Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G395.13 Capsicum annuum HOM05D003277 ORTHO05D003275 2.4e-65 251.9 120 100.0
PGSC0003DMG400016508 Solanum tuberosum HOM05D003277 ORTHO05D003275 1.8e-39 166.0 114 71.9
Sopen06g025000 Solanum pennellii HOM05D003277 ORTHO05D003275 2.6e-38 162.2 107 74.8
Solyc06g066710.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 5.7e-38 161.0 111 71.2
Nitab4.5_0000671g0120 Nicotiana tabacum HOM05D003277 ORTHO05D003275 7.7e-35 150.6 116 62.1
Nitab4.5_0005851g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 2.2e-34 149.1 115 61.7
Peaxi162Scf00015g00042 Petunia axillaris HOM05D003277 ORTHO05D003275 2.9e-34 148.7 107 67.3
PGSC0003DMG400005684 Solanum tuberosum HOM05D003277 ORTHO05D003275 1.8e-31 139.4 115 58.3
Sopen03g039050 Solanum pennellii HOM05D003277 ORTHO05D003275 6.7e-31 137.5 115 58.3
Solyc03g120170.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 1.5e-30 136.3 114 57.9
Nitab4.5_0002859g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 1.3e-26 123.2 107 64.5
SalBow2G1122 Salvia bowleyana HOM05D003277 ORTHO05D003275 9.4e-25 117.1 106 55.7
Nitab4.5_0014613g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 1.0e-23 113.6 107 57.9
CAN.G438.69 Capsicum annuum HOM05D003277 ORTHO05D003275 2.2e-21 105.9 88 61.4
Migut.I00868 Erythranthe guttata HOM05D003277 ORTHO05D003275 3.7e-21 105.1 128 50.0
Oeu033486.1 Olea europaea HOM05D003277 ORTHO05D003275 1.4e-20 103.2 115 52.2
Hma1.2p1_0092F.1_g046645 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 4.1e-20 101.7 116 49.1
Oeu063975.1 Olea europaea HOM05D003277 ORTHO05D003275 7.0e-20 100.9 117 49.6
Oeu063976.1 Olea europaea HOM05D003277 ORTHO05D003275 7.0e-20 100.9 117 49.6
Ciclev10026796m.g Citrus clementina HOM05D003277 ORTHO05D003275 4.5e-19 98.2 117 46.2
Cc04_g03410 Coffea canephora HOM05D003277 ORTHO05D003275 1.3e-18 96.7 118 47.5
CSS0031837 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 5.0e-18 94.7 118 47.5
Cc02_g27850 Coffea canephora HOM05D003277 ORTHO05D003275 5.0e-18 94.7 100 50.0
SGA_v2.0_scaffold5G02589 Striga asiatica HOM05D003277 ORTHO05D003275 1.5e-17 93.2 115 47.0
Potri.003G055100 Populus trichocarpa HOM05D003277 ORTHO05D003275 1.9e-17 92.8 111 46.8
Thecc.06G088500 Theobroma cacao HOM05D003277 ORTHO05D003275 5.5e-17 91.3 109 44.0
Actinidia32754 Actinidia chinensis HOM05D003277 ORTHO05D003275 9.4e-17 90.5 114 43.9
Potri.001G180500 Populus trichocarpa HOM05D003277 ORTHO05D003275 1.2e-16 90.1 112 42.9
Migut.D01029 Erythranthe guttata HOM05D003277 ORTHO05D003275 1.6e-16 89.7 114 45.6
Manes.11G047000 Manihot esculenta HOM05D003277 ORTHO05D003275 2.1e-16 89.4 113 46.9
Manes.04G123700 Manihot esculenta HOM05D003277 ORTHO05D003275 2.7e-16 89.0 112 47.3
COL.COLO4_30383 Corchorus olitorius HOM05D003277 ORTHO05D003275 3.6e-16 88.6 98 49.0
Duzib235G0396 Durio zibethinus HOM05D003277 ORTHO05D003275 3.6e-16 88.6 109 45.9
Nn2g11767 Nelumbo nucifera HOM05D003277 ORTHO05D003275 6.1e-16 87.8 114 42.1
Atru.chr1.3275 Acer truncatum HOM05D003277 ORTHO05D003275 1.4e-15 86.7 115 44.3
FAN26G0013 Fragaria x ananassa HOM05D003277 ORTHO05D003275 1.4e-15 86.7 96 49.0
Nn8g39213 Nelumbo nucifera HOM05D003277 ORTHO05D003275 3.0e-15 85.5 115 42.6
TAR624G0051 Trochodendron aralioides HOM05D003277 ORTHO05D003275 5.2e-15 84.7 114 43.0
CSS0013613 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 8.8e-15 84.0 99 51.5
CSS0048107 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 1.5e-14 83.2 107 50.5
QL05p023505 Quercus lobata HOM05D003277 ORTHO05D003275 1.5e-14 83.2 116 44.8
FAN28G0377 Fragaria x ananassa HOM05D000750 ORTHO05D000714 2.0e-14 82.8 117 44.4
FvH4_1g05060 Fragaria vesca HOM05D003277 ORTHO05D003275 2.6e-14 82.4 96 46.9
FAN19G2424 Fragaria x ananassa HOM05D000750 ORTHO05D000714 2.6e-14 82.4 96 46.9
FAN23G0772 Fragaria x ananassa HOM05D000750 ORTHO05D000714 4.4e-14 81.6 96 47.9
Prupe.7G229300 Prunus persica HOM05D003277 ORTHO05D003275 5.7e-14 81.3 93 43.0
Sabra01G0146300 Salix brachista HOM05D003277 ORTHO05D003275 7.5e-14 80.9 91 49.5
Rhsim08G0221600 Rhododendron simsii HOM05D003277 ORTHO05D003275 1.3e-13 80.1 115 44.3
QL02p085574 Quercus lobata HOM05D003277 ORTHO05D003275 1.7e-13 79.7 93 44.1
Glyma.05G231600 Glycine max HOM05D003277 ORTHO05D003275 2.8e-13 79.0 100 46.0
Haze_16418 Corylus avellana HOM05D003277 ORTHO05D003275 3.7e-13 78.6 92 46.7
Haze_16415 Corylus avellana HOM05D003277 ORTHO05D003275 4.8e-13 78.2 116 40.5
Prupe.3G070700 Prunus persica HOM05D003277 ORTHO05D003275 4.8e-13 78.2 75 56.0
Gohir.D05G129700 Gossypium hirsutum HOM05D003277 ORTHO05D003275 6.3e-13 77.8 76 53.9
vmacro18910 Vaccinium macrocarpon HOM05D003277 ORTHO05D003275 6.3e-13 77.8 110 48.2
Gorai.009G133500 Gossypium raimondii HOM05D003277 ORTHO05D003275 1.1e-12 77.0 69 58.0
Thecc.09G038300 Theobroma cacao HOM05D003277 ORTHO05D003275 1.1e-12 77.0 92 47.8
Gohir.A05G130300 Gossypium hirsutum HOM05D003277 ORTHO05D003275 2.4e-12 75.9 69 58.0
Aqoxy7G01700 Aquilegia oxysepala HOM05D003277 ORTHO05D003275 3.1e-12 75.5 109 39.4
Phvul.002G313800 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 4.1e-12 75.1 109 40.4
SalBow2G2751 Salvia bowleyana HOM05D003277 ORTHO05D003275 4.1e-12 75.1 113 41.6
Duzib150G0682 Durio zibethinus HOM05D003277 ORTHO05D003275 5.4e-12 74.7 112 40.2
VMungo0251G2336 Vigna mungo HOM05D003277 ORTHO05D003275 5.4e-12 74.7 110 41.8
vmacro18909 Vaccinium macrocarpon HOM05D003277 ORTHO05D003275 9.1e-12 73.9 119 40.3
VMungo1080G1196 Vigna mungo HOM05D003111 ORTHO05D003502 9.1e-12 73.9 75 48.0
MBI04_g08935_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 1.6e-11 73.2 102 41.2
Haze_25704 Corylus avellana HOM05D000750 ORTHO05D000714 2.0e-11 72.8 96 44.8
Rhsim12G0198400 Rhododendron simsii HOM05D000062 ORTHO05D014675 2.0e-11 72.8 108 42.6
COL.COLO4_34902 Corchorus olitorius HOM05D003277 ORTHO05D003275 2.7e-11 72.4 117 37.6
Duzib150G1012 Durio zibethinus HOM05D000818 ORTHO05D003275 2.7e-11 72.4 100 45.0
MD17G1194700 Malus domestica HOM05D003277 ORTHO05D003275 2.7e-11 72.4 73 54.8
Cfa002072 Carpinus fangiana HOM05D003277 ORTHO05D003275 3.5e-11 72.0 117 38.5
Lsat_1_v5_gn_5_130221 Lactuca sativa HOM05D003277 ORTHO05D003275 3.5e-11 72.0 87 43.7
Cfa003268 Carpinus fangiana HOM05D003277 ORTHO05D003275 5.9e-11 71.2 107 40.2
Glyma.15G014600 Glycine max HOM05D003277 ORTHO05D003275 5.9e-11 71.2 71 50.7
Glyma.13G359300 Glycine max HOM05D003277 ORTHO05D003275 7.7e-11 70.9 72 50.0
arahy.Tifrunner.gnm1.ann1.R7R2S9 Arachis hypogaea HOM05D003277 ORTHO05D003275 1.0e-10 70.5 113 37.2
CANSAT56G1808 Cannabis sativa HOM05D003277 ORTHO05D003275 1.0e-10 70.5 79 48.1
Dinv36618 Davidia involucrata HOM05D003277 ORTHO05D003275 1.3e-10 70.1 111 38.7
CsaV3_3G047340 Cucumis sativus L. HOM05D002580 ORTHO05D002811 1.7e-10 69.7 96 39.6
Glyma.07G087300 Glycine max HOM05D003277 ORTHO05D003275 1.7e-10 69.7 83 44.6
Phvul.005G171100 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 2.3e-10 69.3 72 48.6
Atru.chr7.2298 Acer truncatum HOM05D003277 ORTHO05D003275 2.9e-10 68.9 74 50.0
Gohir.D07G027850 Gossypium hirsutum HOM05D003277 ORTHO05D003275 2.9e-10 68.9 94 45.7
Gorai.001G029100 Gossypium raimondii HOM05D003277 ORTHO05D003275 2.9e-10 68.9 94 45.7
Thecc.09G112200 Theobroma cacao HOM05D003277 ORTHO05D003275 2.9e-10 68.9 115 38.3
Actinidia08979 Actinidia chinensis HOM05D005698 ORTHO05D007022 3.8e-10 68.6 76 46.1
HanXRQChr10g0313381 Helianthus annuus HOM05D003277 ORTHO05D003275 5.0e-10 68.2 99 41.4
Manes.16G066800 Manihot esculenta HOM05D003277 ORTHO05D003275 5.0e-10 68.2 118 36.4
Gohir.A07G024250 Gossypium hirsutum HOM05D003277 ORTHO05D003275 6.6e-10 67.8 94 44.7
Lj3g0000153 Lotus japonicus HOM05D003277 ORTHO05D003275 6.6e-10 67.8 99 42.4
CANSAT56G3518 Cannabis sativa HOM05D003277 ORTHO05D003275 8.6e-10 67.4 121 38.8
Gohir.D05G051000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.1e-09 67.0 103 43.7
Gorai.009G052600 Gossypium raimondii HOM05D003277 ORTHO05D003275 1.1e-09 67.0 103 43.7
FvH4_2g36280 Fragaria vesca HOM05D003277 ORTHO05D003275 1.9e-09 66.2 92 45.7
FAN15G2136 Fragaria x ananassa HOM05D003277 ORTHO05D003275 1.9e-09 66.2 92 45.7
FAN27G2228 Fragaria x ananassa HOM05D003277 ORTHO05D003275 1.9e-09 66.2 92 45.7
Gohir.A05G049100 Gossypium hirsutum HOM05D003277 ORTHO05D003275 2.5e-09 65.9 103 43.7
Medtr8g083490 Medicago truncatula HOM05D003277 ORTHO05D003275 2.5e-09 65.9 100 38.0
Glyma.04G079300 Glycine max HOM05D003277 ORTHO05D003275 3.3e-09 65.5 110 36.4
TPR.G12111 Trifolium pratense HOM05D003277 ORTHO05D003275 3.3e-09 65.5 102 42.2
EL10Ac2g02521 Beta vulgaris HOM05D003277 ORTHO05D003275 4.2e-09 65.1 130 34.6
FAN20G0113 Fragaria x ananassa HOM05D003277 ORTHO05D003275 4.2e-09 65.1 92 45.7
Lalb_Chr23g0269371 Lupinus albus HOM05D003277 ORTHO05D003275 4.2e-09 65.1 98 38.8
RcHm_v2.0_Chr6g0305601 Rosa chinensis HOM05D003277 ORTHO05D003275 5.5e-09 64.7 75 49.3
Hma1.2p1_0018F.1_g013430 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 7.2e-09 64.3 90 40.0
ClCG11G013950 Citrullus lanatus HOM05D003277 ORTHO05D003275 9.5e-09 63.9 103 37.9
Glyma.06G080800 Glycine max HOM05D003277 ORTHO05D003275 9.5e-09 63.9 97 38.1
Lalb_Chr25g0279671 Lupinus albus HOM05D003277 ORTHO05D003275 9.5e-09 63.9 70 45.7
Manes.03G064500 Manihot esculenta HOM05D003277 ORTHO05D003275 9.5e-09 63.9 70 50.0
Manes.03G064940 Manihot esculenta HOM05D003277 ORTHO05D003275 9.5e-09 63.9 70 50.0
Phvul.009G105000 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 9.5e-09 63.9 90 38.9
Sabra06G0191100 Salix brachista HOM05D003277 ORTHO05D003275 9.5e-09 63.9 95 43.2
MELO3C003594.2 Cucumis melo HOM05D003277 ORTHO05D003275 1.2e-08 63.5 103 36.9
COL.COLO4_18709 Corchorus olitorius HOM05D003277 ORTHO05D003275 1.6e-08 63.2 100 41.0
Gorai.001G004600 Gossypium raimondii HOM05D003277 ORTHO05D003275 1.6e-08 63.2 114 35.1
Haze_21824 Corylus avellana HOM05D003277 ORTHO05D003275 2.1e-08 62.8 73 46.6
PSO210G7254 Papaver somniferum HOM05D002095 ORTHO05D002058 2.1e-08 62.8 84 42.9
RcHm_v2.0_Chr2g0090671 Rosa chinensis HOM05D003277 ORTHO05D003275 2.1e-08 62.8 59 59.3
Cfa013333 Carpinus fangiana HOM05D003277 ORTHO05D003275 2.8e-08 62.4 73 45.2
CsaV3_1G030570 Cucumis sativus L. HOM05D003277 ORTHO05D003275 2.8e-08 62.4 90 40.0
MBI01_g34157_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 2.8e-08 62.4 106 37.7
Phvul.004G162400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 2.8e-08 62.4 73 41.1
RcHm_v2.0_Chr2g0137921 Rosa chinensis HOM05D003277 ORTHO05D003275 2.8e-08 62.4 80 47.5
ATR1120G137 Amborella trichopoda HOM05D003277 ORTHO05D003275 3.6e-08 62.0 97 42.3
Phvul.010G150400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 3.6e-08 62.0 71 45.1
VMungo0331G0823 Vigna mungo HOM05D003277 ORTHO05D003275 3.6e-08 62.0 70 45.7
AUR62011006 Chenopodium quinoa HOM05D000030 ORTHO05D000009 4.7e-08 61.6 110 38.2
Potri.006G244200 Populus trichocarpa HOM05D003277 ORTHO05D003275 4.7e-08 61.6 89 47.2
Ca_15626_v3 Cicer arietinum L. HOM05D003277 ORTHO05D003275 6.1e-08 61.2 109 37.6
Glyma.08G206600 Glycine max HOM05D003277 ORTHO05D003275 6.1e-08 61.2 71 45.1
Gohir.A07G006900 Gossypium hirsutum HOM05D003277 ORTHO05D003275 8.0e-08 60.8 121 33.1
RhsimUnG0085500 Rhododendron simsii HOM05D003277 ORTHO05D003275 8.0e-08 60.8 101 42.6
ATR1120G160 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.0e-07 60.5 98 40.8
Glyma.07G006000 Glycine max HOM05D003277 ORTHO05D003275 1.0e-07 60.5 71 43.7
Sed0006476 Sechium edule HOM05D003277 ORTHO05D003275 1.0e-07 60.5 92 42.4
ATR1120G144 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.4e-07 60.1 69 49.3
Glyma.14G140500 Glycine max HOM05D003277 ORTHO05D003275 1.4e-07 60.1 87 46.0
Psat0s1478g0280 Pisum sativum HOM05D003277 ORTHO05D003275 1.8e-07 59.7 95 37.9
Sc09g0008990 Simmondsia chinensis HOM05D003277 ORTHO05D003275 1.8e-07 59.7 115 34.8
ATR1120G187 Amborella trichopoda HOM05D003277 ORTHO05D003275 2.3e-07 59.3 89 43.8
Lalb_Chr04g0262701 Lupinus albus HOM05D003277 ORTHO05D003275 2.3e-07 59.3 63 49.2
Psat7g252160 Pisum sativum HOM05D003277 ORTHO05D003275 2.3e-07 59.3 106 38.7
Lalb_Chr04g0262721 Lupinus albus HOM05D003277 ORTHO05D003275 4.0e-07 58.5 61 52.5
Manes.16G117100 Manihot esculenta HOM05D003277 ORTHO05D003275 4.0e-07 58.5 111 35.1
Medtr4g012510 Medicago truncatula HOM05D003277 ORTHO05D003275 4.0e-07 58.5 110 37.3
Prupe.1G454200 Prunus persica HOM05D003277 ORTHO05D003275 4.0e-07 58.5 94 43.6
PGSC0003DMG400000320 Solanum tuberosum HOM05D003277 ORTHO05D003275 4.0e-07 58.5 78 41.0
TPR.G24192 Trifolium pratense HOM05D003277 ORTHO05D003275 4.0e-07 58.5 63 54.0
MELO3C029688.2 Cucumis melo HOM05D003277 ORTHO05D003275 5.2e-07 58.2 89 38.2
Gohir.D07G005000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 6.8e-07 57.8 70 47.1
Medtr4g012460 Medicago truncatula HOM05D003277 ORTHO05D003275 6.8e-07 57.8 64 51.6
Carub.0003s1575 Capsella rubella HOM05D015723 ORTHO05D003275 8.9e-07 57.4 70 45.7
DCAR_021143 Daucus carota HOM05D003277 ORTHO05D003275 8.9e-07 57.4 73 41.1
Psat7g252120 Pisum sativum HOM05D003277 ORTHO05D003275 8.9e-07 57.4 62 53.2
QL12p026142 Quercus lobata HOM05D003277 ORTHO05D003275 8.9e-07 57.4 90 41.1
Psat7g251800 Pisum sativum HOM05D003277 ORTHO05D003275 1.2e-06 57.0 73 47.9
TPR.G39760 Trifolium pratense HOM05D003277 ORTHO05D003275 1.2e-06 57.0 68 50.0
HPP92_002801 Vanilla planifolia HOM05D003277 ORTHO05D003275 1.2e-06 57.0 110 33.6
ATR1120G013 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.5e-06 56.6 68 48.5
Potri.018G036300 Populus trichocarpa HOM05D003277 ORTHO05D003275 1.5e-06 56.6 67 47.8
TPR.G27852 Trifolium pratense HOM05D003277 ORTHO05D003275 1.5e-06 56.6 104 37.5
Atru.chr7.1333 Acer truncatum HOM05D003277 ORTHO05D003275 2.0e-06 56.2 105 39.0
Ca_01117_v3 Cicer arietinum L. HOM05D003111 ORTHO05D003502 2.0e-06 56.2 70 47.1
Solyc12g007040.3 Solanum lycopersicum HOM05D003277 ORTHO05D003275 2.0e-06 56.2 76 40.8
Peaxi162Scf00546g00117 Petunia axillaris HOM05D003277 ORTHO05D003275 2.6e-06 55.8 84 38.1
Zm00001eb337590 Zea mays HOM05D003277 ORTHO05D003275 2.6e-06 55.8 69 46.4
arahy.Tifrunner.gnm1.ann1.YJAD7Q Arachis hypogaea HOM05D003277 ORTHO05D003275 3.4e-06 55.5 69 47.8
Sc08g0007380 Simmondsia chinensis HOM05D003277 ORTHO05D003275 3.4e-06 55.5 97 33.0
Zm00001eb122140 Zea mays HOM05D003277 ORTHO05D003275 3.4e-06 55.5 70 44.3
Cpa.g.sc205.7 Carica papaya HOM05D003277 ORTHO05D003275 4.4e-06 55.1 71 46.5
CiPaw.08G022600 Carya illinoinensis HOM05D003277 ORTHO05D003275 4.4e-06 55.1 89 41.6
Medtr3g109430 Medicago truncatula HOM05D003277 ORTHO05D003275 4.4e-06 55.1 102 36.3
Psat7g252200 Pisum sativum HOM05D003277 ORTHO05D003275 4.4e-06 55.1 63 49.2
vmacro20693 Vaccinium macrocarpon HOM05D010253 ORTHO05D015231 4.4e-06 55.1 79 41.8
Sp3g14370 Schrenkiella parvula HOM05D015723 ORTHO05D003275 5.7e-06 54.7 66 43.9
Psat7g251560 Pisum sativum HOM05D003277 ORTHO05D003275 7.5e-06 54.3 61 50.8
Psat7g251680 Pisum sativum HOM05D003277 ORTHO05D003275 7.5e-06 54.3 85 41.2
HPP92_008676 Vanilla planifolia HOM05D003277 ORTHO05D003275 7.5e-06 54.3 64 50.0
DCAR_010449 Daucus carota HOM05D003277 ORTHO05D003275 9.8e-06 53.9 77 39.0
Psat7g251640 Pisum sativum HOM05D003277 ORTHO05D003275 9.8e-06 53.9 85 42.4


User provided reference genes

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