Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 1.3e-131 473.0 233 100.0
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 6.8e-120 434.1 232 90.9
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 8.8e-120 433.7 232 90.9
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 2.4e-109 399.1 234 83.3
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 3.1e-109 398.7 219 87.2
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.4e-104 383.3 232 81.9
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.3e-86 323.6 233 67.4
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.7e-86 323.2 233 67.4
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 1.3e-83 313.5 162 92.0
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 9.5e-82 307.4 232 63.4
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 4.0e-80 302.0 233 63.1
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 1.3e-78 297.0 233 65.7
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 3.8e-78 295.4 232 61.2
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 6.4e-78 294.7 233 64.4
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 1.9e-77 293.1 233 61.4
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 3.2e-77 292.4 232 60.8
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 5.4e-77 291.6 237 62.4
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 1.2e-76 290.4 235 61.3
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 2.1e-76 289.7 232 62.1
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 2.1e-76 289.7 220 66.4
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 2.1e-76 289.7 233 61.4
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 2.1e-76 289.7 233 61.4
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 1.0e-75 287.3 222 67.1
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 1.3e-75 287.0 235 61.3
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 1.7e-75 286.6 233 62.7
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 3.9e-75 285.4 233 62.7
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 6.6e-75 284.6 232 62.5
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 1.5e-74 283.5 231 61.5
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 4.3e-74 282.0 233 61.4
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 5.6e-74 281.6 231 59.7
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 9.6e-74 280.8 234 60.3
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 1.2e-73 280.4 233 60.9
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 3.6e-73 278.9 234 62.0
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 4.7e-73 278.5 233 60.9
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 6.2e-73 278.1 234 61.5
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 6.2e-73 278.1 236 59.7
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 1.8e-72 276.6 235 60.4
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 4.0e-72 275.4 235 60.0
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 5.2e-72 275.0 237 59.1
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 1.2e-71 273.9 233 60.1
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 1.2e-71 273.9 233 62.7
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 1.2e-71 273.9 233 59.7
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 1.5e-71 273.5 232 58.2
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 3.4e-71 272.3 232 59.5
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 4.4e-71 271.9 244 57.8
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 4.4e-71 271.9 234 59.4
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 7.6e-71 271.2 260 56.5
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 9.9e-71 270.8 238 56.3
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 1.3e-70 270.4 236 58.5
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.2e-70 269.6 239 59.0
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.2e-70 269.6 170 75.3
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 2.2e-70 269.6 234 59.0
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 4.9e-70 268.5 233 59.7
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 8.4e-70 267.7 233 58.8
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 1.4e-69 266.9 234 58.1
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.4e-69 266.9 234 58.1
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 1.4e-69 266.9 232 59.1
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 1.9e-69 266.5 233 59.7
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 1.9e-69 266.5 233 57.9
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 1.9e-69 266.5 233 57.9
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 3.2e-69 265.8 260 56.2
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 4.2e-69 265.4 237 58.6
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 9.3e-69 264.2 234 57.3
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 1.2e-68 263.8 233 56.7
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 1.6e-68 263.5 233 59.2
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 1.6e-68 263.5 233 59.2
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 1.6e-68 263.5 233 58.8
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 2.7e-68 262.7 247 57.5
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 3.5e-68 262.3 219 60.3
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 4.6e-68 261.9 233 57.9
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 6.0e-68 261.5 170 74.1
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 6.0e-68 261.5 170 74.1
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 1.0e-67 260.8 170 72.4
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 1.0e-67 260.8 233 56.2
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 1.3e-67 260.4 264 53.8
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 1.3e-67 260.4 170 74.1
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 3.0e-67 259.2 231 56.3
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 3.9e-67 258.8 233 57.5
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 3.9e-67 258.8 243 55.1
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 5.1e-67 258.5 175 69.7
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 6.6e-67 258.1 234 56.0
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 6.6e-67 258.1 244 55.3
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 8.7e-67 257.7 240 55.8
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 8.7e-67 257.7 240 55.8
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 1.1e-66 257.3 233 60.1
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 1.1e-66 257.3 238 56.7
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 1.5e-66 256.9 226 59.3
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 1.5e-66 256.9 320 46.9
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 1.5e-66 256.9 235 56.2
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 1.9e-66 256.5 233 57.1
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 4.3e-66 255.4 233 54.9
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 5.6e-66 255.0 175 69.1
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 7.3e-66 254.6 233 56.2
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 7.3e-66 254.6 246 54.1
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 7.3e-66 254.6 258 53.9
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 7.3e-66 254.6 229 55.9
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 1.3e-65 253.8 179 67.0
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 2.1e-65 253.1 235 57.0
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 4.8e-65 251.9 231 56.3
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 6.2e-65 251.5 241 54.8
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 8.1e-65 251.1 236 53.4
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 8.1e-65 251.1 266 51.9
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 8.1e-65 251.1 254 52.8
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.1e-64 250.8 239 56.1
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.4e-64 250.4 232 55.6
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 1.4e-64 250.4 225 57.8
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 2.4e-64 249.6 237 54.4
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 5.3e-64 248.4 230 57.0
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 6.9e-64 248.1 259 52.5
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 6.9e-64 248.1 244 54.9
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 9.0e-64 247.7 175 68.0
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 1.2e-63 247.3 175 70.9
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 2.0e-63 246.5 233 55.4
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 7.6e-63 244.6 230 54.8
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 7.6e-63 244.6 234 53.8
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 9.9e-63 244.2 175 66.3
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.3e-62 243.8 175 66.3
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 1.3e-62 243.8 225 52.4
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 1.7e-62 243.4 235 54.0
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 2.2e-62 243.0 178 65.7
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 2.2e-62 243.0 178 66.3
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 4.9e-62 241.9 219 57.5
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 6.4e-62 241.5 214 59.3
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 1.1e-61 240.7 175 65.7
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 5.4e-61 238.4 175 66.3
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 7.1e-61 238.0 177 65.0
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 1.2e-60 237.3 173 66.5
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 1.2e-60 237.3 177 64.4
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 3.5e-60 235.7 161 67.1
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 7.9e-60 234.6 231 52.4
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 7.9e-60 234.6 232 54.7
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 2.3e-59 233.0 220 55.0
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 5.1e-59 231.9 169 63.3
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 3.3e-58 229.2 175 64.6
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 5.6e-58 228.4 165 63.0
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 6.2e-57 224.9 178 61.8
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 8.1e-57 224.6 176 63.6
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 8.1e-57 224.6 155 69.0
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.0e-51 207.6 147 67.3
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 2.5e-50 203.0 172 57.0
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 5.6e-50 201.8 185 57.3
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 8.2e-49 198.0 219 49.3
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 4.0e-48 195.7 130 72.3
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 7.6e-47 191.4 127 66.9
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 1.1e-45 187.6 211 50.2
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 1.1e-45 187.6 211 50.2
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 4.2e-45 185.7 120 70.0
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 3.1e-40 169.5 164 53.0
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 1.3e-38 164.1 125 60.8
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 7.2e-37 158.3 165 46.1
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 9.1e-32 141.4 230 35.7
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 4.4e-26 122.5 116 50.0
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 9.7e-18 94.7 113 45.1
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 2.2e-17 93.6 98 46.9
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 1.8e-16 90.5 65 63.1
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 3.2e-13 79.7 60 58.3
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 5.5e-13 79.0 219 26.5
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 9.4e-13 78.2 108 44.4
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 7.0e-08 62.0 43 58.1


User provided reference genes

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