Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 2.4e-155 552.0 256 100.0
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 4.9e-140 501.1 259 89.6
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 5.5e-139 497.7 256 91.0
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 1.6e-138 496.1 256 91.4
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 3.0e-137 491.9 256 90.2
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 1.1e-136 490.0 246 91.5
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 2.2e-135 485.7 252 88.5
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 2.8e-135 485.3 249 89.2
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 6.3e-135 484.2 250 89.2
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 6.5e-132 474.2 251 86.1
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 4.2e-131 471.5 240 90.4
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 1.6e-130 469.5 252 86.1
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 2.1e-130 469.2 249 85.5
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 6.1e-130 467.6 233 91.4
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 1.4e-129 466.5 250 85.6
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 1.8e-129 466.1 251 83.7
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 2.5e-128 462.2 249 83.5
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 1.4e-126 456.4 237 86.1
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 1.8e-126 456.1 250 81.6
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 3.1e-126 455.3 252 81.7
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 6.9e-126 454.1 247 81.0
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 1.5e-125 453.0 247 82.6
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 2.6e-125 452.2 255 80.8
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 2.6e-125 452.2 257 79.4
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 2.6e-125 452.2 250 81.2
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 2.6e-125 452.2 238 85.3
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 3.4e-125 451.8 255 78.8
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 4.5e-125 451.4 246 81.7
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 7.7e-125 450.7 246 82.9
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 1.3e-124 449.9 237 84.8
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 2.9e-124 448.7 247 81.4
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 1.1e-123 446.8 258 79.5
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 2.5e-123 445.7 251 79.3
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 2.5e-123 445.7 256 79.3
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 3.2e-123 445.3 236 83.1
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 5.5e-123 444.5 247 81.8
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 5.5e-123 444.5 244 82.4
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 7.2e-123 444.1 247 80.6
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 1.2e-122 443.4 246 81.3
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 1.2e-122 443.4 236 82.2
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 6.1e-122 441.0 239 82.8
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 1.0e-121 440.3 233 84.5
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 1.8e-121 439.5 251 78.9
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 2.3e-121 439.1 247 79.8
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 3.0e-121 438.7 234 81.6
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 3.0e-121 438.7 250 79.6
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 5.1e-121 438.0 234 81.6
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 8.8e-121 437.2 233 82.0
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 1.1e-120 436.8 234 81.2
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 1.5e-120 436.4 234 81.2
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 2.0e-120 436.0 252 78.2
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 2.0e-120 436.0 235 82.1
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 2.6e-120 435.6 250 80.0
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 3.3e-120 435.3 253 77.1
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 3.3e-120 435.3 249 78.7
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 7.4e-120 434.1 246 78.5
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 7.4e-120 434.1 254 77.2
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 9.7e-120 433.7 251 78.5
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 1.3e-119 433.3 253 76.3
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 1.7e-119 433.0 235 80.0
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 2.2e-119 432.6 253 75.9
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 2.2e-119 432.6 254 76.8
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 2.2e-119 432.6 248 76.6
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 2.2e-119 432.6 251 76.1
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 2.8e-119 432.2 250 78.4
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 3.7e-119 431.8 235 80.4
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 6.3e-119 431.0 244 77.0
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 1.4e-118 429.9 253 75.5
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 1.4e-118 429.9 247 76.9
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 1.4e-118 429.9 242 78.1
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 1.8e-118 429.5 249 77.5
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 1.8e-118 429.5 242 78.1
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 2.4e-118 429.1 252 75.4
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 2.4e-118 429.1 249 76.3
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 2.4e-118 429.1 236 80.5
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 2.4e-118 429.1 250 76.8
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 4.1e-118 428.3 250 77.2
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 4.1e-118 428.3 254 75.6
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 5.3e-118 427.9 249 76.7
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 9.1e-118 427.2 242 78.1
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 1.2e-117 426.8 250 75.6
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 1.5e-117 426.4 254 76.0
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 2.0e-117 426.0 249 76.3
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 2.6e-117 425.6 249 77.1
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 2.6e-117 425.6 254 75.6
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 2.6e-117 425.6 237 78.1
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 3.4e-117 425.2 239 77.4
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 5.9e-117 424.5 248 76.2
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 5.9e-117 424.5 234 79.9
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 7.7e-117 424.1 256 73.8
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 1.0e-116 423.7 241 77.6
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 1.0e-116 423.7 236 78.8
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 1.0e-116 423.7 247 76.1
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 1.3e-116 423.3 255 75.3
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 2.2e-116 422.5 252 74.6
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 2.9e-116 422.2 249 75.1
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 2.9e-116 422.2 233 79.0
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 3.8e-116 421.8 248 76.6
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 5.0e-116 421.4 237 78.1
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 6.5e-116 421.0 233 78.5
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 8.5e-116 420.6 249 75.9
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 1.1e-115 420.2 248 74.6
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.1e-115 420.2 233 79.0
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 1.4e-115 419.9 234 76.5
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 1.9e-115 419.5 253 75.1
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 1.9e-115 419.5 245 75.5
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 2.5e-115 419.1 248 75.8
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 2.5e-115 419.1 247 74.5
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 3.2e-115 418.7 243 76.1
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 5.5e-115 417.9 251 73.7
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 7.2e-115 417.5 248 75.8
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 1.2e-114 416.8 243 75.7
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 1.2e-114 416.8 247 74.1
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 1.2e-114 416.8 231 78.8
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 2.1e-114 416.0 255 72.5
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 3.6e-114 415.2 243 75.3
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 6.1e-114 414.5 250 73.6
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 1.0e-113 413.7 248 75.4
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 1.0e-113 413.7 248 75.4
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 1.0e-113 413.7 248 75.4
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 1.0e-113 413.7 250 73.6
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.0e-113 413.7 246 74.8
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 1.0e-113 413.7 246 74.8
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 3.9e-113 411.8 249 72.7
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 5.2e-113 411.4 246 74.4
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 6.7e-113 411.0 250 72.4
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 1.1e-112 410.2 236 75.8
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 2.6e-112 409.1 251 71.3
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 2.6e-112 409.1 249 72.7
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 4.4e-112 408.3 241 73.9
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 5.7e-112 407.9 227 78.0
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 5.7e-112 407.9 246 74.8
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 5.7e-112 407.9 228 81.1
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 7.4e-112 407.5 226 76.1
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 9.7e-112 407.1 255 72.9
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 1.7e-111 406.4 247 73.7
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 5.3e-110 401.4 241 73.0
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 1.3e-108 396.7 240 72.9
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 1.7e-108 396.4 237 75.9
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 1.2e-106 390.2 243 72.8
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 1.0e-105 387.1 227 72.2
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 2.0e-104 382.9 227 72.2
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 8.5e-100 367.5 212 78.8
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 1.0e-97 360.5 233 67.8
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 3.4e-96 355.5 240 65.4
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 7.5e-96 354.4 223 68.6
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 9.8e-96 354.0 248 65.3
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 1.1e-94 350.5 235 66.0
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 2.4e-94 349.4 228 67.1
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 5.4e-94 348.2 232 68.1
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 2.2e-87 326.2 159 88.7
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 2.8e-87 325.9 156 93.6
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 4.9e-87 325.1 226 65.5
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 2.3e-84 316.2 251 61.0
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 1.2e-82 310.5 176 80.1
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 6.0e-61 238.4 159 65.4
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 3.0e-52 209.5 218 46.3
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 3.3e-51 206.1 232 47.0
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 1.1e-49 201.1 202 52.5
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 9.0e-41 171.4 89 84.3
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 5.3e-33 145.6 107 66.4
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 1.1e-27 127.9 116 55.2
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 4.8e-26 122.5 140 47.1
Sc12g0009110 Simmondsia chinensis HOM05D004328 ORTHO05D387867 3.8e-15 86.3 51 64.7
Zm00001eb029120 Zea mays HOM05D004328 ORTHO05D442189 1.1e-11 74.7 63 58.7
Sopen01g044130 Solanum pennellii HOM05D004328 ORTHO05D394079 3.7e-10 69.7 45 77.8


User provided reference genes

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