Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 8.6e-74 280.4 160 100.0
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 7.0e-68 260.8 160 81.2
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 6.0e-67 257.7 160 80.0
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 3.0e-66 255.4 160 78.8
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 9.5e-65 250.4 160 76.9
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.6e-64 249.6 160 78.8
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 1.8e-55 219.5 160 83.1
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 1.2e-46 190.3 161 64.6
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 2.0e-46 189.5 161 60.2
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 2.0e-46 189.5 160 68.8
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 4.4e-46 188.3 160 71.9
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 1.3e-45 186.8 160 65.0
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 1.7e-45 186.4 160 60.0
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 6.4e-45 184.5 160 60.0
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 1.1e-44 183.7 164 69.5
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 1.1e-44 183.7 164 69.5
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 1.1e-44 183.7 164 69.5
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 3.2e-44 182.2 160 65.6
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 4.2e-44 181.8 160 64.4
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 5.4e-44 181.4 160 59.4
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 7.1e-44 181.0 151 66.9
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.2e-43 180.3 180 55.6
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 2.1e-43 179.5 144 63.9
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 7.8e-43 177.6 161 73.3
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 1.0e-42 177.2 156 56.4
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 3.0e-42 175.6 162 60.5
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 3.0e-42 175.6 160 51.9
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 3.9e-42 175.3 161 66.5
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 3.9e-42 175.3 157 54.1
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 5.1e-42 174.9 161 72.7
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 1.5e-41 173.3 160 67.5
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 1.9e-41 172.9 136 62.5
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 4.3e-41 171.8 160 55.0
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 4.3e-41 171.8 139 74.8
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 4.3e-41 171.8 160 67.5
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 5.6e-41 171.4 152 55.3
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 1.6e-40 169.9 160 53.8
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 1.6e-40 169.9 160 53.8
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 2.1e-40 169.5 163 62.0
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 2.8e-40 169.1 160 54.4
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 2.8e-40 169.1 159 65.4
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 4.7e-40 168.3 160 54.4
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 4.7e-40 168.3 140 59.3
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 6.2e-40 167.9 161 68.3
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 8.1e-40 167.5 139 59.0
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 8.1e-40 167.5 163 60.7
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 8.1e-40 167.5 160 60.6
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 8.1e-40 167.5 160 58.1
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 8.1e-40 167.5 103 70.9
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 1.1e-39 167.2 161 52.8
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.1e-39 167.2 161 62.7
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 1.4e-39 166.8 120 65.0
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 1.8e-39 166.4 159 60.4
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 1.8e-39 166.4 157 54.1
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 2.4e-39 166.0 161 67.7
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 2.4e-39 166.0 160 51.9
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 3.1e-39 165.6 160 53.1
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 3.1e-39 165.6 160 53.8
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 3.1e-39 165.6 142 72.5
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 3.1e-39 165.6 165 68.5
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 4.0e-39 165.2 160 53.8
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 5.3e-39 164.9 160 62.5
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 5.3e-39 164.9 160 60.0
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 6.9e-39 164.5 103 70.9
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 9.0e-39 164.1 160 53.1
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 1.2e-38 163.7 159 54.1
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 1.2e-38 163.7 160 60.0
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 1.2e-38 163.7 161 54.7
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 1.2e-38 163.7 156 64.1
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 1.5e-38 163.3 147 67.3
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 1.5e-38 163.3 141 59.6
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 2.0e-38 162.9 150 53.3
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 3.4e-38 162.2 103 74.8
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 3.4e-38 162.2 103 69.9
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 3.4e-38 162.2 160 55.6
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 4.4e-38 161.8 136 57.4
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 4.4e-38 161.8 141 67.4
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 5.8e-38 161.4 142 54.9
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 7.6e-38 161.0 157 52.2
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 7.6e-38 161.0 97 74.2
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 7.6e-38 161.0 140 71.4
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 7.6e-38 161.0 157 54.8
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 9.9e-38 160.6 156 62.8
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 9.9e-38 160.6 103 68.9
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 9.9e-38 160.6 161 52.8
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 1.3e-37 160.2 140 70.7
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 1.3e-37 160.2 162 51.2
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 1.7e-37 159.8 103 67.0
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 2.2e-37 159.5 160 51.9
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 2.2e-37 159.5 136 56.6
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 2.9e-37 159.1 138 71.0
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 2.9e-37 159.1 145 67.6
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 3.8e-37 158.7 162 63.0
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 3.8e-37 158.7 134 73.9
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 4.9e-37 158.3 103 74.8
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 6.4e-37 157.9 93 72.0
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 8.4e-37 157.5 90 73.3
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 2.4e-36 156.0 160 60.0
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 2.4e-36 156.0 160 62.5
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 3.2e-36 155.6 139 56.1
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 4.2e-36 155.2 141 53.9
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 4.2e-36 155.2 91 71.4
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 1.6e-35 153.3 103 70.9
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 1.6e-35 153.3 151 51.7
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 4.6e-35 151.8 162 63.0
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 7.8e-35 151.0 136 55.9
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 2.3e-34 149.4 133 68.4
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 2.3e-34 149.4 157 61.1
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 3.9e-34 148.7 159 58.5
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 7.3e-33 144.4 167 50.9
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 7.3e-33 144.4 78 78.2
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 3.1e-31 139.0 162 45.7
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 4.0e-31 138.7 135 67.4
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 6.4e-29 131.3 165 49.7
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 2.4e-28 129.4 170 44.7
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 2.7e-27 125.9 79 68.4
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 4.6e-27 125.2 79 68.4
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 1.1e-25 120.6 109 72.5
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 1.9e-25 119.8 112 72.3
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 1.9e-25 119.8 83 65.1
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 4.3e-25 118.6 138 49.3
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 1.3e-24 117.1 85 63.5
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 1.4e-23 113.6 93 55.9
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 5.3e-23 111.7 97 78.4
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 2.6e-22 109.4 53 79.2
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 5.1e-18 95.1 88 46.6
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 1.1e-17 94.0 160 36.9
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 1.1e-17 94.0 162 48.1
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 1.9e-17 93.2 52 73.1
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 5.6e-17 91.7 136 39.7
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 7.4e-17 91.3 103 44.7
BraA10t43707Z Brassica rapa HOM05D005372 ORTHO05D006593 3.7e-16 89.0 65 63.1
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 8.2e-16 87.8 77 49.4
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 2.6e-14 82.8 43 81.4
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 3.4e-14 82.4 38 89.5
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 1.9e-12 76.6 83 43.4
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 7.9e-11 71.2 37 86.5
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 8.7e-10 67.8 75 41.3
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 1.9e-09 66.6 43 60.5
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 4.3e-09 65.5 42 61.9
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 3.7e-08 62.4 39 66.7
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 1.4e-07 60.5 47 57.4


User provided reference genes

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