Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 8.7e-218 760.0 377 100.0
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 2.4e-191 672.2 379 87.9
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 1.5e-190 669.5 379 87.3
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 7.7e-190 667.2 379 87.1
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 1.3e-184 649.8 379 86.3
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 1.2e-182 643.3 379 85.2
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 4.5e-174 614.8 378 81.5
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 1.2e-145 520.4 378 69.3
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 4.7e-139 498.4 369 69.1
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 5.2e-138 495.0 383 66.1
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 2.6e-137 492.7 383 66.1
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 1.5e-129 466.8 368 64.7
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 5.8e-129 464.9 387 62.0
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 2.4e-127 459.5 362 63.8
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 4.6e-126 455.3 352 65.1
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 1.7e-125 453.4 383 60.1
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 1.1e-124 450.7 333 67.9
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 1.5e-124 450.3 440 55.2
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 4.3e-124 448.7 328 69.2
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 9.6e-124 447.6 376 60.6
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 1.2e-123 447.2 367 63.8
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 8.1e-123 444.5 378 60.3
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 8.1e-123 444.5 371 63.6
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 8.1e-123 444.5 374 62.0
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 1.1e-122 444.1 368 63.9
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 5.2e-122 441.8 381 59.3
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 6.8e-122 441.4 378 59.8
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 2.6e-121 439.5 381 59.1
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 4.4e-121 438.7 368 62.8
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 7.6e-121 438.0 371 63.6
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 1.7e-120 436.8 343 64.7
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 2.2e-120 436.4 373 61.4
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 6.4e-120 434.9 362 61.6
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 1.1e-119 434.1 366 61.7
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 1.1e-119 434.1 376 59.3
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 1.9e-119 433.3 366 61.2
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 5.4e-119 431.8 374 60.4
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 1.2e-118 430.6 365 59.2
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 1.2e-118 430.6 377 59.2
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 1.2e-118 430.6 364 61.3
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.2e-118 430.6 328 65.5
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 3.5e-118 429.1 407 55.5
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 2.3e-117 426.4 372 60.5
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 2.3e-117 426.4 360 61.7
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 5.1e-117 425.2 373 59.2
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 5.1e-117 425.2 371 60.9
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 6.6e-117 424.9 345 64.1
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 8.7e-117 424.5 379 58.6
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 2.5e-116 422.9 381 58.0
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 3.3e-116 422.5 344 61.0
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 4.3e-116 422.2 333 64.3
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 5.6e-116 421.8 382 56.5
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 5.6e-116 421.8 374 59.1
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 7.3e-116 421.4 373 61.4
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 1.6e-115 420.2 329 62.9
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 2.8e-115 419.5 349 61.0
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 2.4e-114 416.4 381 59.6
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 1.5e-113 413.7 350 62.3
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 3.4e-113 412.5 383 56.4
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 7.6e-113 411.4 367 58.6
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 1.3e-112 410.6 339 59.3
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 1.7e-112 410.2 381 58.5
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 2.2e-112 409.8 282 69.9
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 1.1e-111 407.5 375 56.8
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 1.2e-110 404.1 327 63.9
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 3.0e-109 399.4 350 58.0
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 6.6e-109 398.3 361 58.2
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 1.1e-108 397.5 383 57.2
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 2.5e-108 396.4 364 58.2
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 9.6e-108 394.4 315 63.2
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 9.6e-108 394.4 328 61.6
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 1.6e-107 393.7 321 62.3
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 2.1e-107 393.3 369 57.2
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 1.1e-106 391.0 320 62.5
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 1.4e-106 390.6 315 63.2
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 1.8e-106 390.2 319 63.3
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 2.4e-106 389.8 342 61.1
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 6.9e-106 388.3 371 55.0
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 9.0e-106 387.9 330 60.9
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 9.0e-106 387.9 342 60.5
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 1.2e-105 387.5 338 60.4
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 1.2e-105 387.5 364 56.3
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 2.0e-105 386.7 319 63.0
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 3.4e-105 386.0 368 55.2
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 5.8e-105 385.2 371 55.0
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 7.6e-105 384.8 318 61.9
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 9.9e-105 384.4 319 61.8
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.3e-104 384.0 280 68.2
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 2.2e-104 383.3 321 61.4
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 2.2e-104 383.3 366 55.2
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 3.8e-104 382.5 385 55.1
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 8.4e-104 381.3 280 67.9
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 1.9e-103 380.2 370 55.7
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 2.4e-103 379.8 322 60.9
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 1.2e-102 377.5 367 55.3
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 2.1e-102 376.7 318 60.4
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 3.5e-102 375.9 319 61.8
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 7.9e-102 374.8 368 54.1
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 4.3e-100 369.0 271 69.4
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 7.4e-100 368.2 363 54.5
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 1.8e-98 363.6 368 55.7
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 5.3e-98 362.1 297 59.6
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 5.3e-98 362.1 277 66.4
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 9.0e-98 361.3 289 64.0
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 1.4e-95 354.0 343 54.5
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 1.3e-93 347.4 316 60.1
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 3.9e-93 345.9 283 59.0
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 2.5e-92 343.2 317 57.7
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 3.3e-92 342.8 275 62.2
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 5.3e-90 335.5 318 55.0
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 2.3e-85 320.1 285 55.8
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 2.2e-83 313.5 260 64.6
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 1.2e-78 297.7 304 52.3
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 1.7e-75 287.3 289 52.2
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 2.8e-67 260.0 286 48.6
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 2.4e-66 256.9 240 56.7
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 2.4e-66 256.9 267 48.7
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 4.5e-65 252.7 277 45.8
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 7.7e-65 251.9 277 46.6
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 7.2e-63 245.4 276 45.3
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 6.1e-62 242.3 187 64.7
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 3.3e-60 236.5 276 45.7
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 5.0e-56 222.6 289 42.2
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 2.5e-47 193.7 174 56.9
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 2.6e-44 183.7 180 55.6
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 5.4e-34 149.4 144 54.2
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 2.3e-32 144.1 131 56.5
HanXRQChr16g0507541 Helianthus annuus HOM05D005476 ORTHO05D006886 3.1e-29 133.7 101 66.3
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 6.6e-24 115.9 170 42.4
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 6.2e-22 109.4 110 55.5
Actinidia23243 Actinidia chinensis HOM05D005476 ORTHO05D006886 2.2e-19 100.9 62 79.0
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 2.2e-19 100.9 113 53.1
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 2.2e-19 100.9 113 53.1
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 1.6e-17 94.7 84 58.3
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 2.6e-12 77.4 80 53.8
SalBow5G5594 Salvia bowleyana HOM05D005476 ORTHO05D006886 3.4e-12 77.0 71 56.3
Pp3c11_9540 Physcomitrium patens HOM05D005476 ORTHO05D006886 1.7e-11 74.7 95 40.0
RcHm_v2.0_Chr6g0303391 Rosa chinensis HOM05D005476 ORTHO05D006886 5.4e-10 69.7 49 67.3
Manes.06G141400 Manihot esculenta HOM05D000559 ORTHO05D000596 4.3e-07 60.1 273 24.2
Pp3c21_3850 Physcomitrium patens HOM05D004293 ORTHO05D005044 1.6e-06 58.2 183 27.9
Actinidia13541 Actinidia chinensis HOM05D000559 ORTHO05D000596 2.8e-06 57.4 318 24.2
ECA232G1213 Erigeron canadensis HOM05D000559 ORTHO05D000596 3.6e-06 57.0 245 23.3


User provided reference genes

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