05D005978 5.1e-27 124.4 145 41.4
Carub.0007s0768 Capsella rubella HOM05D005027 ORTHO05D005978 1.5e-26 122.9 143 41.3
SEGI_19892 Sequoiadendron giganteum HOM05D005027 ORTHO05D005978 4.3e-26 121.3 145 40.0
BraA01t00521Z Brassica rapa HOM05D005027 ORTHO05D005978 1.6e-25 119.4 175 36.0
SEGI_39055 Sequoiadendron giganteum HOM05D005027 ORTHO05D005978 2.8e-25 118.6 144 40.3
PGSC0003DMG400002234 Solanum tuberosum HOM05D005027 ORTHO05D005978 3.1e-24 115.2 115 51.3
SGA_v2.0_scaffold103G29990 Striga asiatica HOM05D005027 ORTHO05D005978 2.2e-22 109.0 129 43.4
Pp3c6_21520 Physcomitrium patens HOM05D005027 ORTHO05D005978 3.2e-21 105.1 143 39.2
AagrBONN_evm.TU.Sc2ySwM_344.4691 Anthoceros agrestis HOM05D005027 ORTHO05D005978 5.4e-21 104.4 144 36.1
Ah.16g105780 Amaranthus hybridus HOM05D005027 ORTHO05D005978 2.1e-20 102.4 103 48.5
Dinv27900 Davidia involucrata HOM05D005027 ORTHO05D005978 8.1e-17 90.5 51 76.5
SMO147G0156 Selaginella moellendorffii HOM05D005027 ORTHO05D005978 1.1e-16 90.1 142 32.4
Lj7A701T19 Lonicera japonica HOM05D005027 ORTHO05D005978 4.0e-16 88.2 51 72.5
Actinidia30277 Actinidia chinensis HOM05D005027 ORTHO05D005978 5.3e-16 87.8 51 72.5
EL10Ac2g04019 Beta vulgaris HOM05D005027 ORTHO05D005978 5.3e-16 87.8 46 76.1
Cc08_g09530 Coffea canephora HOM05D005027 ORTHO05D005978 5.3e-16 87.8 46 76.1
SalBow4G2697 Salvia bowleyana HOM05D005027 ORTHO05D005978 1.2e-15 86.7 46 76.1
Cpa.g.c24654.3 Carica papaya HOM05D005027 ORTHO05D005978 1.7e-14 82.8 60 56.7
THA.LOC104820078 Tarenaya hassleriana HOM05D005027 ORTHO05D005978 2.9e-14 82.0 51 64.7
ECA248G1482 Erigeron canadensis HOM05D005027 ORTHO05D005978 9.3e-13 77.0 58 63.8
SEGI_36004 Sequoiadendron giganteum HOM05D005027 ORTHO05D005978 3.9e-11 71.6 59 47.5
SEGI_37641 Sequoiadendron giganteum HOM05D005027 ORTHO05D005978 1.1e-10 70.1 61 45.9
Aqoxy4G01785 Aquilegia oxysepala HOM05D001482 ORTHO05D001499 1.2e-07 60.1 44 52.3


User provided reference genes

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