Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G3901.1 Capsicum annuum HOM05D002092 ORTHO05D024780 9.4e-65 250.0 121 100.0
CAN.G484.113 Capsicum annuum HOM05D002092 ORTHO05D024780 1.0e-50 203.4 98 100.0
CAN.G484.114 Capsicum annuum HOM05D002092 ORTHO05D007041 3.1e-44 181.8 137 70.8
Haze_00759 Corylus avellana HOM05D002092 ORTHO05D007041 1.0e-42 176.8 96 85.4
Solyc12g098830.2 Solanum lycopersicum HOM05D002092 ORTHO05D007041 1.0e-42 176.8 137 68.6
Sopen12g033570 Solanum pennellii HOM05D002092 ORTHO05D007041 1.7e-42 176.0 137 68.6
Cfa015737 Carpinus fangiana HOM05D002092 ORTHO05D007041 2.2e-42 175.6 96 85.4
Nitab4.5_0000978g0080 Nicotiana tabacum HOM05D002092 ORTHO05D007041 3.8e-42 174.9 137 67.2
Nitab4.5_0002466g0050 Nicotiana tabacum HOM05D002092 ORTHO05D007041 1.1e-41 173.3 137 66.4
Peaxi162Scf00323g00822 Petunia axillaris HOM05D002092 ORTHO05D007041 1.1e-41 173.3 136 66.9
DCAR_023413 Daucus carota HOM05D002092 ORTHO05D007041 1.6e-40 169.5 95 80.0
Dinv01476 Davidia involucrata HOM05D002092 ORTHO05D007041 5.7e-38 161.0 134 60.4
Oeu002202.1 Olea europaea HOM05D002092 ORTHO05D007041 9.8e-38 160.2 134 62.7
PGR004G1753 Punica granatum HOM05D002092 ORTHO05D007041 6.3e-37 157.5 141 58.9
CANSAT78G1398 Cannabis sativa HOM05D002092 ORTHO05D007041 1.1e-36 156.8 134 61.2
Cc03_g00070 Coffea canephora HOM05D002092 ORTHO05D007041 1.1e-36 156.8 135 60.7
Phvul.003G122300 Phaseolus vulgaris HOM05D002092 ORTHO05D007041 1.1e-36 156.8 136 60.3
Sed0019064 Sechium edule HOM05D002092 ORTHO05D007041 1.1e-36 156.8 141 58.2
ClCG06G004150 Citrullus lanatus HOM05D002092 ORTHO05D007041 1.8e-36 156.0 135 59.3
Lalb_Chr12g0200551 Lupinus albus HOM05D002092 ORTHO05D007041 1.8e-36 156.0 135 60.7
EL10Ac3g06236 Beta vulgaris HOM05D002092 ORTHO05D007041 2.4e-36 155.6 135 60.0
MELO3C021226.2 Cucumis melo HOM05D002092 ORTHO05D007041 2.4e-36 155.6 135 59.3
CsaV3_6G000280 Cucumis sativus L. HOM05D002092 ORTHO05D007041 2.4e-36 155.6 135 59.3
Glyma.13G119100 Glycine max HOM05D002092 ORTHO05D007041 2.4e-36 155.6 135 60.0
SGA_v2.0_scaffold157G37393 Striga asiatica HOM05D002092 ORTHO05D007041 2.4e-36 155.6 137 57.7
arahy.Tifrunner.gnm1.ann1.06DG1T Arachis hypogaea HOM05D002092 ORTHO05D007041 3.1e-36 155.2 135 60.7
arahy.Tifrunner.gnm1.ann1.GJZ8MD Arachis hypogaea HOM05D002092 ORTHO05D007041 3.1e-36 155.2 135 60.7
Ca_21373_v3 Cicer arietinum L. HOM05D002092 ORTHO05D007041 3.1e-36 155.2 135 59.3
FvH4_4g21590 Fragaria vesca HOM05D002092 ORTHO05D007041 3.1e-36 155.2 135 60.0
FAN07G0083 Fragaria x ananassa HOM05D002092 ORTHO05D007041 3.1e-36 155.2 135 60.0
FAN12G0996 Fragaria x ananassa HOM05D002092 ORTHO05D007041 3.1e-36 155.2 135 60.0
FAN17G1215 Fragaria x ananassa HOM05D002092 ORTHO05D007041 3.1e-36 155.2 135 60.0
Glyma.17G041100 Glycine max HOM05D002092 ORTHO05D007041 3.1e-36 155.2 135 60.0
Medtr4g123980 Medicago truncatula HOM05D002092 ORTHO05D007041 4.1e-36 154.8 135 58.5
AUR62002541 Chenopodium quinoa HOM05D002092 ORTHO05D007041 7.0e-36 154.1 135 59.3
QL06p014383 Quercus lobata HOM05D002092 ORTHO05D007041 7.0e-36 154.1 134 58.2
CSS0002469 Camellia sinensis var. sinensis HOM05D002092 ORTHO05D007041 1.2e-35 153.3 134 59.7
CiPaw.01G128500 Carya illinoinensis HOM05D002092 ORTHO05D007041 1.2e-35 153.3 135 58.5
COL.COLO4_34508 Corchorus olitorius HOM05D002092 ORTHO05D007041 1.2e-35 153.3 134 58.2
Hma1.2p1_2234F.1_g317640 Hydrangea macrophylla HOM05D002092 ORTHO05D007041 1.2e-35 153.3 134 59.0
VMungo1215G0636 Vigna mungo HOM05D002092 ORTHO05D007041 1.2e-35 153.3 135 59.3
Eucgr.H04128 Eucalyptus grandis HOM05D002092 ORTHO05D007041 1.6e-35 152.9 132 59.1
Prupe.1G104500 Prunus persica HOM05D002092 ORTHO05D007041 1.6e-35 152.9 134 59.0
RcHm_v2.0_Chr4g0427701 Rosa chinensis HOM05D002092 ORTHO05D007041 1.6e-35 152.9 135 60.0
TPR.G12594 Trifolium pratense HOM05D002092 ORTHO05D007041 1.6e-35 152.9 135 57.8
Cpa.g.sc146.15 Carica papaya HOM05D002092 ORTHO05D007041 2.0e-35 152.5 133 58.6
Psat4g021200 Pisum sativum HOM05D002092 ORTHO05D007041 2.0e-35 152.5 135 57.8
GSVIVG01017695001 Vitis vinifera HOM05D002092 ORTHO05D007041 2.0e-35 152.5 135 58.5
AUR62023651 Chenopodium quinoa HOM05D002092 ORTHO05D007041 2.7e-35 152.1 134 59.0
Thecc.04G313900 Theobroma cacao HOM05D002092 ORTHO05D007041 2.7e-35 152.1 134 57.5
Hma1.2p1_1449F.1_g284065 Hydrangea macrophylla HOM05D002092 ORTHO05D007041 3.5e-35 151.8 134 59.0
Lalb_Chr07g0181631 Lupinus albus HOM05D002092 ORTHO05D007041 4.5e-35 151.4 135 58.5
vmacro08015 Vaccinium macrocarpon HOM05D002092 ORTHO05D007041 4.5e-35 151.4 136 58.1
Ciclev10004546m.g Citrus clementina HOM05D002092 ORTHO05D007041 7.8e-35 150.6 135 58.5
Potri.008G205900 Populus trichocarpa HOM05D002092 ORTHO05D007041 1.0e-34 150.2 134 58.2
CiPaw.02G068900 Carya illinoinensis HOM05D002092 ORTHO05D007041 1.3e-34 149.8 134 57.5
Gohir.A02G059000 Gossypium hirsutum HOM05D002092 ORTHO05D007041 1.7e-34 149.4 134 56.7
Gohir.D02G064700 Gossypium hirsutum HOM05D002092 ORTHO05D007041 1.7e-34 149.4 134 56.7
Gorai.005G073300 Gossypium raimondii HOM05D002092 ORTHO05D007041 1.7e-34 149.4 134 56.7
Duzib212G0591 Durio zibethinus HOM05D002092 ORTHO05D007041 2.3e-34 149.1 134 56.0
Prupe.1G104000 Prunus persica HOM05D002092 ORTHO05D007041 2.3e-34 149.1 134 57.5
THA.LOC104818932 Tarenaya hassleriana HOM05D002092 ORTHO05D007041 2.3e-34 149.1 134 58.2
Atru.chr4.3168 Acer truncatum HOM05D002092 ORTHO05D007041 2.9e-34 148.7 134 58.2
MSTRG.10185 Avicennia marina HOM05D002092 ORTHO05D007041 2.9e-34 148.7 134 55.2
Migut.G00901 Erythranthe guttata HOM05D002092 ORTHO05D007041 2.9e-34 148.7 131 57.3
Rhsim04G0249000 Rhododendron simsii HOM05D002092 ORTHO05D007041 2.9e-34 148.7 135 57.8
Lsat_1_v5_gn_6_118301 Lactuca sativa HOM05D002092 ORTHO05D007041 3.8e-34 148.3 135 57.0
Manes.03G212300 Manihot esculenta HOM05D002092 ORTHO05D007041 3.8e-34 148.3 134 56.7
Potri.010G002900 Populus trichocarpa HOM05D002092 ORTHO05D007041 3.8e-34 148.3 134 58.2
Sabra08G0149600 Salix brachista HOM05D002092 ORTHO05D007041 6.6e-34 147.5 134 57.5
THA.LOC104827346 Tarenaya hassleriana HOM05D002092 ORTHO05D007041 6.6e-34 147.5 140 57.1
Aa31sc279G30 Aethionema arabicum HOM05D002092 ORTHO05D007041 8.6e-34 147.1 134 56.0
MD13G1140600 Malus domestica HOM05D002092 ORTHO05D007041 8.6e-34 147.1 134 57.5
Lj6A702G44 Lonicera japonica HOM05D002092 ORTHO05D007041 1.1e-33 146.7 146 55.5
Thhalv10003802m.g Eutrema salsugineum HOM05D002092 ORTHO05D007041 1.5e-33 146.4 134 56.0
Lj4g0022953 Lotus japonicus HOM05D002092 ORTHO05D007041 1.5e-33 146.4 130 59.2
A02p37830 Brassica napus HOM05D002092 ORTHO05D007041 1.9e-33 146.0 134 55.2
BolC2t11769H Brassica oleracea HOM05D002092 ORTHO05D007041 1.9e-33 146.0 134 55.2
BraA02t08765Z Brassica rapa HOM05D002092 ORTHO05D007041 1.9e-33 146.0 134 55.2
Dinv29499 Davidia involucrata HOM05D002092 ORTHO05D000562 1.9e-33 146.0 144 56.2
HanXRQChr05g0148981 Helianthus annuus HOM05D002092 ORTHO05D007041 1.9e-33 146.0 135 57.0
Hund22644 Selenicereus undatus HOM05D002092 ORTHO05D007041 2.5e-33 145.6 131 58.0
BcaC03g17690 Brassica carinata HOM05D002092 ORTHO05D007041 3.3e-33 145.2 134 55.2
C02p56990 Brassica napus HOM05D002092 ORTHO05D007041 3.3e-33 145.2 134 55.2
Actinidia01069 Actinidia chinensis HOM05D002092 ORTHO05D007041 4.3e-33 144.8 134 56.7
Actinidia18512 Actinidia chinensis HOM05D002092 ORTHO05D007041 4.3e-33 144.8 134 56.7
Sp2g19340 Schrenkiella parvula HOM05D002092 ORTHO05D007041 4.3e-33 144.8 134 54.5
MD16G1135200 Malus domestica HOM05D002092 ORTHO05D007041 5.6e-33 144.4 141 54.6
PSO761G0176 Papaver somniferum HOM05D002092 ORTHO05D007041 5.6e-33 144.4 136 53.7
TAR636G2233 Trochodendron aralioides HOM05D001914 ORTHO05D007041 5.6e-33 144.4 135 55.6
AT5G48960 Arabidopsis thaliana HOM05D002092 ORTHO05D007041 7.3e-33 144.1 134 54.5
Carub.0008s0871 Capsella rubella HOM05D002092 ORTHO05D007041 7.3e-33 144.1 134 54.5
BcaB07g34209 Brassica carinata HOM05D002092 ORTHO05D007041 9.5e-33 143.7 134 54.5
A06p38670 Brassica napus HOM05D002092 ORTHO05D007041 9.5e-33 143.7 134 54.5
CARHR284570 Cardamine hirsuta HOM05D002092 ORTHO05D007041 9.5e-33 143.7 134 54.5
ECA246G4720 Erigeron canadensis HOM05D002092 ORTHO05D007041 1.2e-32 143.3 135 56.3
Nn4g25366 Nelumbo nucifera HOM05D002092 ORTHO05D007041 1.2e-32 143.3 134 54.5
Aqoxy2G02499 Aquilegia oxysepala HOM05D002092 ORTHO05D007041 1.6e-32 142.9 134 53.0
Glyma.15G187000 Glycine max HOM05D002092 ORTHO05D007041 1.6e-32 142.9 134 57.5
Sabra10G0002300 Salix brachista HOM05D002092 ORTHO05D007041 1.6e-32 142.9 134 56.0
AL8G22200 Arabidopsis lyrata HOM05D002092 ORTHO05D007041 2.1e-32 142.5 134 53.7
BraA06t26781Z Brassica rapa HOM05D002092 ORTHO05D007041 4.7e-32 141.4 134 53.7
PSO210G1155 Papaver somniferum HOM05D002092 ORTHO05D007041 4.7e-32 141.4 136 52.9
ATR0796G082 Amborella trichopoda HOM05D002092 ORTHO05D007041 6.1e-32 141.0 133 54.9
BolC7t44483H Brassica oleracea HOM05D002092 ORTHO05D007041 6.1e-32 141.0 134 53.0
BcaC06g30737 Brassica carinata HOM05D002092 ORTHO05D007041 1.0e-31 140.2 137 52.6
MBI18_g10381_MAGBIO Magnolia biondii HOM05D002092 ORTHO05D007041 1.0e-31 140.2 134 55.2
C07p39590 Brassica napus HOM05D002092 ORTHO05D007041 1.4e-31 139.8 134 52.2
SalBow8G4005 Salvia bowleyana HOM05D002092 ORTHO05D007041 1.4e-31 139.8 79 81.0
VMungo1309G2400 Vigna mungo HOM05D002092 ORTHO05D007041 3.0e-31 138.7 134 53.0
Phvul.009G220400 Phaseolus vulgaris HOM05D002092 ORTHO05D007041 5.2e-31 137.9 81 77.8
Sc13g0008020 Simmondsia chinensis HOM05D002092 ORTHO05D007041 6.8e-31 137.5 75 82.7
TAR633G1005 Trochodendron aralioides HOM05D002092 ORTHO05D007041 6.8e-31 137.5 134 54.5
HPP92_001181 Vanilla planifolia HOM05D002092 ORTHO05D007041 8.9e-31 137.1 139 52.5
CDE02G3170 Ceratophyllum demersum HOM05D002092 ORTHO05D007041 2.9e-29 132.1 134 53.7
AagrBONN_evm.TU.Sc2ySwM_117.1377 Anthoceros agrestis HOM05D002092 ORTHO05D007041 3.7e-29 131.7 132 50.8
Os01g0250900 Oryza sativa ssp. japonica HOM05D002092 ORTHO05D007041 6.4e-29 131.0 134 52.2
Rhsim04G0249600 Rhododendron simsii HOM05D002092 ORTHO05D007041 8.3e-29 130.6 68 85.3
Pp3c8_7530 Physcomitrium patens HOM05D002092 ORTHO05D007041 1.1e-28 130.2 135 51.1
Mapoly0044s0089 Marchantia polymorpha HOM05D002092 ORTHO05D007041 4.1e-28 128.3 140 47.1
SMO118G0340 Selaginella moellendorffii HOM05D002092 ORTHO05D007041 7.0e-28 127.5 132 49.2
Pp3c3_29260 Physcomitrium patens HOM05D002092 ORTHO05D007041 9.2e-28 127.1 135 49.6
SEGI_14302 Sequoiadendron giganteum HOM05D002092 ORTHO05D007041 1.3e-26 123.2 76 73.7
CBR_g36889 Chara braunii HOM05D002092 ORTHO05D007041 5.6e-25 117.9 83 63.9
Cre13.g573150 Chlamydomonas reinhardtii HOM05D002092 ORTHO05D007041 2.8e-24 115.5 76 67.1
Lsat_1_v5_gn_3_136841 Lactuca sativa HOM05D002092 ORTHO05D024780 4.3e-17 91.7 47 83.0
Migut.C00318 Erythranthe guttata HOM05D002092 ORTHO05D007041 9.5e-17 90.5 92 57.6
Glyma.09G079500 Glycine max HOM05D002092 ORTHO05D024780 3.5e-11 72.0 39 76.9
ECA247G0066 Erigeron canadensis HOM05D002092 ORTHO05D005410 8.1e-08 60.8 78 42.3
Lsat_1_v5_gn_1_18740 Lactuca sativa HOM05D002092 ORTHO05D005410 8.1e-08 60.8 69 43.5
HanXRQChr02g0039761 Helianthus annuus HOM05D002092 ORTHO05D005410 1.8e-07 59.7 69 43.5
HanXRQChr04g0105681 Helianthus annuus HOM05D002092 ORTHO05D005410 3.1e-07 58.9 69 44.9
HanXRQChr04g0105691 Helianthus annuus HOM05D002092 ORTHO05D005410 3.1e-07 58.9 69 44.9
CiPaw.16G058900 Carya illinoinensis HOM05D002092 ORTHO05D005410 8.9e-07 57.4 69 43.5
SalBow7G2615 Salvia bowleyana HOM05D002092 ORTHO05D005410 1.2e-06 57.0 69 40.6
Gohir.A06G010100 Gossypium hirsutum HOM05D002092 ORTHO05D005410 2.0e-06 56.2 69 40.6
Gohir.D06G007500 Gossypium hirsutum HOM05D002092 ORTHO05D005410 2.0e-06 56.2 69 40.6
Gorai.010G010200 Gossypium raimondii HOM05D002092 ORTHO05D005410 2.0e-06 56.2 69 40.6
HanXRQChr05g0153601 Helianthus annuus HOM05D002092 ORTHO05D005410 2.0e-06 56.2 69 42.0
Lsat_1_v5_gn_5_27540 Lactuca sativa HOM05D002092 ORTHO05D005410 2.0e-06 56.2 69 42.0
PSO210G7256 Papaver somniferum HOM05D002092 ORTHO05D005410 2.0e-06 56.2 69 40.6
PSO731G0029 Papaver somniferum HOM05D002092 ORTHO05D005410 2.0e-06 56.2 69 40.6
ECA246G1239 Erigeron canadensis HOM05D002092 ORTHO05D005410 2.6e-06 55.8 69 42.0
Eucgr.F01892 Eucalyptus grandis HOM05D002092 ORTHO05D005410 2.6e-06 55.8 69 40.6
Lj4C786T3 Lonicera japonica HOM05D002092 ORTHO05D005410 3.4e-06 55.5 65 44.6
Potri.014G196700 Populus trichocarpa HOM05D002092 ORTHO05D005410 3.4e-06 55.5 69 40.6
Sabra14G0145500 Salix brachista HOM05D002092 ORTHO05D005410 3.4e-06 55.5 69 40.6
PGR083G1162 Punica granatum HOM05D002092 ORTHO05D005410 4.4e-06 55.1 69 40.6
CDE01G0519 Ceratophyllum demersum HOM05D002092 ORTHO05D005410 5.8e-06 54.7 75 37.3
Ca_05955_v3 Cicer arietinum L. HOM05D002092 ORTHO05D005410 5.8e-06 54.7 72 37.5
Os03g0774300 Oryza sativa ssp. japonica HOM05D002092 ORTHO05D005410 5.8e-06 54.7 69 40.6
PRCOL_00001743 Prasinoderma coloniale HOM05D002092 ORTHO05D005410 5.8e-06 54.7 69 40.6
Ciclev10000800m.g Citrus clementina HOM05D002092 ORTHO05D005410 7.6e-06 54.3 69 40.6
ATR0733G055 Amborella trichopoda HOM05D002092 ORTHO05D005410 9.9e-06 53.9 69 40.6
AUR62038819 Chenopodium quinoa HOM05D002092 ORTHO05D005410 9.9e-06 53.9 69 39.1
AUR62043706 Chenopodium quinoa HOM05D002092 ORTHO05D005410 9.9e-06 53.9 69 39.1
Lj1g0019872 Lotus japonicus HOM05D002092 ORTHO05D005410 9.9e-06 53.9 69 37.7
QL02p008697 Quercus lobata HOM05D002092 ORTHO05D005410 9.9e-06 53.9 69 40.6
SGA_v2.0_scaffold54G19516 Striga asiatica HOM05D002092 ORTHO05D005410 9.9e-06 53.9 69 40.6


User provided reference genes

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