Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G394.3 Capsicum annuum HOM05D004534 ORTHO05D005413 2.7e-222 775.0 384 100.0
Solyc06g075540.3 Solanum lycopersicum HOM05D004534 ORTHO05D005413 4.7e-195 684.5 382 89.5
PGSC0003DMG402006611 Solanum tuberosum HOM05D004534 ORTHO05D005413 8.1e-195 683.7 384 89.3
Nitab4.5_0000270g0130 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.8e-194 682.6 380 90.8
Nitab4.5_0004774g0020 Nicotiana tabacum HOM05D004534 ORTHO05D005413 4.6e-182 641.3 368 86.7
Peaxi162Scf00072g00025 Petunia axillaris HOM05D004534 ORTHO05D005413 3.2e-175 618.6 344 87.8
Dinv32819 Davidia involucrata HOM05D004534 ORTHO05D005413 6.1e-150 534.6 389 72.5
Rhsim01G0222900 Rhododendron simsii HOM05D004534 ORTHO05D005413 8.7e-149 530.8 390 70.8
CANSAT54G1456 Cannabis sativa HOM05D004534 ORTHO05D005413 6.3e-147 524.6 376 70.2
Hma1.2p1_2042F.1_g312230 Hydrangea macrophylla HOM05D004534 ORTHO05D005413 6.3e-147 524.6 374 72.5
MSTRG.18620 Avicennia marina HOM05D004534 ORTHO05D005413 8.2e-147 524.2 382 69.1
Manes.11G138500 Manihot esculenta HOM05D004534 ORTHO05D005413 5.9e-145 518.1 365 71.2
Cc01_g11880 Coffea canephora HOM05D004534 ORTHO05D005413 1.0e-144 517.3 392 68.4
RcHm_v2.0_Chr5g0061761 Rosa chinensis HOM05D004534 ORTHO05D005413 1.0e-144 517.3 388 67.0
CSS0009646 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 2.9e-144 515.8 391 68.0
Migut.D02166 Erythranthe guttata HOM05D004534 ORTHO05D005413 8.5e-144 514.2 383 68.4
GSVIVG01025090001 Vitis vinifera HOM05D004534 ORTHO05D005413 1.4e-143 513.5 385 68.8
Cpa.g.sc139.34 Carica papaya HOM05D004534 ORTHO05D005413 2.5e-143 512.7 386 66.3
Atru.chr3.3749 Acer truncatum HOM05D004534 ORTHO05D005413 5.5e-143 511.5 381 69.3
Aqoxy4G03153 Aquilegia oxysepala HOM05D004534 ORTHO05D005413 1.1e-140 503.8 385 67.3
FvH4_3g34110 Fragaria vesca HOM05D004534 ORTHO05D005413 1.5e-140 503.4 390 66.2
QL01p035546 Quercus lobata HOM05D004534 ORTHO05D005413 1.5e-140 503.4 380 70.0
Ciclev10030338m.g Citrus clementina HOM05D004534 ORTHO05D005413 2.0e-140 503.1 390 67.4
FAN11G3381 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.5e-140 502.7 390 66.2
Nn2g10612 Nelumbo nucifera HOM05D004534 ORTHO05D005413 2.5e-140 502.7 384 66.9
GSVIVG01016358001 Vitis vinifera HOM05D004534 ORTHO05D005413 7.4e-140 501.1 352 69.6
Cfa011397 Carpinus fangiana HOM05D004534 ORTHO05D005413 9.7e-140 500.7 344 72.4
MD11G1120100 Malus domestica HOM05D004534 ORTHO05D005413 9.7e-140 500.7 384 68.0
TWI31G1398 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 1.3e-139 500.4 350 70.0
Actinidia03016 Actinidia chinensis HOM05D004534 ORTHO05D005413 2.8e-139 499.2 375 68.3
Prupe.2G220600 Prunus persica HOM05D004534 ORTHO05D005413 3.7e-139 498.8 369 68.3
Lsat_1_v5_gn_8_20980 Lactuca sativa HOM05D004534 ORTHO05D005413 6.3e-139 498.0 341 69.8
CsaV3_1G012750 Cucumis sativus L. HOM05D004534 ORTHO05D005413 1.4e-138 496.9 380 66.1
CARHR149920 Cardamine hirsuta HOM05D004534 ORTHO05D005413 1.8e-138 496.5 372 66.1
MELO3C026849.2 Cucumis melo HOM05D004534 ORTHO05D005413 3.1e-138 495.7 350 69.1
Sed0013966 Sechium edule HOM05D004534 ORTHO05D005413 5.3e-138 495.0 350 68.6
vmacro14490 Vaccinium macrocarpon HOM05D004534 ORTHO05D005413 9.1e-138 494.2 449 61.0
Cfa001577 Carpinus fangiana HOM05D004534 ORTHO05D005413 1.5e-137 493.4 365 67.9
unitig_37.g12680 Utricularia gibba HOM05D004534 ORTHO05D005413 3.4e-137 492.3 346 70.2
HanXRQChr08g0219701 Helianthus annuus HOM05D004534 ORTHO05D005413 2.9e-136 489.2 380 66.8
DCAR_018857 Daucus carota HOM05D004534 ORTHO05D005413 3.8e-136 488.8 388 66.0
AT3G45740 Arabidopsis thaliana HOM05D004534 ORTHO05D005413 6.5e-136 488.0 358 67.9
Dinv31374 Davidia involucrata HOM05D004534 ORTHO05D005413 8.5e-136 487.6 347 69.2
ECA233G2770 Erigeron canadensis HOM05D004534 ORTHO05D000452 8.5e-136 487.6 371 66.3
AL5G24380 Arabidopsis lyrata HOM05D004534 ORTHO05D005413 1.1e-135 487.3 372 65.6
Glyma.13G330000 Glycine max HOM05D004534 ORTHO05D005413 1.4e-135 486.9 376 65.4
Thhalv10002577m.g Eutrema salsugineum HOM05D004534 ORTHO05D005413 2.5e-135 486.1 372 65.1
Haze_16951 Corylus avellana HOM05D004534 ORTHO05D005413 4.2e-135 485.3 384 64.8
RcHm_v2.0_Chr1g0364391 Rosa chinensis HOM05D004534 ORTHO05D005413 4.2e-135 485.3 359 66.9
PGR102G1844 Punica granatum HOM05D004534 ORTHO05D005413 7.2e-135 484.6 381 64.6
CSS0028612 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 9.4e-135 484.2 391 62.7
PSO384G4947 Papaver somniferum HOM05D004534 ORTHO05D005413 9.4e-135 484.2 342 68.7
Lalb_Chr24g0394391 Lupinus albus HOM05D004534 ORTHO05D005413 2.1e-134 483.0 360 66.7
Aa31LG4G14970 Aethionema arabicum HOM05D004534 ORTHO05D005413 3.6e-134 482.3 339 68.7
Lj3g0025326 Lotus japonicus HOM05D004534 ORTHO05D005413 3.6e-134 482.3 379 63.6
THA.LOC104814850 Tarenaya hassleriana HOM05D004534 ORTHO05D005413 3.6e-134 482.3 387 63.3
Psat5g281360 Pisum sativum HOM05D004534 ORTHO05D005413 4.7e-134 481.9 348 67.5
Phvul.L001232 Phaseolus vulgaris HOM05D004534 ORTHO05D005413 6.1e-134 481.5 363 67.2
Ciclev10031838m.g Citrus clementina HOM05D004534 ORTHO05D005413 7.9e-134 481.1 365 66.3
FAN21G3213 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.0e-133 480.7 397 62.7
arahy.Tifrunner.gnm1.ann1.AW7LWX Arachis hypogaea HOM05D004534 ORTHO05D005413 1.4e-133 480.3 369 65.6
CiPaw.01G277800 Carya illinoinensis HOM05D004534 ORTHO05D005413 1.4e-133 480.3 373 65.4
Thecc.10G065400 Theobroma cacao HOM05D004534 ORTHO05D005413 2.3e-133 479.6 352 66.5
arahy.Tifrunner.gnm1.ann1.NM19P7 Arachis hypogaea HOM05D004534 ORTHO05D005413 5.1e-133 478.4 347 68.0
ATR0582G124 Amborella trichopoda HOM05D004534 ORTHO05D005413 6.7e-133 478.0 355 67.3
PGR044G2491 Punica granatum HOM05D004534 ORTHO05D005413 6.7e-133 478.0 342 67.5
Migut.F02016 Erythranthe guttata HOM05D004534 ORTHO05D005413 2.0e-132 476.5 348 65.2
Potri.008G045700 Populus trichocarpa HOM05D004534 ORTHO05D005413 2.0e-132 476.5 367 65.4
Potri.010G216000 Populus trichocarpa HOM05D004534 ORTHO05D005413 2.6e-132 476.1 370 65.1
PSO339G4951 Papaver somniferum HOM05D004534 ORTHO05D005413 4.4e-132 475.3 385 63.6
TPR.G11635 Trifolium pratense HOM05D004534 ORTHO05D005413 5.7e-132 474.9 376 63.3
Medtr2g095830 Medicago truncatula HOM05D004534 ORTHO05D005413 1.7e-131 473.4 376 63.6
FAN06G4936 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.2e-131 473.0 385 61.6
Sp5g15770 Schrenkiella parvula HOM05D004534 ORTHO05D005413 1.8e-130 469.9 372 63.2
TWI38G2053 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 1.8e-130 469.9 349 66.8
Atru.chr12.616 Acer truncatum HOM05D004534 ORTHO05D005413 4.1e-130 468.8 393 61.3
BraA06t25216Z Brassica rapa HOM05D004534 ORTHO05D005413 4.1e-130 468.8 347 66.9
A06p21280 Brassica napus HOM05D004534 ORTHO05D005413 5.3e-130 468.4 347 66.9
Gorai.009G315700 Gossypium raimondii HOM05D004534 ORTHO05D005413 9.1e-130 467.6 357 63.0
HPP92_003600 Vanilla planifolia HOM05D004534 ORTHO05D005413 9.1e-130 467.6 372 63.7
COL.COLO4_23775 Corchorus olitorius HOM05D004534 ORTHO05D005413 1.2e-129 467.2 356 64.0
BolC3t19273H Brassica oleracea HOM05D004534 ORTHO05D005413 1.6e-129 466.8 346 65.6
Gohir.D05G298500 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.6e-129 466.8 358 63.7
BcaC01g01956 Brassica carinata HOM05D004534 ORTHO05D005413 3.5e-129 465.7 346 65.6
C03p70180 Brassica napus HOM05D004534 ORTHO05D005413 3.5e-129 465.7 346 65.6
Thecc.09G335300 Theobroma cacao HOM05D004534 ORTHO05D005413 1.3e-128 463.8 385 64.4
Oeu051854.2 Olea europaea HOM05D004534 ORTHO05D005413 6.5e-128 461.5 442 57.0
MD07G1181700 Malus domestica HOM05D004534 ORTHO05D005413 4.2e-127 458.8 328 68.9
Gohir.A08G000096 Gossypium hirsutum HOM05D004534 ORTHO05D005413 7.2e-127 458.0 383 63.4
Ca_01369_v3 Cicer arietinum L. HOM05D004534 ORTHO05D005413 2.1e-126 456.4 336 66.1
Gohir.D08G009000 Gossypium hirsutum HOM05D004534 ORTHO05D005413 2.7e-126 456.1 383 63.2
Zm00001eb397220 Zea mays HOM05D004534 ORTHO05D005413 1.0e-125 454.1 363 62.0
VMungo1080G0465 Vigna mungo HOM05D004534 ORTHO05D005413 4.4e-124 448.7 363 63.4
CSS0050279 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 5.7e-124 448.4 402 61.2
Os03g0284500 Oryza sativa ssp. japonica HOM05D004534 ORTHO05D005413 2.2e-123 446.4 359 61.3
CsaV3_5G026040 Cucumis sativus L. HOM05D004534 ORTHO05D005413 2.8e-123 446.0 369 62.6
Peaxi162Scf01024g00128 Petunia axillaris HOM05D004534 ORTHO05D005413 1.4e-122 443.7 389 60.9
EL10Ac7g15886 Beta vulgaris HOM05D004534 ORTHO05D005413 1.8e-122 443.4 435 56.3
FAN25G2491 Fragaria x ananassa HOM05D004534 ORTHO05D005413 4.5e-121 438.7 414 57.5
EL10Ac2g03539 Beta vulgaris HOM05D004534 ORTHO05D005413 6.5e-120 434.9 351 60.7
FAN03G3228 Fragaria x ananassa HOM05D004534 ORTHO05D005413 9.4e-119 431.0 385 57.7
AUR62009701 Chenopodium quinoa HOM05D004534 ORTHO05D005413 2.1e-118 429.9 345 64.1
BcaB01g01071 Brassica carinata HOM05D004534 ORTHO05D005413 1.8e-117 426.8 345 61.2
FAN01G1783 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.5e-116 423.7 388 56.4
Hund18962 Selenicereus undatus HOM05D004534 ORTHO05D005413 4.4e-116 422.2 384 59.4
CDE04G1344 Ceratophyllum demersum HOM05D004534 ORTHO05D005413 1.7e-115 420.2 392 57.7
Sc06g0008140 Simmondsia chinensis HOM05D004534 ORTHO05D005413 1.6e-113 413.7 384 56.8
Lj1A180G32 Lonicera japonica HOM05D004534 ORTHO05D005413 3.5e-113 412.5 310 66.8
Sabra08G0032000 Salix brachista HOM05D004534 ORTHO05D005413 3.5e-113 412.5 338 61.5
Nitab4.5_0000561g0030 Nicotiana tabacum HOM05D004534 ORTHO05D005413 4.5e-113 412.1 355 61.1
Duzib106G1068 Durio zibethinus HOM05D004534 ORTHO05D005413 1.0e-112 411.0 356 59.3
Manes.10G040600 Manihot esculenta HOM05D004534 ORTHO05D005413 2.9e-112 409.5 347 61.1
MELO3C025495.2 Cucumis melo HOM05D004534 ORTHO05D005413 5.0e-112 408.7 384 58.1
QL08p057247 Quercus lobata HOM05D004534 ORTHO05D005413 5.0e-112 408.7 543 44.2
AUR62036245 Chenopodium quinoa HOM05D004534 ORTHO05D005413 6.5e-112 408.3 363 59.2
Ah.10g033090 Amaranthus hybridus HOM05D004534 ORTHO05D005413 9.5e-111 404.4 340 59.7
Oeu055059.2 Olea europaea HOM05D004534 ORTHO05D005413 4.7e-110 402.1 308 63.6
Sabra10G0167000 Salix brachista HOM05D004534 ORTHO05D005413 4.0e-109 399.1 372 57.5
Sopen06g031920 Solanum pennellii HOM05D004534 ORTHO05D005413 5.2e-109 398.7 208 92.3
Gorai.004G002200 Gossypium raimondii HOM05D004534 ORTHO05D005413 1.2e-108 397.5 337 63.2
FAN06G3998 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.3e-107 394.0 494 46.6
FAN16G0790 Fragaria x ananassa HOM05D004534 ORTHO05D005413 7.3e-103 378.3 411 53.0
Lj1A926G31 Lonicera japonica HOM05D004534 ORTHO05D005413 6.8e-101 371.7 356 57.3
Nitab4.5_0000830g0040 Nicotiana tabacum HOM05D004534 ORTHO05D005413 2.9e-99 366.3 344 57.6
Gohir.A05G298800 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.7e-96 357.1 275 63.6
SGA_v2.0_scaffold61G21215 Striga asiatica HOM05D004534 ORTHO05D005413 2.5e-95 353.2 239 71.1
TAR633G1279 Trochodendron aralioides HOM05D004534 ORTHO05D005413 1.2e-94 350.9 271 66.4
Prupe.6G090300 Prunus persica HOM05D004534 ORTHO05D005413 2.3e-93 346.7 265 68.7
CiPaw.13G104100 Carya illinoinensis HOM05D004534 ORTHO05D005413 5.2e-93 345.5 265 67.2
Mapoly0029s0123 Marchantia polymorpha HOM05D004534 ORTHO05D005413 9.8e-92 341.3 357 50.1
AUR62036013 Chenopodium quinoa HOM05D004534 ORTHO05D005413 1.7e-91 340.5 401 48.4
Pp3c16_8740 Physcomitrium patens HOM05D004534 ORTHO05D005413 2.4e-90 336.7 389 47.3
FvH4_7g20500 Fragaria vesca HOM05D004534 ORTHO05D005413 3.5e-89 332.8 242 67.4
Sed0004393 Sechium edule HOM05D004534 ORTHO05D005413 3.0e-88 329.7 347 53.3
COL.COLO4_18394 Corchorus olitorius HOM05D004534 ORTHO05D005413 5.2e-85 318.9 298 56.7
SMO118G0317 Selaginella moellendorffii HOM05D004534 ORTHO05D005413 1.9e-82 310.5 350 47.4
Carub.0005s1159 Capsella rubella HOM05D004534 ORTHO05D005413 2.1e-81 307.0 237 64.6
ClCG09G020370 Citrullus lanatus HOM05D004534 ORTHO05D005413 3.5e-73 279.6 347 47.8
Ciclev10032311m.g Citrus clementina HOM05D004534 ORTHO05D005413 4.6e-73 279.3 286 55.2
MBI18_g24932_MAGBIO Magnolia biondii HOM05D004534 ORTHO05D005413 1.2e-68 264.6 524 36.1
Cc09_g02390 Coffea canephora HOM05D004534 ORTHO05D005413 7.6e-68 261.9 197 66.5
FAN10G0821 Fragaria x ananassa HOM05D004534 ORTHO05D005413 8.1e-62 241.9 350 42.6
Cpa.g.sc1.278 Carica papaya HOM05D004534 ORTHO05D005413 1.8e-53 214.2 263 46.0
CBR_g24062 Chara braunii HOM05D004534 ORTHO05D005413 4.0e-53 213.0 302 40.4
AagrBONN_evm.TU.Sc2ySwM_228.5090 Anthoceros agrestis HOM05D004534 ORTHO05D005413 1.9e-50 204.1 189 52.9
Cfa024137 Carpinus fangiana HOM05D004534 ORTHO05D005413 2.5e-39 167.2 408 31.4
Cc09_g02400 Coffea canephora HOM05D004534 ORTHO05D005413 3.7e-38 163.3 136 62.5
Nitab4.5_0000830g0060 Nicotiana tabacum HOM05D004534 ORTHO05D005413 8.2e-38 162.2 173 52.0
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 5.9e-36 156.0 302 34.1
Cre01.g013250 Chlamydomonas reinhardtii HOM05D004534 ORTHO05D005413 6.1e-33 146.0 332 30.7
AUR62035991 Chenopodium quinoa HOM05D004534 ORTHO05D005413 6.9e-29 132.5 116 56.0
VMungo0464G2039 Vigna mungo HOM05D004534 ORTHO05D005413 6.7e-24 115.9 219 39.3
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 8.8e-24 115.5 63 88.9
Glyma.15G044000 Glycine max HOM05D004534 ORTHO05D005413 2.0e-20 104.4 81 64.2
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 2.1e-17 94.4 56 71.4
RcHm_v2.0_Chr5g0046071 Rosa chinensis HOM05D004534 ORTHO05D005413 3.9e-16 90.1 48 89.6
CAN.G1235.22 Capsicum annuum HOM05D000680 ORTHO05D000738 4.4e-15 86.7 57 75.4
Nitab4.5_0000830g0070 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.9e-10 71.2 43 76.7
Actinidia38238 Actinidia chinensis HOM05D004534 ORTHO05D005413 2.5e-10 70.9 135 36.3
AagrBONN_evm.TU.Sc2ySwM_117.2640 Anthoceros agrestis HOM05D012537 ORTHO05D009535 8.8e-08 62.4 39 66.7


User provided reference genes

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