Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G399.3 Capsicum annuum HOM05D004971 ORTHO05D006289 1.0e-148 530.0 257 100.0
Sopen05g028390 Solanum pennellii HOM05D004971 ORTHO05D006289 4.5e-125 451.4 263 85.2
Solyc05g050000.3 Solanum lycopersicum HOM05D004971 ORTHO05D006289 7.7e-125 450.7 263 85.2
PGSC0003DMG400021659 Solanum tuberosum HOM05D004971 ORTHO05D006289 7.7e-125 450.7 255 87.1
Nitab4.5_0000066g0130 Nicotiana tabacum HOM05D004971 ORTHO05D006289 3.7e-111 405.2 263 75.3
Nitab4.5_0003331g0010 Nicotiana tabacum HOM05D004971 ORTHO05D006289 6.3e-111 404.4 263 74.5
Peaxi162Scf00539g00614 Petunia axillaris HOM05D004971 ORTHO05D006289 1.7e-100 369.8 253 74.7
MSTRG.19566 Avicennia marina HOM05D004971 ORTHO05D006289 1.5e-88 330.1 264 61.4
Oeu000366.2 Olea europaea HOM05D004971 ORTHO05D006289 4.4e-88 328.6 252 63.9
Cc06_g10130 Coffea canephora HOM05D004971 ORTHO05D006289 6.4e-87 324.7 253 63.6
Dinv41645 Davidia involucrata HOM05D004971 ORTHO05D006289 1.4e-86 323.6 264 59.5
Migut.J01131 Erythranthe guttata HOM05D004971 ORTHO05D006289 4.1e-86 322.0 257 61.9
CSS0031404 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 1.3e-84 317.0 264 58.7
SGA_v2.0_scaffold20G09148 Striga asiatica HOM05D004971 ORTHO05D006289 1.7e-84 316.6 259 60.6
SGA_v2.0_scaffold22G09903 Striga asiatica HOM05D004971 ORTHO05D006289 1.7e-84 316.6 259 60.2
Rhsim03G0239000 Rhododendron simsii HOM05D004971 ORTHO05D006289 1.1e-83 313.9 262 58.0
HanXRQChr09g0239411 Helianthus annuus HOM05D004971 ORTHO05D006289 3.6e-82 308.9 259 59.5
Lj4g0001585 Lotus japonicus HOM05D004971 ORTHO05D006289 1.1e-81 307.4 247 60.7
ECA240G1764 Erigeron canadensis HOM05D004971 ORTHO05D006289 1.8e-81 306.6 258 58.1
unitig_748.g8739 Utricularia gibba HOM05D004971 ORTHO05D006289 3.4e-80 302.4 256 58.2
Oeu017816.1 Olea europaea HOM05D004971 ORTHO05D006289 4.4e-80 302.0 240 61.7
THA.LOC104811095 Tarenaya hassleriana HOM05D004971 ORTHO05D006289 5.8e-80 301.6 247 60.7
CARHR256940 Cardamine hirsuta HOM05D004971 ORTHO05D006289 7.5e-80 301.2 241 60.6
GSVIVG01015340001 Vitis vinifera HOM05D004971 ORTHO05D006289 7.5e-80 301.2 255 58.4
Thecc.09G104800 Theobroma cacao HOM05D004971 ORTHO05D006289 9.8e-80 300.8 249 58.6
Lalb_Chr05g0223101 Lupinus albus HOM05D004971 ORTHO05D006289 1.3e-79 300.4 255 58.0
Lsat_1_v5_gn_7_41360 Lactuca sativa HOM05D004971 ORTHO05D006289 1.7e-79 300.1 253 59.3
CiPaw.03G227700 Carya illinoinensis HOM05D004971 ORTHO05D006289 2.2e-79 299.7 265 58.5
Thhalv10014188m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 2.9e-79 299.3 241 60.6
RcHm_v2.0_Chr2g0091361 Rosa chinensis HOM05D004971 ORTHO05D006289 2.9e-79 299.3 261 59.0
PGR102G0147 Punica granatum HOM05D004971 ORTHO05D006289 4.9e-79 298.5 251 59.0
COL.COLO4_34800 Corchorus olitorius HOM05D004971 ORTHO05D006289 6.4e-79 298.1 244 61.5
Glyma.08G035500 Glycine max HOM05D004971 ORTHO05D006289 8.3e-79 297.7 252 59.9
CANSAT56G2306 Cannabis sativa HOM05D004971 ORTHO05D006289 1.1e-78 297.4 251 59.0
Eucgr.C03795 Eucalyptus grandis HOM05D004971 ORTHO05D006289 3.2e-78 295.8 252 57.9
AT5G51130 Arabidopsis thaliana HOM05D004971 ORTHO05D006289 9.2e-78 294.3 247 59.1
Prupe.7G224700 Prunus persica HOM05D004971 ORTHO05D006289 9.2e-78 294.3 248 58.1
Carub.0008s1117 Capsella rubella HOM05D004971 ORTHO05D006289 2.1e-77 293.1 247 58.3
VMungo0251G3379 Vigna mungo HOM05D004971 ORTHO05D006289 2.1e-77 293.1 253 58.1
AL8G25390 Arabidopsis lyrata HOM05D004971 ORTHO05D006289 2.7e-77 292.7 252 60.3
CANSAT56G1645 Cannabis sativa HOM05D004971 ORTHO05D006289 6.0e-77 291.6 251 58.2
MD15G1192600 Malus domestica HOM05D004971 ORTHO05D006289 1.0e-76 290.8 240 62.1
Phvul.002G310900 Phaseolus vulgaris HOM05D004971 ORTHO05D006289 1.0e-76 290.8 252 58.3
QL01p004043 Quercus lobata HOM05D004971 ORTHO05D006289 1.0e-76 290.8 251 59.4
BcaC01g06098 Brassica carinata HOM05D004971 ORTHO05D006289 1.3e-76 290.4 241 58.5
BolC3t14306H Brassica oleracea HOM05D004971 ORTHO05D006289 1.3e-76 290.4 241 58.5
HanXRQChr03g0061421 Helianthus annuus HOM05D004971 ORTHO05D006289 1.3e-76 290.4 247 57.9
Sp6g13340 Schrenkiella parvula HOM05D004971 ORTHO05D006289 1.3e-76 290.4 249 58.2
BcaC01g06076 Brassica carinata HOM05D004971 ORTHO05D006289 2.3e-76 289.7 242 60.3
FAN19G1252 Fragaria x ananassa HOM05D001382 ORTHO05D001266 2.3e-76 289.7 259 58.7
BcaB05g24018 Brassica carinata HOM05D004971 ORTHO05D006289 3.0e-76 289.3 240 58.8
C03p19180 Brassica napus HOM05D004971 ORTHO05D006289 3.0e-76 289.3 241 58.1
A02p12480 Brassica napus HOM05D004971 ORTHO05D006289 3.9e-76 288.9 248 58.1
BraA02t06311Z Brassica rapa HOM05D004971 ORTHO05D006289 3.9e-76 288.9 248 58.1
FvH4_1g05710 Fragaria vesca HOM05D004971 ORTHO05D006289 5.1e-76 288.5 262 58.0
FAN26G3039 Fragaria x ananassa HOM05D001382 ORTHO05D001266 8.6e-76 287.7 262 57.3
AUR62021639 Chenopodium quinoa HOM05D004971 ORTHO05D006289 1.1e-75 287.3 263 55.9
Gohir.D07G007800 Gossypium hirsutum HOM05D004971 ORTHO05D006289 1.1e-75 287.3 249 57.4
Gorai.001G007500 Gossypium raimondii HOM05D004971 ORTHO05D006289 1.1e-75 287.3 249 57.4
BcaC03g14623 Brassica carinata HOM05D004971 ORTHO05D006289 1.5e-75 287.0 246 57.7
BolC2t08195H Brassica oleracea HOM05D004971 ORTHO05D006289 1.5e-75 287.0 246 57.7
Medtr8g102950 Medicago truncatula HOM05D004971 ORTHO05D006289 1.5e-75 287.0 254 56.3
Hund26242 Selenicereus undatus HOM05D004971 ORTHO05D006289 1.5e-75 287.0 246 56.1
TPR.G23453 Trifolium pratense HOM05D004971 ORTHO05D006289 1.5e-75 287.0 252 57.5
Aa31LG3G7640 Aethionema arabicum HOM05D004971 ORTHO05D006289 1.9e-75 286.6 243 58.4
FAN28G1806 Fragaria x ananassa HOM05D001382 ORTHO05D006289 2.5e-75 286.2 262 58.0
Gohir.A07G004400 Gossypium hirsutum HOM05D004971 ORTHO05D006289 2.5e-75 286.2 249 57.0
Sc08g0007770 Simmondsia chinensis HOM05D004971 ORTHO05D006289 4.3e-75 285.4 253 56.5
FAN23G0317 Fragaria x ananassa HOM05D001382 ORTHO05D006289 7.3e-75 284.6 262 57.6
vmacro06238 Vaccinium macrocarpon HOM05D004971 ORTHO05D006289 7.3e-75 284.6 299 49.2
arahy.Tifrunner.gnm1.ann1.050WC1 Arachis hypogaea HOM05D004971 ORTHO05D006289 9.5e-75 284.3 264 54.2
A03p16290 Brassica napus HOM05D004971 ORTHO05D006289 1.6e-74 283.5 240 57.9
C02p20580 Brassica napus HOM05D004971 ORTHO05D006289 1.6e-74 283.5 246 57.3
Potri.018G084700 Populus trichocarpa HOM05D004971 ORTHO05D006289 1.6e-74 283.5 257 54.5
Actinidia32663 Actinidia chinensis HOM05D004971 ORTHO05D006289 2.8e-74 282.7 264 54.5
AUR62008451 Chenopodium quinoa HOM05D004971 ORTHO05D006289 1.1e-73 280.8 248 56.0
BraA03t10920Z Brassica rapa HOM05D004971 ORTHO05D006289 1.4e-73 280.4 241 58.1
CsaV3_1G020790 Cucumis sativus L. HOM05D004971 ORTHO05D006289 1.2e-72 277.3 283 51.6
Sabra18G0073100 Salix brachista HOM05D004971 ORTHO05D006289 1.5e-72 276.9 258 53.5
TAR636G2606 Trochodendron aralioides HOM05D004971 ORTHO05D006289 1.5e-72 276.9 265 54.0
TAR626G1908 Trochodendron aralioides HOM05D001382 ORTHO05D006289 2.0e-72 276.6 265 54.0
TWI12G1172 Tripterygium wilfordii HOM05D004971 ORTHO05D006289 2.6e-72 276.2 244 57.4
Atru.chr7.1418 Acer truncatum HOM05D004971 ORTHO05D006289 3.4e-72 275.8 252 56.3
Nn3g18146 Nelumbo nucifera HOM05D004971 ORTHO05D006289 5.8e-72 275.0 253 53.8
Psat7g014440 Pisum sativum HOM05D004971 ORTHO05D006289 5.4e-70 268.5 241 56.0
arahy.Tifrunner.gnm1.ann1.R8N6MQ Arachis hypogaea HOM05D004971 ORTHO05D006289 9.2e-70 267.7 265 52.8
ClCG06G008900 Citrullus lanatus HOM05D004971 ORTHO05D006289 9.2e-70 267.7 236 55.5
PSO675G4950 Papaver somniferum HOM05D004971 ORTHO05D006289 2.3e-68 263.1 258 51.6
PSO541G6366 Papaver somniferum HOM05D004971 ORTHO05D006289 4.3e-67 258.8 261 51.3
Os08g0540500 Oryza sativa ssp. japonica HOM05D004971 ORTHO05D006289 2.1e-66 256.5 249 51.0
Nitab4.5_0002165g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 4.7e-66 255.4 253 54.9
Lj7A659G31 Lonicera japonica HOM05D004971 ORTHO05D006289 2.4e-65 253.1 232 56.5
SHI02711 Sapria himalayana HOM05D004971 ORTHO05D006289 4.0e-65 252.3 247 51.8
Cfa003218 Carpinus fangiana HOM05D001382 ORTHO05D001266 6.9e-65 251.5 226 57.5
Aqoxy7G01513 Aquilegia oxysepala HOM05D004971 ORTHO05D006289 4.4e-64 248.8 258 48.8
DCAR_028679 Daucus carota HOM05D004971 ORTHO05D006289 4.4e-64 248.8 250 52.4
HPP92_012900 Vanilla planifolia HOM05D004971 ORTHO05D006289 1.1e-62 244.2 253 48.6
HPP92_012921 Vanilla planifolia HOM05D004971 ORTHO05D006289 1.4e-62 243.8 253 48.2
Manes.16G112100 Manihot esculenta HOM05D004971 ORTHO05D006289 4.2e-62 242.3 211 57.8
Ciclev10009268m.g Citrus clementina HOM05D004971 ORTHO05D006289 5.4e-62 241.9 241 51.5
MELO3C024707.2 Cucumis melo HOM05D004971 ORTHO05D006289 4.6e-61 238.8 227 53.3
Sed0000382 Sechium edule HOM05D004971 ORTHO05D006289 4.6e-61 238.8 211 55.5
AagrBONN_evm.TU.Sc2ySwM_117.3390 Anthoceros agrestis HOM05D004971 ORTHO05D006289 2.4e-57 226.5 239 47.3
SMO232G0003 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 1.3e-55 220.7 248 46.0
CSS0049746 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 4.9e-55 218.8 195 55.4
Mapoly0002s0233 Marchantia polymorpha HOM05D004971 ORTHO05D006289 4.9e-55 218.8 281 40.6
SMO241G0030 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 3.2e-54 216.1 252 44.0
Thhalv10006518m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 4.2e-54 215.7 209 52.2
Thhalv10027230m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 4.2e-54 215.7 209 52.2
Lalb_Chr14g0371731 Lupinus albus HOM05D004971 ORTHO05D006289 4.2e-54 215.7 242 45.0
CDE11G0552 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 2.3e-52 209.9 257 44.7
Thhalv10026861m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 8.7e-52 208.0 209 52.6
SEGI_33858 Sequoiadendron giganteum HOM05D004971 ORTHO05D006289 2.5e-51 206.5 316 38.0
Thhalv10027410m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 9.6e-51 204.5 209 52.2
Thhalv10027350m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.1e-49 201.1 214 48.1
Duzib150G1337 Durio zibethinus HOM05D004971 ORTHO05D006289 3.2e-46 189.5 173 54.9
MD02G1058100 Malus domestica HOM05D004971 ORTHO05D006289 5.5e-46 188.7 242 42.6
Pp3c17_15270 Physcomitrium patens HOM05D004971 ORTHO05D006289 4.3e-43 179.1 259 38.2
Lalb_Chr24g0397391 Lupinus albus HOM05D004971 ORTHO05D006289 2.8e-42 176.4 181 46.4
ATR0315G075 Amborella trichopoda HOM05D004971 ORTHO05D006289 2.9e-39 166.4 199 42.7
CDE05G3470 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 2.9e-39 166.4 123 63.4
EL10Ac8g18422 Beta vulgaris HOM05D004971 ORTHO05D006289 7.9e-37 158.3 135 59.3
MCO09G154 Micromonas commoda HOM05D004971 ORTHO05D006289 4.5e-32 142.5 258 33.7
CBR_g687 Chara braunii HOM05D004971 ORTHO05D006289 7.2e-30 135.2 400 26.5
Ca_17315_v3 Cicer arietinum L. HOM05D004971 ORTHO05D006289 2.1e-29 133.7 136 51.5
Haze_02526 Corylus avellana HOM05D004971 ORTHO05D006289 1.0e-28 131.3 144 52.1
Zm00001eb198370 Zea mays HOM05D004971 ORTHO05D006289 2.8e-26 123.2 138 47.1
PRCOL_00000240 Prasinoderma coloniale HOM05D004971 ORTHO05D006289 2.4e-25 120.2 295 27.8
Lj4g0009518 Lotus japonicus HOM05D004971 ORTHO05D006289 5.3e-25 119.0 74 68.9
Haze_02523 Corylus avellana HOM05D004971 ORTHO05D006289 6.9e-25 118.6 132 52.3
MBI04_g02609_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D000022 9.1e-25 118.2 352 27.6
Cre15.g636450 Chlamydomonas reinhardtii HOM05D004971 ORTHO05D006289 3.8e-23 112.8 371 25.9
Nitab4.5_0001706g0070 Nicotiana tabacum HOM05D004971 ORTHO05D006289 3.0e-20 103.2 103 54.4
Nitab4.5_0002165g0090 Nicotiana tabacum HOM05D004971 ORTHO05D006289 2.0e-19 100.5 57 80.7
arahy.Tifrunner.gnm1.ann1.D57MTL Arachis hypogaea HOM05D004971 ORTHO05D006289 2.2e-18 97.1 128 39.8
Lalb_Chr24g0397371 Lupinus albus HOM05D004971 ORTHO05D006289 3.7e-18 96.3 131 42.0
Actinidia07401 Actinidia chinensis HOM05D004971 ORTHO05D006289 3.4e-16 89.7 54 75.9
arahy.Tifrunner.gnm1.ann1.2J0XRF Arachis hypogaea HOM05D004971 ORTHO05D006289 4.5e-16 89.4 132 37.1
CSS0032398 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 6.1e-13 79.0 52 67.3
Cpa.g.sc40.24 Carica papaya HOM05D004971 ORTHO05D006289 2.3e-12 77.0 39 84.6
MBI19_g24589_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 7.4e-11 72.0 63 54.0
MBI19_g42779_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 2.2e-10 70.5 167 32.3
FvH4_7g02600 Fragaria vesca HOM05D004971 ORTHO05D022553 1.2e-08 64.7 40 67.5
Nitab4.5_0001706g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.6e-08 64.3 29 96.6
FvH4_7g02480 Fragaria vesca HOM05D004971 ORTHO05D022553 3.5e-08 63.2 38 68.4
CiPaw.05G218700 Carya illinoinensis HOM05D004971 ORTHO05D006289 9.4e-06 55.1 32 68.8


User provided reference genes

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