Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 1.2e-166 589.7 298 100.0
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 2.8e-150 535.4 298 91.3
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 1.5e-148 529.6 298 90.6
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 5.7e-148 527.7 298 89.9
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 1.1e-143 513.5 298 85.2
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 4.7e-142 508.1 296 86.5
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 2.4e-138 495.7 285 87.7
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 4.1e-122 441.8 280 78.2
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 5.1e-120 434.9 297 75.1
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 2.5e-119 432.6 280 77.1
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 5.6e-119 431.4 297 73.1
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 6.2e-118 427.9 297 73.4
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 8.1e-118 427.6 299 74.2
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 1.4e-117 426.8 256 82.0
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 1.8e-117 426.4 299 72.6
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 2.4e-117 426.0 297 74.1
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 1.5e-116 423.3 297 72.1
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 9.9e-116 420.6 297 71.7
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 9.9e-116 420.6 297 71.7
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 1.7e-115 419.9 297 72.4
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 8.4e-115 417.5 299 71.9
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 2.4e-114 416.0 303 70.3
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 4.2e-114 415.2 297 71.0
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 1.6e-113 413.3 297 71.0
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 2.1e-113 412.9 297 70.7
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 4.6e-113 411.8 297 70.7
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 6.0e-113 411.4 298 70.8
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 1.7e-112 409.8 302 69.5
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 5.1e-112 408.3 297 70.4
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 5.1e-112 408.3 297 69.7
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 8.7e-112 407.5 298 70.8
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 8.7e-112 407.5 297 70.0
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 1.1e-111 407.1 299 69.6
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 9.6e-111 404.1 287 71.4
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 9.6e-111 404.1 297 69.7
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 2.1e-110 402.9 297 69.7
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 4.8e-110 401.7 298 70.5
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 6.2e-110 401.4 272 74.3
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 8.1e-110 401.0 297 69.7
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 6.9e-109 397.9 272 72.1
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 9.0e-109 397.5 273 72.2
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 1.2e-108 397.1 297 67.3
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.5e-108 396.7 297 67.3
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.5e-108 396.7 297 69.0
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 1.5e-108 396.7 321 65.1
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 2.0e-108 396.4 281 71.5
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 3.4e-108 395.6 282 70.2
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 3.4e-108 395.6 297 68.7
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 4.4e-108 395.2 288 67.7
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 9.9e-108 394.0 297 66.7
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 2.2e-107 392.9 297 66.7
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 3.8e-107 392.1 253 77.5
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 3.8e-107 392.1 246 77.2
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 3.8e-107 392.1 298 65.4
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 4.9e-107 391.7 297 67.0
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 1.1e-106 390.6 253 77.9
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 2.4e-106 389.4 298 66.4
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 7.1e-106 387.9 298 67.4
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 1.6e-105 386.7 297 67.3
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 3.5e-105 385.6 298 66.8
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 3.5e-105 385.6 245 76.7
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 3.5e-105 385.6 297 67.7
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 4.6e-105 385.2 279 68.5
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 4.6e-105 385.2 256 75.0
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 6.0e-105 384.8 250 74.8
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 1.7e-104 383.3 300 65.3
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 2.3e-104 382.9 288 68.4
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 3.0e-104 382.5 297 66.7
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 5.1e-104 381.7 228 78.9
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 8.7e-104 380.9 312 66.0
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 1.5e-103 380.2 297 65.7
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 1.5e-103 380.2 259 72.2
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 2.5e-103 379.4 298 65.4
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 5.6e-103 378.3 300 68.3
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 1.3e-102 377.1 308 64.6
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 3.6e-102 375.6 256 72.3
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 3.6e-102 375.6 228 80.3
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 8.1e-102 374.4 255 71.4
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 8.1e-102 374.4 256 71.1
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 1.8e-101 373.2 257 70.8
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 1.8e-101 373.2 297 64.3
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 3.1e-101 372.5 256 70.7
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 3.1e-101 372.5 256 70.7
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 3.1e-101 372.5 298 65.8
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 3.1e-101 372.5 256 71.1
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 4.0e-101 372.1 256 71.1
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 5.3e-101 371.7 256 70.7
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 5.3e-101 371.7 256 70.7
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 5.3e-101 371.7 256 70.7
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 5.3e-101 371.7 257 70.8
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 6.9e-101 371.3 255 71.0
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 5.8e-100 368.2 223 79.8
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 9.9e-100 367.5 273 68.1
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 3.8e-99 365.5 290 65.5
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 8.4e-99 364.4 297 64.0
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 1.1e-98 364.0 368 56.0
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 2.4e-98 362.8 219 80.4
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 3.2e-98 362.5 256 68.4
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 9.3e-98 360.9 220 78.2
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 2.1e-97 359.8 297 62.6
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 1.0e-96 357.5 297 62.6
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.1e-95 354.0 297 64.0
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 1.1e-95 354.0 297 64.3
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 5.6e-95 351.7 289 65.7
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.3e-94 350.5 426 50.7
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 1.3e-94 350.5 242 71.5
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 1.6e-94 350.1 236 71.6
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 6.9e-93 344.7 305 59.7
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 3.8e-91 339.0 287 61.7
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 4.2e-90 335.5 223 72.6
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 1.2e-89 334.0 297 58.6
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 6.0e-89 331.6 201 79.1
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 1.5e-87 327.0 213 75.1
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 5.7e-87 325.1 282 60.6
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 6.3e-86 321.6 280 62.1
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 1.3e-83 313.9 226 66.4
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 2.2e-83 313.2 224 69.6
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 5.0e-83 312.0 221 70.1
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 9.3e-82 307.8 226 66.8
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 2.1e-81 306.6 260 64.6
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 1.3e-78 297.4 213 67.6
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 8.2e-78 294.7 223 61.9
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 3.1e-77 292.7 207 71.0
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 1.6e-73 280.4 219 63.0
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 1.0e-67 261.2 255 51.8
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 1.8e-64 250.4 230 58.3
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 2.3e-64 250.0 290 50.7
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 7.4e-63 245.0 132 88.6
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 9.7e-63 244.6 140 82.1
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 8.2e-62 241.5 140 82.9
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 9.1e-61 238.0 216 55.1
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 7.2e-58 228.4 236 48.3
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 2.1e-57 226.9 220 50.9
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 8.5e-51 204.9 157 70.1
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 2.7e-49 199.9 234 44.4
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 8.0e-49 198.4 241 43.2
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 4.0e-48 196.1 234 43.6
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 5.7e-47 192.2 161 61.5
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 2.0e-44 183.7 163 60.1
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 7.7e-44 181.8 169 58.6
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 1.5e-42 177.6 110 76.4
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 8.0e-41 171.8 138 65.9
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.2e-36 157.9 97 79.4
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 7.7e-36 155.2 109 64.2
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 2.5e-34 150.2 97 77.3
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 1.7e-30 137.5 107 69.2
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 1.5e-26 124.4 92 68.5
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 1.9e-26 124.0 81 75.3
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 2.9e-22 110.2 157 45.9
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 4.9e-22 109.4 67 77.6
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 3.3e-18 96.7 77 59.7


User provided reference genes

Program Settings