Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G395.52 Capsicum annuum HOM05D006232 ORTHO05D007746 1.9e-81 305.8 159 100.0
CAN.G691.16 Capsicum annuum HOM05D006232 ORTHO05D007746 3.2e-44 182.2 158 62.0
PGSC0003DMG400016173 Solanum tuberosum HOM05D006232 ORTHO05D007746 4.1e-44 181.8 154 63.6
Sopen11g004540 Solanum pennellii HOM05D006232 ORTHO05D007746 3.9e-42 175.3 154 61.7
Solyc11g008760.3 Solanum lycopersicum HOM05D006232 ORTHO05D007746 8.6e-42 174.1 154 61.0
Peaxi162Scf00254g00041 Petunia axillaris HOM05D006232 ORTHO05D007746 6.8e-39 164.5 155 58.1
Peaxi162Scf00890g00001 Petunia axillaris HOM05D006232 ORTHO05D007746 7.5e-38 161.0 97 80.4
Nitab4.5_0000743g0190 Nicotiana tabacum HOM05D006232 ORTHO05D007746 3.0e-34 149.1 96 77.1
Nitab4.5_0001677g0020 Nicotiana tabacum HOM05D006232 ORTHO05D007746 3.0e-34 149.1 96 76.0
SalBow8G3454 Salvia bowleyana HOM05D006232 ORTHO05D007746 6.6e-26 121.3 233 35.2
Oeu062029.1 Olea europaea HOM05D006232 ORTHO05D007746 8.6e-26 120.9 154 40.3
CSS0030017 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 2.4e-23 112.8 100 56.0
CSS0005474 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 4.0e-23 112.1 100 54.0
CSS0021551 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 4.0e-23 112.1 100 54.0
CSS0047958 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 8.9e-23 110.9 100 53.0
arahy.Tifrunner.gnm1.ann1.NHK9RM Arachis hypogaea HOM05D006232 ORTHO05D007746 1.5e-22 110.2 165 40.0
COL.COLO4_23076 Corchorus olitorius HOM05D006232 ORTHO05D007746 2.0e-22 109.8 244 36.1
Cc09_g04270 Coffea canephora HOM05D006232 ORTHO05D007746 3.4e-22 109.0 152 39.5
Actinidia23019 Actinidia chinensis HOM05D006232 ORTHO05D007746 2.2e-21 106.3 99 51.5
FAN10G2235 Fragaria x ananassa HOM05D006232 ORTHO05D007746 8.4e-21 104.4 165 36.4
Rhsim06G0114200 Rhododendron simsii HOM05D006232 ORTHO05D007746 3.2e-20 102.4 95 50.5
RcHm_v2.0_Chr1g0361811 Rosa chinensis HOM05D006232 ORTHO05D007746 4.2e-20 102.1 100 49.0
FAN03G0759 Fragaria x ananassa HOM05D006232 ORTHO05D007746 5.4e-20 101.7 100 47.0
FAN10G2312 Fragaria x ananassa HOM05D006232 ORTHO05D007746 5.4e-20 101.7 100 48.0
FAN06G0943 Fragaria x ananassa HOM05D006232 ORTHO05D007746 1.2e-19 100.5 100 47.0
GSVIVG01010456001 Vitis vinifera HOM05D006232 ORTHO05D007746 1.2e-19 100.5 95 52.6
FAN06G1608 Fragaria x ananassa HOM05D006232 ORTHO05D007746 2.1e-19 99.8 100 47.0
Lj1P725T29 Lonicera japonica HOM05D006232 ORTHO05D007746 2.1e-19 99.8 94 48.9
Prupe.2G203600 Prunus persica HOM05D006232 ORTHO05D007746 2.1e-19 99.8 99 47.5
FvH4_7g18170 Fragaria vesca HOM05D006232 ORTHO05D007746 2.7e-19 99.4 100 46.0
TWI59G0137 Tripterygium wilfordii HOM05D006232 ORTHO05D007746 2.7e-19 99.4 100 48.0
Lalb_Chr15g0076621 Lupinus albus HOM05D006232 ORTHO05D007746 3.5e-19 99.0 90 50.0
vmacro04311 Vaccinium macrocarpon HOM05D006232 ORTHO05D007746 4.6e-19 98.6 95 49.5
Cpa.g.sc314.5 Carica papaya HOM05D006232 ORTHO05D007746 7.8e-19 97.8 100 47.0
Lj1g0009831 Lotus japonicus HOM05D006232 ORTHO05D007746 7.8e-19 97.8 95 47.4
MSTRG.8185 Avicennia marina HOM05D006232 ORTHO05D007746 1.0e-18 97.4 95 46.3
BcaB01g02134 Brassica carinata HOM05D006232 ORTHO05D007746 1.0e-18 97.4 158 36.1
AT4G01570 Arabidopsis thaliana HOM05D006232 ORTHO05D007746 1.7e-18 96.7 98 46.9
DCAR_015569 Daucus carota HOM05D006232 ORTHO05D007746 2.3e-18 96.3 102 46.1
THA.LOC104801339 Tarenaya hassleriana HOM05D006232 ORTHO05D007746 2.3e-18 96.3 94 48.9
Phvul.011G061000 Phaseolus vulgaris HOM05D006232 ORTHO05D007746 3.9e-18 95.5 160 35.0
AL6G51770 Arabidopsis lyrata HOM05D006232 ORTHO05D007746 6.6e-18 94.7 98 44.9
FAN01G1185 Fragaria x ananassa HOM05D006232 ORTHO05D007746 6.6e-18 94.7 100 46.0
Manes.07G094000 Manihot esculenta HOM05D006232 ORTHO05D007746 6.6e-18 94.7 97 47.4
PGR092G0006 Punica granatum HOM05D006232 ORTHO05D007746 6.6e-18 94.7 91 47.3
TAR371G1107 Trochodendron aralioides HOM05D006232 ORTHO05D007746 1.1e-17 94.0 102 43.1
Thecc.01G330100 Theobroma cacao HOM05D006232 ORTHO05D007746 1.5e-17 93.6 98 48.0
MD01G1095900 Malus domestica HOM05D006232 ORTHO05D007746 1.9e-17 93.2 101 43.6
QL08p048137 Quercus lobata HOM05D006232 ORTHO05D007746 1.9e-17 93.2 100 47.0
Gohir.D07G137500 Gossypium hirsutum HOM05D006232 ORTHO05D007746 2.5e-17 92.8 102 47.1
Gorai.001G149600 Gossypium raimondii HOM05D006232 ORTHO05D007746 2.5e-17 92.8 102 47.1
MD01G1097600 Malus domestica HOM05D006232 ORTHO05D007746 2.5e-17 92.8 101 46.5
VMungo1127G1689 Vigna mungo HOM05D006232 ORTHO05D007746 2.5e-17 92.8 95 46.3
Thhalv10028437m.g Eutrema salsugineum HOM05D006232 ORTHO05D007746 3.3e-17 92.4 97 45.4
Sc15g0005080 Simmondsia chinensis HOM05D006232 ORTHO05D007746 4.3e-17 92.0 103 47.6
A09p01130 Brassica napus HOM05D006232 ORTHO05D007746 5.6e-17 91.7 98 43.9
C09p01210 Brassica napus HOM05D006232 ORTHO05D007746 5.6e-17 91.7 158 33.5
BolC9t53055H Brassica oleracea HOM05D006232 ORTHO05D007746 5.6e-17 91.7 158 33.5
BraA09t35784Z Brassica rapa HOM05D006232 ORTHO05D007746 5.6e-17 91.7 98 43.9
Glyma.11G135300 Glycine max HOM05D006232 ORTHO05D007746 5.6e-17 91.7 95 47.4
CARHR250090 Cardamine hirsuta HOM05D006232 ORTHO05D007746 7.3e-17 91.3 98 44.9
BcaC04g24085 Brassica carinata HOM05D006232 ORTHO05D007746 1.3e-16 90.5 98 42.9
Haze_15770 Corylus avellana HOM05D006232 ORTHO05D007746 1.3e-16 90.5 97 44.3
ECA247G0464 Erigeron canadensis HOM05D006232 ORTHO05D007746 1.3e-16 90.5 96 45.8
Nn2g14420 Nelumbo nucifera HOM05D006232 ORTHO05D007746 1.6e-16 90.1 102 45.1
Atru.chr5.807 Acer truncatum HOM05D006232 ORTHO05D007746 2.1e-16 89.7 100 47.0
Lsat_1_v5_gn_4_109581 Lactuca sativa HOM05D006232 ORTHO05D007746 2.8e-16 89.4 100 47.0
MBI12_g26899_MAGBIO Magnolia biondii HOM05D006232 ORTHO05D007746 2.8e-16 89.4 99 45.5
Hund17178 Selenicereus undatus HOM05D006232 ORTHO05D007746 2.8e-16 89.4 100 46.0
Gohir.A07G133100 Gossypium hirsutum HOM05D006232 ORTHO05D007746 3.6e-16 89.0 97 46.4
Sp6g01480 Schrenkiella parvula HOM05D006232 ORTHO05D007746 3.6e-16 89.0 95 46.3
Sabra02G0132400 Salix brachista HOM05D006232 ORTHO05D007746 8.1e-16 87.8 95 44.2
Aqoxy3G03779 Aquilegia oxysepala HOM05D006232 ORTHO05D007746 1.4e-15 87.0 98 46.9
arahy.Tifrunner.gnm1.ann1.MJ9C76 Arachis hypogaea HOM05D006232 ORTHO05D007746 1.8e-15 86.7 98 42.9
AUR62025831 Chenopodium quinoa HOM05D006232 ORTHO05D007746 1.8e-15 86.7 103 42.7
Eucgr.A00015 Eucalyptus grandis HOM05D006232 ORTHO05D007746 1.8e-15 86.7 106 43.4
CiPaw.11G045400 Carya illinoinensis HOM05D006232 ORTHO05D007746 2.4e-15 86.3 90 46.7
Carub.0006s3563 Capsella rubella HOM05D006232 ORTHO05D007746 3.1e-15 85.9 92 44.6
arahy.Tifrunner.gnm1.ann1.YGP4KT Arachis hypogaea HOM05D006232 ORTHO05D007746 6.9e-15 84.7 93 43.0
Migut.F01833 Erythranthe guttata HOM05D006232 ORTHO05D007746 6.9e-15 84.7 232 27.2
Nn6g33415 Nelumbo nucifera HOM05D006232 ORTHO05D007746 1.5e-14 83.6 99 42.4
arahy.Tifrunner.gnm1.ann1.E4FCEH Arachis hypogaea HOM05D006232 ORTHO05D007746 2.0e-14 83.2 93 43.0
Potri.002G183100 Populus trichocarpa HOM05D006232 ORTHO05D007746 2.0e-14 83.2 95 42.1
SGA_v2.0_scaffold153G36899 Striga asiatica HOM05D006232 ORTHO05D007315 2.6e-14 82.8 94 46.8
HPP92_002273 Vanilla planifolia HOM05D006232 ORTHO05D007746 4.4e-14 82.0 98 40.8
Duzib138G0398 Durio zibethinus HOM05D006232 ORTHO05D007746 5.8e-14 81.6 98 43.9
Potri.002G182900 Populus trichocarpa HOM05D006232 ORTHO05D007746 5.8e-14 81.6 95 42.1
Aa31LG5G1290 Aethionema arabicum HOM05D006232 ORTHO05D007746 7.6e-14 81.3 94 44.7
EL10Ac1g00635 Beta vulgaris HOM05D006232 ORTHO05D007746 9.9e-14 80.9 99 41.4
Hma1.2p1_0074F.1_g038910 Hydrangea macrophylla HOM05D006232 ORTHO05D007746 1.3e-13 80.5 68 48.5
HanXRQChr09g0270591 Helianthus annuus HOM05D006232 ORTHO05D007746 2.2e-13 79.7 97 40.2
PSO782G2059 Papaver somniferum HOM05D006232 ORTHO05D007746 3.8e-13 79.0 100 38.0
TPR.G23396 Trifolium pratense HOM05D006232 ORTHO05D007746 3.8e-13 79.0 93 38.7
EL10Ac1g00638 Beta vulgaris HOM05D006232 ORTHO05D007746 6.4e-13 78.2 99 40.4
Psat3g203240 Pisum sativum HOM05D006232 ORTHO05D007746 6.4e-13 78.2 93 39.8
ATR0684G123 Amborella trichopoda HOM05D006232 ORTHO05D007746 1.9e-12 76.6 95 42.1
Medtr7g016910 Medicago truncatula HOM05D006232 ORTHO05D007746 3.2e-12 75.9 93 39.8
Ca_06909_v3 Cicer arietinum L. HOM05D006232 ORTHO05D007746 5.4e-12 75.1 93 39.8
CDE09G0095 Ceratophyllum demersum HOM05D006232 ORTHO05D007746 1.2e-11 73.9 100 41.0
Os03g0712900 Oryza sativa ssp. japonica HOM05D006232 ORTHO05D007746 2.7e-11 72.8 91 40.7
Sed0020235 Sechium edule HOM05D006232 ORTHO05D007746 2.3e-10 69.7 97 37.1
MELO3C022296.2 Cucumis melo HOM05D006232 ORTHO05D007746 3.9e-10 68.9 97 35.1
CsaV3_6G008430 Cucumis sativus L. HOM05D006232 ORTHO05D007746 6.6e-10 68.2 98 33.7
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 1.5e-09 67.0 94 36.2
SHI19982 Sapria himalayana HOM05D006232 ORTHO05D007746 1.1e-07 60.8 92 35.9
SGA_v2.0_scaffold83G26365 Striga asiatica HOM05D006232 ORTHO05D007746 1.4e-07 60.5 106 33.0
MD01G1096200 Malus domestica HOM05D006232 ORTHO05D007746 3.1e-07 59.3 65 40.0
SGA_v2.0_scaffold83G26364 Striga asiatica HOM05D003442 ORTHO05D004005 3.1e-07 59.3 73 45.2


User provided reference genes

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