Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 5.3e-165 584.3 303 100.0
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 1.6e-158 562.8 303 95.4
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 2.4e-157 558.9 303 94.7
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 9.6e-151 537.0 297 92.9
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 6.0e-145 517.7 303 88.8
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 1.5e-143 513.1 300 88.3
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 6.7e-136 487.6 299 79.9
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 9.1e-133 477.2 299 76.9
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 3.4e-132 475.3 301 76.7
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 5.0e-131 471.5 301 77.1
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.1e-130 470.3 300 79.0
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 1.4e-130 469.9 300 77.7
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 4.6e-129 464.9 301 76.7
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 4.6e-129 464.9 300 76.7
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 1.8e-128 463.0 300 76.7
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 3.9e-128 461.8 301 73.4
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 5.1e-128 461.5 300 76.0
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 5.1e-128 461.5 301 73.4
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 6.7e-128 461.1 298 76.2
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 8.8e-128 460.7 301 73.4
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 1.1e-127 460.3 301 73.4
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.5e-127 459.9 301 72.8
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 2.0e-127 459.5 300 75.3
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 3.3e-127 458.8 298 74.2
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 7.4e-127 457.6 300 76.7
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 7.4e-127 457.6 298 75.8
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 7.4e-127 457.6 300 76.3
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 2.8e-126 455.7 301 75.1
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 3.7e-126 455.3 299 73.6
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 1.4e-125 453.4 302 72.8
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 6.9e-125 451.1 300 75.3
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 1.5e-124 449.9 303 73.9
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 4.5e-124 448.4 299 72.6
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 7.7e-124 447.6 298 72.8
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 1.0e-123 447.2 301 75.4
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 1.3e-123 446.8 301 74.4
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 1.3e-123 446.8 298 75.5
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 1.3e-123 446.8 267 80.9
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 1.7e-123 446.4 298 72.1
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 2.9e-123 445.7 299 72.6
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 5.0e-123 444.9 299 73.2
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 5.0e-123 444.9 299 73.2
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 6.5e-123 444.5 299 70.6
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.1e-122 443.7 299 72.2
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.1e-122 443.7 299 72.6
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 2.5e-122 442.6 299 72.6
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 2.5e-122 442.6 300 70.7
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 5.5e-122 441.4 299 72.9
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 9.4e-122 440.7 335 68.7
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 2.1e-121 439.5 302 72.8
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 2.7e-121 439.1 302 71.5
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 2.7e-121 439.1 302 74.5
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 3.6e-121 438.7 301 72.4
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 3.6e-121 438.7 302 73.5
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 1.8e-120 436.4 299 71.2
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 3.9e-120 435.3 304 73.0
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 6.7e-120 434.5 300 73.0
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 2.0e-119 433.0 337 66.5
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 2.6e-119 432.6 298 72.1
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 3.3e-119 432.2 299 71.9
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.3e-118 430.3 303 71.3
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 1.7e-118 429.9 303 71.3
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 1.7e-118 429.9 297 70.0
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 2.2e-118 429.5 306 72.2
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 2.2e-118 429.5 305 72.1
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 2.8e-118 429.1 305 71.8
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 2.8e-118 429.1 299 70.6
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 8.2e-118 427.6 300 71.3
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 9.1e-117 424.1 380 58.7
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 1.6e-116 423.3 348 61.8
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 1.6e-116 423.3 299 70.2
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 2.0e-116 422.9 299 69.9
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 7.7e-116 421.0 300 68.0
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 7.7e-116 421.0 303 70.0
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 1.7e-115 419.9 299 70.2
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 5.0e-115 418.3 296 69.6
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 8.5e-115 417.5 300 67.3
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 1.1e-114 417.2 296 68.6
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 1.5e-114 416.8 299 67.6
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 2.5e-114 416.0 289 70.6
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 4.2e-114 415.2 300 67.0
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 4.2e-114 415.2 331 66.2
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 5.5e-114 414.8 300 67.3
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 9.4e-114 414.1 300 67.3
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 1.2e-113 413.7 297 69.0
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 1.2e-113 413.7 299 68.2
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 1.6e-113 413.3 300 67.0
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 2.1e-113 412.9 300 66.7
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 6.1e-113 411.4 300 66.0
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 6.1e-113 411.4 289 69.9
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 6.1e-113 411.4 301 69.8
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 1.0e-112 410.6 299 66.6
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 1.4e-112 410.2 300 66.0
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 1.8e-112 409.8 301 67.1
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 2.3e-112 409.5 304 68.8
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 3.0e-112 409.1 300 66.0
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 3.0e-112 409.1 298 69.8
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 4.0e-112 408.7 299 67.2
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 2.6e-111 406.0 260 78.8
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 2.6e-111 406.0 297 66.3
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 3.3e-111 405.6 305 65.2
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 3.3e-111 405.6 302 68.2
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 4.4e-111 405.2 296 67.9
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 1.3e-110 403.7 282 68.4
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 1.7e-110 403.3 297 67.7
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 1.7e-110 403.3 299 68.9
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 1.7e-110 403.3 287 68.6
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 1.7e-110 403.3 301 66.4
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 2.8e-110 402.5 297 67.3
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 3.7e-110 402.1 300 67.3
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 1.1e-109 400.6 337 62.6
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 1.4e-109 400.2 265 71.3
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 2.4e-109 399.4 294 67.0
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 4.1e-109 398.7 307 67.4
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 7.0e-109 397.9 302 66.9
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.2e-108 397.1 300 67.3
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.0e-108 396.4 258 72.9
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 1.0e-107 394.0 275 70.9
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 1.7e-107 393.3 306 64.1
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 8.5e-107 391.0 301 66.1
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 3.6e-105 385.6 295 66.8
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 7.5e-103 377.9 265 67.9
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 7.0e-101 371.3 305 61.6
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 1.2e-100 370.5 304 63.2
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.0e-99 367.5 300 63.0
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 3.8e-99 365.5 215 83.7
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 8.6e-99 364.4 288 65.3
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 1.2e-97 360.5 305 63.0
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 1.2e-89 334.0 266 62.4
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 1.0e-83 314.3 279 58.8
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 3.9e-83 312.4 282 55.0
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 8.6e-83 311.2 292 53.8
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 9.5e-82 307.8 308 55.2
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 3.6e-81 305.8 278 56.5
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 3.6e-81 305.8 292 56.5
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 6.2e-81 305.1 231 69.3
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 6.8e-80 301.6 299 53.2
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.2e-79 300.8 281 54.1
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 2.0e-79 300.1 275 57.5
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 7.5e-79 298.1 273 55.7
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 4.1e-77 292.4 278 52.5
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 9.2e-77 291.2 278 52.2
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 4.4e-71 272.3 249 58.2
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 1.9e-66 256.9 202 63.4
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 6.2e-65 251.9 148 78.4
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 3.4e-63 246.1 196 64.3
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 7.6e-63 245.0 233 52.4
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 2.1e-60 236.9 324 46.9
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 4.6e-60 235.7 188 62.8
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 1.5e-58 230.7 183 61.7
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 4.7e-57 225.7 220 55.9
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 2.6e-55 219.9 150 71.3
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 3.4e-55 219.5 209 52.2
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 2.2e-54 216.9 152 71.1
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 1.9e-53 213.8 220 51.4
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 7.9e-44 181.8 283 36.7
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 2.8e-33 146.7 278 31.7
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 1.2e-28 131.3 105 65.7
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 1.2e-28 131.3 330 28.8
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 2.6e-23 113.6 209 33.0
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 1.4e-21 107.8 114 50.0
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 5.5e-21 105.9 76 69.7
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 4.6e-20 102.8 316 27.5
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 1.9e-18 97.4 119 47.1
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 1.7e-14 84.3 284 27.8
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 4.7e-12 76.3 185 35.1
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 6.3e-09 65.9 56 50.0
unitig_747.g21459 Utricularia gibba HOM05D001952 ORTHO05D005047 3.1e-08 63.5 39 74.4


User provided reference genes

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