Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 2.2e-91 339.0 170 100.0
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 1.4e-37 160.2 82 96.3
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 1.8e-37 159.8 82 96.3
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 1.2e-36 157.1 89 88.8
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 1.5e-36 156.8 77 100.0
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 7.5e-36 154.5 79 93.7
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 7.5e-36 154.5 80 95.0
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 7.5e-36 154.5 79 96.2
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 7.5e-36 154.5 83 90.4
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 2.2e-35 152.9 84 89.3
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 3.7e-35 152.1 77 94.8
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 3.7e-35 152.1 77 94.8
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 3.7e-35 152.1 78 97.4
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 3.7e-35 152.1 81 91.4
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 3.7e-35 152.1 78 97.4
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 4.9e-35 151.8 83 91.6
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 8.3e-35 151.0 78 96.2
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 1.1e-34 150.6 81 92.6
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 1.9e-34 149.8 77 96.1
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 1.9e-34 149.8 133 64.7
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.4e-34 149.4 84 89.3
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 3.2e-34 149.1 77 94.8
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 4.1e-34 148.7 77 94.8
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 4.1e-34 148.7 77 90.9
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 5.4e-34 148.3 77 93.5
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 1.6e-33 146.7 86 86.0
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 2.7e-33 146.0 97 77.3
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 2.7e-33 146.0 80 88.8
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 3.5e-33 145.6 79 88.6
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 3.5e-33 145.6 79 88.6
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 3.5e-33 145.6 79 88.6
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 3.5e-33 145.6 77 93.5
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 6.0e-33 144.8 79 91.1
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 6.0e-33 144.8 81 87.7
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 6.0e-33 144.8 77 93.5
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 7.8e-33 144.4 80 87.5
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 7.8e-33 144.4 81 88.9
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 1.0e-32 144.1 80 87.5
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 1.0e-32 144.1 80 87.5
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 1.0e-32 144.1 88 80.7
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 1.0e-32 144.1 88 80.7
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 1.0e-32 144.1 77 87.0
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 1.0e-32 144.1 77 90.9
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 1.7e-32 143.3 77 87.0
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 2.3e-32 142.9 79 88.6
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 2.3e-32 142.9 80 86.2
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 2.3e-32 142.9 79 88.6
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 3.0e-32 142.5 77 90.9
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 3.0e-32 142.5 81 84.0
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 3.0e-32 142.5 81 84.0
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 3.0e-32 142.5 81 84.0
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 3.0e-32 142.5 81 87.7
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 3.9e-32 142.1 79 89.9
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 5.1e-32 141.7 77 89.6
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 5.1e-32 141.7 80 88.8
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 6.6e-32 141.4 78 89.7
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 6.6e-32 141.4 77 89.6
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 6.6e-32 141.4 77 89.6
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 8.6e-32 141.0 77 88.3
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 8.6e-32 141.0 79 86.1
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 8.6e-32 141.0 77 88.3
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 8.6e-32 141.0 77 88.3
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 1.1e-31 140.6 99 72.7
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 1.1e-31 140.6 77 87.0
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 1.1e-31 140.6 77 88.3
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 1.1e-31 140.6 77 88.3
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 1.1e-31 140.6 77 87.0
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 1.1e-31 140.6 77 90.9
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 1.5e-31 140.2 77 87.0
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 1.5e-31 140.2 77 87.0
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 1.5e-31 140.2 77 87.0
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 1.5e-31 140.2 77 87.0
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 1.5e-31 140.2 77 88.3
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 1.5e-31 140.2 77 88.3
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 1.5e-31 140.2 77 87.0
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 1.5e-31 140.2 77 88.3
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 1.5e-31 140.2 77 87.0
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 1.9e-31 139.8 77 88.3
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 1.9e-31 139.8 77 88.3
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 1.9e-31 139.8 77 84.4
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 2.5e-31 139.4 86 80.2
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 3.3e-31 139.0 93 75.3
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 3.3e-31 139.0 77 87.0
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 3.3e-31 139.0 77 89.6
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 3.3e-31 139.0 77 87.0
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 3.3e-31 139.0 77 87.0
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 3.3e-31 139.0 77 85.7
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 4.3e-31 138.7 77 85.7
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 4.3e-31 138.7 79 84.8
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 4.3e-31 138.7 79 84.8
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 4.3e-31 138.7 81 81.5
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 4.3e-31 138.7 77 85.7
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 4.3e-31 138.7 77 85.7
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 4.3e-31 138.7 77 85.7
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 5.6e-31 138.3 77 87.0
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 7.3e-31 137.9 77 84.4
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 7.3e-31 137.9 77 85.7
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 7.3e-31 137.9 77 85.7
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 1.2e-30 137.1 80 82.5
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 1.2e-30 137.1 76 85.5
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 2.1e-30 136.3 75 90.7
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 2.1e-30 136.3 75 88.0
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 2.1e-30 136.3 75 88.0
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 2.1e-30 136.3 77 84.4
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 2.1e-30 136.3 77 83.1
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 2.8e-30 136.0 77 83.1
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 2.8e-30 136.0 77 85.7
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 3.6e-30 135.6 70 91.4
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 3.6e-30 135.6 78 84.6
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 4.7e-30 135.2 79 82.3
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 8.1e-30 134.4 75 88.0
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 2.3e-29 132.9 77 84.4
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 2.3e-29 132.9 77 84.4
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 3.1e-29 132.5 73 86.3
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 3.1e-29 132.5 75 85.3
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 8.9e-29 131.0 77 77.9
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 1.2e-28 130.6 77 76.6
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 1.5e-28 130.2 75 84.0
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 2.6e-28 129.4 84 77.4
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 4.4e-28 128.6 77 75.3
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 3.8e-27 125.6 71 84.5
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 6.4e-27 124.8 71 84.5
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 1.1e-26 124.0 67 92.5
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 1.9e-26 123.2 76 76.3
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 9.2e-26 120.9 77 77.9
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 9.2e-26 120.9 77 77.9
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 1.7e-24 116.7 71 80.3
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 1.5e-23 113.6 88 69.3
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 1.2e-22 110.5 105 58.1
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 2.8e-22 109.4 75 64.0
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 2.8e-22 109.4 70 64.3
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 6.2e-22 108.2 54 96.3
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 5.8e-20 101.7 57 84.2
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 7.6e-20 101.3 56 85.7
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 1.1e-18 97.4 62 77.4
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 3.2e-18 95.9 51 86.3
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 5.1e-16 88.6 104 44.2
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 6.2e-14 81.6 45 86.7
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 4.0e-13 79.0 75 46.7
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 4.5e-12 75.5 81 54.3
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 3.8e-11 72.4 42 78.6
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 8.4e-11 71.2 75 45.3
QL11p051435 Quercus lobata HOM05D004554 ORTHO05D005360 3.7e-06 55.8 29 89.7


User provided reference genes

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