Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G399.4 Capsicum annuum HOM05D004120 ORTHO05D004951 3.8e-42 174.5 92 100.0
CAN.G1216.15 Capsicum annuum HOM05D004120 ORTHO05D004951 1.5e-17 92.8 55 85.5
Solyc08g005010.4 Solanum lycopersicum HOM05D004120 ORTHO05D004951 1.5e-17 92.8 55 85.5
Sopen08g001030 Solanum pennellii HOM05D004120 ORTHO05D004951 1.5e-17 92.8 55 85.5
PGSC0003DMG402001159 Solanum tuberosum HOM05D004120 ORTHO05D004951 1.9e-17 92.4 55 83.6
Nitab4.5_0000804g0170 Nicotiana tabacum HOM05D004120 ORTHO05D004951 1.6e-16 89.4 55 81.8
Nitab4.5_0002539g0020 Nicotiana tabacum HOM05D004120 ORTHO05D004951 1.6e-16 89.4 55 81.8
Eucgr.D02191 Eucalyptus grandis HOM05D004120 ORTHO05D004951 2.8e-16 88.6 55 80.0
Actinidia28172 Actinidia chinensis HOM05D004120 ORTHO05D004951 3.6e-16 88.2 55 80.0
ClCG10G001730 Citrullus lanatus HOM05D004120 ORTHO05D004951 3.6e-16 88.2 64 71.9
MSTRG.13757 Avicennia marina HOM05D004120 ORTHO05D004951 6.1e-16 87.4 55 78.2
Nn6g33597 Nelumbo nucifera HOM05D004120 ORTHO05D004951 8.0e-16 87.0 55 78.2
Peaxi162Scf00045g00028 Petunia axillaris HOM05D004120 ORTHO05D004951 1.0e-15 86.7 55 78.2
QL12p005624 Quercus lobata HOM05D004120 ORTHO05D004951 1.0e-15 86.7 55 78.2
A03p50800 Brassica napus HOM05D004120 ORTHO05D004951 1.4e-15 86.3 55 76.4
C07p49190 Brassica napus HOM05D004120 ORTHO05D004951 1.4e-15 86.3 55 72.7
BolC7t45429H Brassica oleracea HOM05D004120 ORTHO05D004951 1.4e-15 86.3 55 72.7
BraA03t14169Z Brassica rapa HOM05D004120 ORTHO05D004951 1.4e-15 86.3 55 76.4
Aqoxy3G02384 Aquilegia oxysepala HOM05D004120 ORTHO05D004951 1.8e-15 85.9 55 78.2
COL.COLO4_17048 Corchorus olitorius HOM05D004120 ORTHO05D004951 1.8e-15 85.9 55 76.4
Migut.E00930 Erythranthe guttata HOM05D004120 ORTHO05D004951 1.8e-15 85.9 55 78.2
Glyma.01G198500 Glycine max HOM05D004120 ORTHO05D004951 1.8e-15 85.9 55 76.4
Glyma.11G043400 Glycine max HOM05D004120 ORTHO05D004951 1.8e-15 85.9 55 76.4
PGR031G2717 Punica granatum HOM05D004120 ORTHO05D004951 1.8e-15 85.9 55 76.4
Cpa.g.sc239.7 Carica papaya HOM05D004120 ORTHO05D004951 2.3e-15 85.5 55 76.4
Ciclev10031866m.g Citrus clementina HOM05D004120 ORTHO05D004951 2.3e-15 85.5 55 76.4
Dinv25212 Davidia involucrata HOM05D004120 ORTHO05D004951 2.3e-15 85.5 55 76.4
Duzib084G1060 Durio zibethinus HOM05D004120 ORTHO05D004951 2.3e-15 85.5 55 76.4
TAR629G2715 Trochodendron aralioides HOM05D004120 ORTHO05D004951 2.3e-15 85.5 55 76.4
GSVIVG01013166001 Vitis vinifera HOM05D004120 ORTHO05D004951 2.3e-15 85.5 78 60.3
AUR62007285 Chenopodium quinoa HOM05D004120 ORTHO05D004951 3.0e-15 85.1 55 78.2
AUR62018721 Chenopodium quinoa HOM05D004120 ORTHO05D004951 3.0e-15 85.1 55 78.2
HanXRQChr03g0084021 Helianthus annuus HOM05D004120 ORTHO05D004951 3.0e-15 85.1 55 76.4
Hund14402 Selenicereus undatus HOM05D004120 ORTHO05D004951 3.0e-15 85.1 55 78.2
Oeu028027.1 Olea europaea HOM05D004120 ORTHO05D004951 4.0e-15 84.7 55 74.5
Sed0006792 Sechium edule HOM05D004120 ORTHO05D004951 4.0e-15 84.7 55 76.4
arahy.Tifrunner.gnm1.ann1.482M5A Arachis hypogaea HOM05D004120 ORTHO05D004951 5.2e-15 84.3 55 74.5
arahy.Tifrunner.gnm1.ann1.G7H05W Arachis hypogaea HOM05D004120 ORTHO05D004951 5.2e-15 84.3 55 74.5
CANSAT21G2618 Cannabis sativa HOM05D004120 ORTHO05D004951 5.2e-15 84.3 55 74.5
Nn1g00518 Nelumbo nucifera HOM05D004120 ORTHO05D004951 5.2e-15 84.3 55 76.4
PSO063G1634 Papaver somniferum HOM05D004120 ORTHO05D004951 5.2e-15 84.3 55 76.4
PSO782G3668 Papaver somniferum HOM05D004120 ORTHO05D004951 5.2e-15 84.3 55 76.4
Thecc.03G228600 Theobroma cacao HOM05D004120 ORTHO05D004951 5.2e-15 84.3 55 76.4
Atru.chr6.1717 Acer truncatum HOM05D004120 ORTHO05D004951 6.8e-15 84.0 55 72.7
BcaNung00052 Brassica carinata HOM05D004120 ORTHO05D004951 6.8e-15 84.0 55 74.5
CiPaw.11G092700 Carya illinoinensis HOM05D004120 ORTHO05D004951 6.8e-15 84.0 55 74.5
DCAR_008274 Daucus carota HOM05D004120 ORTHO05D004951 6.8e-15 84.0 55 76.4
Lsat_1_v5_gn_6_79560 Lactuca sativa HOM05D004120 ORTHO05D004951 6.8e-15 84.0 55 74.5
Lj2g0014948 Lotus japonicus HOM05D004120 ORTHO05D004951 6.8e-15 84.0 55 72.7
MD00G1220600 Malus domestica HOM05D004120 ORTHO05D004951 6.8e-15 84.0 55 74.5
MD06G1033000 Malus domestica HOM05D004120 ORTHO05D004951 6.8e-15 84.0 55 74.5
Phvul.002G007300 Phaseolus vulgaris HOM05D004120 ORTHO05D004951 6.8e-15 84.0 55 74.5
VMungo1215G0016 Vigna mungo HOM05D004120 ORTHO05D004951 6.8e-15 84.0 55 74.5
CSS0046330 Camellia sinensis var. sinensis HOM05D004120 ORTHO05D004951 8.8e-15 83.6 55 76.4
Carub.0007s2352 Capsella rubella HOM05D004120 ORTHO05D004951 8.8e-15 83.6 55 74.5
CARHR224560 Cardamine hirsuta HOM05D004120 ORTHO05D004951 8.8e-15 83.6 55 74.5
CDE03G0015 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 8.8e-15 83.6 55 74.5
Duzib205G1837 Durio zibethinus HOM05D004120 ORTHO05D004951 8.8e-15 83.6 55 74.5
Thhalv10025287m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 8.8e-15 83.6 55 72.7
Gohir.A08G156900 Gossypium hirsutum HOM05D004120 ORTHO05D004951 8.8e-15 83.6 55 76.4
Gohir.D08G177300 Gossypium hirsutum HOM05D004120 ORTHO05D004951 8.8e-15 83.6 55 76.4
Hma1.2p1_0585F.1_g183700 Hydrangea macrophylla HOM05D004120 ORTHO05D004951 8.8e-15 83.6 55 74.5
Rhsim11G0014500 Rhododendron simsii HOM05D004120 ORTHO05D004951 8.8e-15 83.6 55 74.5
Aa31LG6G560 Aethionema arabicum HOM05D004120 ORTHO05D004951 1.2e-14 83.2 55 72.7
Cc08_g02620 Coffea canephora HOM05D004120 ORTHO05D004951 1.2e-14 83.2 55 74.5
MELO3C013859.2 Cucumis melo HOM05D004120 ORTHO05D004951 1.2e-14 83.2 64 67.2
CsaV3_3G001840 Cucumis sativus L. HOM05D004120 ORTHO05D004951 1.2e-14 83.2 64 67.2
Oeu053047.1 Olea europaea HOM05D004120 ORTHO05D004951 1.2e-14 83.2 55 74.5
Sabra01G0111800 Salix brachista HOM05D004120 ORTHO05D004951 1.2e-14 83.2 55 74.5
EL10Ac5g12129 Beta vulgaris HOM05D004120 ORTHO05D004951 1.5e-14 82.8 55 74.5
ECA240G4620 Erigeron canadensis HOM05D004120 ORTHO05D004951 1.5e-14 82.8 55 72.7
Gorai.004G185700 Gossypium raimondii HOM05D004120 ORTHO05D004951 1.5e-14 82.8 55 74.5
AL7G36690 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 2.0e-14 82.4 55 72.7
AT4G17840 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 2.0e-14 82.4 55 72.7
arahy.Tifrunner.gnm1.ann1.7CR4HZ Arachis hypogaea HOM05D004120 ORTHO05D004951 2.0e-14 82.4 54 72.2
arahy.Tifrunner.gnm1.ann1.K2V32T Arachis hypogaea HOM05D004120 ORTHO05D004951 2.0e-14 82.4 54 72.2
Dinv28953 Davidia involucrata HOM05D004120 ORTHO05D004951 2.0e-14 82.4 55 72.7
FvH4_5g21880 Fragaria vesca HOM05D004120 ORTHO05D004951 2.0e-14 82.4 55 72.7
FAN18G3415 Fragaria x ananassa HOM05D004120 ORTHO05D004951 2.0e-14 82.4 55 72.7
ATR0049G040 Amborella trichopoda HOM05D004120 ORTHO05D004951 2.6e-14 82.0 55 74.5
THA.LOC104807951 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 2.6e-14 82.0 58 70.7
CiPaw.12G063200 Carya illinoinensis HOM05D004120 ORTHO05D004951 3.4e-14 81.6 55 72.7
RcHm_v2.0_Chr7g0209431 Rosa chinensis HOM05D004120 ORTHO05D004951 3.4e-14 81.6 55 72.7
THA.LOC104798329 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 3.4e-14 81.6 55 72.7
vmacro00332 Vaccinium macrocarpon HOM05D004120 ORTHO05D004951 3.4e-14 81.6 55 72.7
arahy.Tifrunner.gnm1.ann1.JI8VIY Arachis hypogaea HOM05D004120 ORTHO05D021518 4.4e-14 81.3 64 62.5
FAN04G1856 Fragaria x ananassa HOM05D004120 ORTHO05D004951 4.4e-14 81.3 55 72.7
Haze_08240 Corylus avellana HOM05D004120 ORTHO05D004951 5.7e-14 80.9 55 69.1
Medtr5g014430 Medicago truncatula HOM05D004120 ORTHO05D004951 5.7e-14 80.9 55 69.1
TWI81G0459 Tripterygium wilfordii HOM05D004120 ORTHO05D004951 5.7e-14 80.9 55 70.9
Cfa012429 Carpinus fangiana HOM05D004120 ORTHO05D004951 7.5e-14 80.5 55 69.1
Ca_24652_v3 Cicer arietinum L. HOM05D004120 ORTHO05D004951 7.5e-14 80.5 55 69.1
Psat2g173200 Pisum sativum HOM05D004120 ORTHO05D004951 7.5e-14 80.5 55 69.1
Potri.001G143400 Populus trichocarpa HOM05D004120 ORTHO05D004951 7.5e-14 80.5 55 72.7
BcaC09g51598 Brassica carinata HOM05D004120 ORTHO05D004951 9.8e-14 80.1 55 70.9
A01p09890 Brassica napus HOM05D004120 ORTHO05D004951 9.8e-14 80.1 55 70.9
C01p11590 Brassica napus HOM05D004120 ORTHO05D004951 9.8e-14 80.1 55 70.9
BolC1t01127H Brassica oleracea HOM05D004120 ORTHO05D004951 9.8e-14 80.1 55 70.9
BraA01t00933Z Brassica rapa HOM05D004120 ORTHO05D004951 9.8e-14 80.1 55 70.9
Sp7g16270 Schrenkiella parvula HOM05D004120 ORTHO05D004951 9.8e-14 80.1 55 69.1
Lalb_Chr05g0213941 Lupinus albus HOM05D004120 ORTHO05D004951 1.3e-13 79.7 55 70.9
HPP92_022140 Vanilla planifolia HOM05D004120 ORTHO05D004951 1.3e-13 79.7 55 72.7
HPP92_022143 Vanilla planifolia HOM05D004120 ORTHO05D004951 1.3e-13 79.7 55 72.7
Sc01g0007480 Simmondsia chinensis HOM05D004120 ORTHO05D004951 1.7e-13 79.3 55 70.9
Lalb_Chr16g0379111 Lupinus albus HOM05D004120 ORTHO05D004951 2.2e-13 79.0 55 69.1
Prupe.5G038500 Prunus persica HOM05D004120 ORTHO05D004951 2.2e-13 79.0 55 70.9
SGA_v2.0_scaffold54G19447 Striga asiatica HOM05D004120 ORTHO05D004951 2.8e-13 78.6 55 67.3
TPR.G7833 Trifolium pratense HOM05D004120 ORTHO05D004951 6.3e-13 77.4 55 67.3
arahy.Tifrunner.gnm1.ann1.NR0HVE Arachis hypogaea HOM05D004120 ORTHO05D021518 1.4e-12 76.3 64 60.9
arahy.Tifrunner.gnm1.ann1.WRTU1C Arachis hypogaea HOM05D004120 ORTHO05D004951 1.4e-12 76.3 54 68.5
Zm00001eb426630 Zea mays HOM05D004120 ORTHO05D004951 2.4e-12 75.5 55 61.8
BcaB02g09465 Brassica carinata HOM05D004120 ORTHO05D004951 4.1e-12 74.7 58 65.5
BcaC02g11630 Brassica carinata HOM05D004120 ORTHO05D004951 4.1e-12 74.7 58 65.5
A05p10510 Brassica napus HOM05D004120 ORTHO05D004951 4.1e-12 74.7 58 65.5
C04p12920 Brassica napus HOM05D004120 ORTHO05D004951 4.1e-12 74.7 58 65.5
BraA05t19989Z Brassica rapa HOM05D004120 ORTHO05D004951 4.1e-12 74.7 58 65.5
Sp4g17480 Schrenkiella parvula HOM05D004120 ORTHO05D004951 4.1e-12 74.7 58 65.5
arahy.Tifrunner.gnm1.ann1.3C7WBJ Arachis hypogaea HOM05D004120 ORTHO05D004951 5.4e-12 74.3 53 67.9
BolC4t22936H Brassica oleracea HOM05D004120 ORTHO05D004951 5.4e-12 74.3 58 63.8
Os03g0100030 Oryza sativa ssp. japonica HOM05D004120 ORTHO05D004951 7.0e-12 73.9 55 61.8
unitig_699.g19781 Utricularia gibba HOM05D004120 ORTHO05D004951 7.0e-12 73.9 49 73.5
arahy.Tifrunner.gnm1.ann1.RCE8PR Arachis hypogaea HOM05D004120 ORTHO05D004951 9.2e-12 73.6 54 68.5
unitig_52.g17209 Utricularia gibba HOM05D004120 ORTHO05D004951 9.2e-12 73.6 49 71.4
AL4G31300 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 1.2e-11 73.2 58 63.8
AL716U10010 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 1.2e-11 73.2 58 63.8
Thhalv10016805m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 1.6e-11 72.8 58 63.8
Carub.0004s1696 Capsella rubella HOM05D004120 ORTHO05D004951 2.0e-11 72.4 58 63.8
CARHR129420 Cardamine hirsuta HOM05D004120 ORTHO05D004951 2.0e-11 72.4 58 63.8
Manes.17G013200 Manihot esculenta HOM05D004120 ORTHO05D004951 2.7e-11 72.0 55 67.3
AT2G35260 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 3.5e-11 71.6 58 62.1
ECA246G0968 Erigeron canadensis HOM05D004120 ORTHO05D004951 3.5e-11 71.6 55 60.0
SEGI_24472 Sequoiadendron giganteum HOM05D004120 ORTHO05D004951 3.5e-11 71.6 55 63.6
BcaC01g05734 Brassica carinata HOM05D004120 ORTHO05D004951 5.9e-11 70.9 58 62.1
A03p19500 Brassica napus HOM05D004120 ORTHO05D004951 5.9e-11 70.9 58 62.1
C03p22720 Brassica napus HOM05D004120 ORTHO05D004951 5.9e-11 70.9 58 62.1
BolC3t14671H Brassica oleracea HOM05D004120 ORTHO05D004951 5.9e-11 70.9 58 62.1
BraA03t11203Z Brassica rapa HOM05D004120 ORTHO05D004951 5.9e-11 70.9 58 62.1
Aa31LG9G15290 Aethionema arabicum HOM05D004120 ORTHO05D004951 2.3e-10 68.9 54 64.8
Pp3c10_10980 Physcomitrium patens HOM05D004120 ORTHO05D004951 1.9e-09 65.9 55 58.2
Pp3c14_25270 Physcomitrium patens HOM05D004120 ORTHO05D004951 2.5e-09 65.5 55 58.2
Mapoly0008s0099 Marchantia polymorpha HOM05D004120 ORTHO05D004951 1.8e-07 59.3 53 50.9
unitig_744.g24311 Utricularia gibba HOM05D004120 ORTHO05D004951 5.2e-07 57.8 49 61.2
FAN13G1981 Fragaria x ananassa HOM05D004120 ORTHO05D004951 6.8e-07 57.4 35 77.1
FAN08G2335 Fragaria x ananassa HOM05D004120 ORTHO05D004951 2.0e-06 55.8 35 74.3
SMO356G0344 Selaginella moellendorffii HOM05D004120 ORTHO05D004951 2.6e-06 55.5 55 41.8
Ah.12g054990 Amaranthus hybridus HOM05D004120 ORTHO05D004951 3.4e-06 55.1 55 58.2


User provided reference genes

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