Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G39.30 Capsicum annuum HOM05D005284 ORTHO05D006609 5.0e-162 574.3 279 100.0
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 8.3e-149 530.4 279 91.4
Nitab4.5_0000607g0120 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.4e-135 486.5 391 64.7
Nitab4.5_0000100g0010 Nicotiana tabacum HOM05D005284 ORTHO05D006609 2.4e-132 475.7 384 65.1
MSTRG.7559 Avicennia marina HOM05D005284 ORTHO05D006609 6.0e-131 471.1 279 78.1
Migut.M01924 Erythranthe guttata HOM05D005284 ORTHO05D006609 2.8e-128 462.2 288 75.7
Cc08_g07170 Coffea canephora HOM05D005284 ORTHO05D006609 5.2e-127 458.0 280 77.9
DCAR_000834 Daucus carota HOM05D005284 ORTHO05D006609 2.9e-125 452.2 281 76.2
Lsat_1_v5_gn_5_75320 Lactuca sativa HOM05D005284 ORTHO05D006609 9.2e-124 447.2 279 76.3
Dinv04290 Davidia involucrata HOM05D005284 ORTHO05D006609 2.1e-123 446.0 279 75.6
HanXRQChr12g0359761 Helianthus annuus HOM05D005284 ORTHO05D006609 4.6e-123 444.9 279 74.9
Gorai.011G006700 Gossypium raimondii HOM05D005284 ORTHO05D006609 5.6e-121 438.0 280 72.9
Gohir.D10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 1.2e-120 436.8 280 72.5
Atru.chr10.695 Acer truncatum HOM05D005284 ORTHO05D006609 4.7e-120 434.9 284 71.5
vmacro03466 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 1.1e-119 433.7 279 72.4
Rhsim13G0125000 Rhododendron simsii HOM05D005284 ORTHO05D006609 2.4e-119 432.6 279 74.2
Gohir.A10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 4.0e-119 431.8 280 71.8
SalBow8G0467 Salvia bowleyana HOM05D005284 ORTHO05D006609 4.0e-119 431.8 315 67.9
TAR626G0222 Trochodendron aralioides HOM05D005284 ORTHO05D006609 4.0e-119 431.8 280 71.1
Ciclev10016195m.g Citrus clementina HOM05D005284 ORTHO05D006609 6.9e-119 431.0 281 71.5
FvH4_3g11170 Fragaria vesca HOM05D005284 ORTHO05D006609 8.9e-119 430.6 281 73.0
Actinidia29265 Actinidia chinensis HOM05D005284 ORTHO05D006609 1.2e-118 430.3 279 73.1
RcHm_v2.0_Chr5g0018081 Rosa chinensis HOM05D005284 ORTHO05D006609 1.2e-118 430.3 281 73.0
Prupe.4G100600 Prunus persica HOM05D005284 ORTHO05D006609 1.5e-118 429.9 280 73.2
CANSAT78G1346 Cannabis sativa HOM05D005284 ORTHO05D006609 3.4e-118 428.7 283 71.4
Cfa000771 Carpinus fangiana HOM05D005284 ORTHO05D006609 3.4e-118 428.7 279 72.0
Sed0002797 Sechium edule HOM05D005284 ORTHO05D006609 9.9e-118 427.2 278 72.3
MD10G1243300 Malus domestica HOM05D005284 ORTHO05D006609 1.7e-117 426.4 280 72.9
Cpa.g.sc489.2 Carica papaya HOM05D005284 ORTHO05D006609 6.4e-117 424.5 280 70.7
CiPaw.09G147600 Carya illinoinensis HOM05D005284 ORTHO05D006609 1.1e-116 423.7 279 70.6
Duzib235G1425 Durio zibethinus HOM05D005284 ORTHO05D006609 9.3e-116 420.6 280 69.3
SalBow3G1375 Salvia bowleyana HOM05D005284 ORTHO05D006609 1.2e-115 420.2 305 67.9
Peaxi162Scf00155g00513 Petunia axillaris HOM05D005284 ORTHO05D006609 4.6e-115 418.3 279 74.6
Thecc.06G009000 Theobroma cacao HOM05D005284 ORTHO05D006609 4.6e-115 418.3 282 69.1
CsaV3_6G052590 Cucumis sativus L. HOM05D005284 ORTHO05D006609 7.8e-115 417.5 279 71.3
TWI38G1381 Tripterygium wilfordii HOM05D005284 ORTHO05D006609 1.7e-114 416.4 279 68.5
Eucgr.D01014 Eucalyptus grandis HOM05D005284 ORTHO05D006609 3.9e-114 415.2 280 69.6
Lj2C336G9 Lonicera japonica HOM05D005284 ORTHO05D006609 3.9e-114 415.2 279 72.0
MELO3C007049.2 Cucumis melo HOM05D005284 ORTHO05D006609 6.6e-114 414.5 279 70.3
MD05G1265300 Malus domestica HOM05D005284 ORTHO05D006609 1.9e-113 412.9 280 69.6
Lalb_Chr12g0208701 Lupinus albus HOM05D005284 ORTHO05D006609 4.3e-113 411.8 279 69.2
Aqoxy1G01504 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 5.6e-113 411.4 284 69.4
Aqoxy1G01508 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 5.6e-113 411.4 284 69.4
Potri.011G157500 Populus trichocarpa HOM05D005284 ORTHO05D006609 7.3e-113 411.0 279 68.8
Glyma.05G124100 Glycine max HOM05D005284 ORTHO05D006609 9.6e-113 410.6 279 69.5
Lj4g0006881 Lotus japonicus HOM05D005284 ORTHO05D006609 1.6e-112 409.8 279 70.6
Oeu000506.1 Olea europaea HOM05D005284 ORTHO05D006609 8.1e-112 407.5 353 58.6
Phvul.002G201500 Phaseolus vulgaris HOM05D005284 ORTHO05D006609 8.1e-112 407.5 277 69.0
Nn7g37791 Nelumbo nucifera HOM05D005284 ORTHO05D006609 3.1e-111 405.6 279 68.1
ECA234G4512 Erigeron canadensis HOM05D005284 ORTHO05D006609 4.0e-111 405.2 261 73.6
PSO541G1959 Papaver somniferum HOM05D005284 ORTHO05D006609 4.0e-111 405.2 283 68.9
PSO675G4367 Papaver somniferum HOM05D005284 ORTHO05D006609 4.0e-111 405.2 283 68.9
Glyma.08G079300 Glycine max HOM05D005284 ORTHO05D006609 1.2e-110 403.7 278 68.7
Ah.01g003600 Amaranthus hybridus HOM05D005284 ORTHO05D006609 7.6e-110 401.0 282 67.7
Medtr4g094452 Medicago truncatula HOM05D005284 ORTHO05D006609 7.6e-110 401.0 277 67.5
QL05p064527 Quercus lobata HOM05D005284 ORTHO05D006609 1.7e-109 399.8 278 68.7
VMungo0251G0080 Vigna mungo HOM05D005284 ORTHO05D006609 1.7e-109 399.8 277 68.2
Psat7g094280 Pisum sativum HOM05D005284 ORTHO05D006609 2.9e-109 399.1 274 67.5
arahy.Tifrunner.gnm1.ann1.06Y4PY Arachis hypogaea HOM05D005284 ORTHO05D006609 4.9e-109 398.3 280 68.2
COL.COLO4_26880 Corchorus olitorius HOM05D005284 ORTHO05D006609 5.4e-108 394.8 323 60.1
CARHR178630 Cardamine hirsuta HOM05D005284 ORTHO05D006609 1.2e-107 393.7 280 66.8
THA.LOC104812070 Tarenaya hassleriana HOM05D005284 ORTHO05D006609 2.7e-107 392.5 280 66.1
Ca_18306_v3 Cicer arietinum L. HOM05D005284 ORTHO05D006609 6.0e-107 391.3 285 65.3
Sp2g09280 Schrenkiella parvula HOM05D005284 ORTHO05D006609 7.9e-107 391.0 279 65.2
CDE02G0074 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 5.1e-106 388.3 268 65.3
BcaC04g21829 Brassica carinata HOM05D005284 ORTHO05D006609 8.7e-106 387.5 280 65.0
EL10Ac9g22329 Beta vulgaris HOM05D005284 ORTHO05D006609 1.1e-105 387.1 280 66.1
A06p47190 Brassica napus HOM05D005284 ORTHO05D006609 1.5e-105 386.7 280 65.0
BraA06t27590Z Brassica rapa HOM05D005284 ORTHO05D006609 2.5e-105 386.0 280 65.0
A09p21140 Brassica napus HOM05D005284 ORTHO05D006609 5.6e-105 384.8 281 64.8
BraA09t37720Z Brassica rapa HOM05D005284 ORTHO05D006609 5.6e-105 384.8 281 64.8
BcaB07g30944 Brassica carinata HOM05D005284 ORTHO05D006609 7.4e-105 384.4 280 65.0
AL8G15400 Arabidopsis lyrata HOM05D005284 ORTHO05D006609 1.6e-104 383.3 280 65.0
C09p26950 Brassica napus HOM05D005284 ORTHO05D006609 1.6e-104 383.3 281 64.8
BolC9t55580H Brassica oleracea HOM05D005284 ORTHO05D006609 1.6e-104 383.3 281 64.8
Carub.0008s0404 Capsella rubella HOM05D005284 ORTHO05D006609 1.6e-104 383.3 280 64.6
Aa31LG9G8740 Aethionema arabicum HOM05D005284 ORTHO05D006609 2.8e-104 382.5 280 65.4
Thhalv10000956m.g Eutrema salsugineum HOM05D005284 ORTHO05D006609 3.6e-104 382.1 282 64.5
BcaC06g34553 Brassica carinata HOM05D005284 ORTHO05D006609 8.1e-104 380.9 280 64.3
C07p27240 Brassica napus HOM05D005284 ORTHO05D006609 8.1e-104 380.9 280 64.3
BolC7t43252H Brassica oleracea HOM05D005284 ORTHO05D006609 8.1e-104 380.9 280 64.3
BcaC06g31615 Brassica carinata HOM05D005284 ORTHO05D006609 1.8e-103 379.8 276 64.9
HPP92_000943 Vanilla planifolia HOM05D005284 ORTHO05D006609 2.4e-103 379.4 281 64.4
CDE05G2614 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 1.5e-102 376.7 289 60.6
ATR0763G041 Amborella trichopoda HOM05D005284 ORTHO05D006609 5.8e-102 374.8 278 64.0
Manes.14G126000 Manihot esculenta HOM05D005284 ORTHO05D006609 4.9e-101 371.7 237 72.2
Solyc02g021700.4 Solanum lycopersicum HOM05D005284 ORTHO05D006609 3.5e-99 365.5 187 92.5
Sabra11G0142700 Salix brachista HOM05D005284 ORTHO05D006609 3.9e-98 362.1 237 70.0
Sc04g0004240 Simmondsia chinensis HOM05D005284 ORTHO05D006609 1.1e-97 360.5 236 72.5
FAN21G1306 Fragaria x ananassa HOM05D005284 ORTHO05D006609 3.3e-97 359.0 281 63.3
MBI18_g27137_MAGBIO Magnolia biondii HOM05D005284 ORTHO05D006609 5.6e-97 358.2 322 56.8
unitig_748.g7349 Utricularia gibba HOM05D005284 ORTHO05D006609 4.8e-96 355.1 288 59.7
FAN25G2940 Fragaria x ananassa HOM05D005284 ORTHO05D006609 8.1e-96 354.4 281 62.6
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 8.1e-96 354.4 237 71.3
FAN16G1000 Fragaria x ananassa HOM05D005284 ORTHO05D006609 3.1e-95 352.4 280 61.1
Os03g0780900 Oryza sativa ssp. japonica HOM05D005284 ORTHO05D006609 5.3e-95 351.7 306 56.5
TPR.G23781 Trifolium pratense HOM05D005284 ORTHO05D006609 8.4e-93 344.4 269 61.3
SEGI_24201 Sequoiadendron giganteum HOM05D005284 ORTHO05D006609 2.5e-92 342.8 282 59.2
SMO364G0300 Selaginella moellendorffii HOM05D005284 ORTHO05D006609 9.0e-87 324.3 261 57.9
PGR083G0243 Punica granatum HOM05D005284 ORTHO05D006609 1.2e-78 297.4 229 62.4
GSVIVG01021778001 Vitis vinifera HOM05D005284 ORTHO05D006609 2.6e-78 296.2 186 74.2
AT5G44450 Arabidopsis thaliana HOM05D005284 ORTHO05D006609 2.2e-77 293.1 223 63.2
Mapoly0083s0001 Marchantia polymorpha HOM05D005284 ORTHO05D006609 9.4e-76 287.7 275 52.4
ClCG01G025350 Citrullus lanatus HOM05D005284 ORTHO05D006609 2.7e-75 286.2 324 49.7
Zm00001eb059610 Zea mays HOM05D005284 ORTHO05D006609 5.1e-74 282.0 304 49.7
CBR_g19259 Chara braunii HOM05D005284 ORTHO05D006609 9.7e-73 277.7 268 53.4
AUR62042202 Chenopodium quinoa HOM05D005284 ORTHO05D006609 1.3e-72 277.3 228 60.1
AUR62033057 Chenopodium quinoa HOM05D005284 ORTHO05D006609 3.2e-68 262.7 188 66.0
MCO11G684 Micromonas commoda HOM05D005284 ORTHO05D006609 1.4e-66 257.3 253 49.0
PRCOL_00002523 Prasinoderma coloniale HOM05D005284 ORTHO05D006609 1.1e-65 254.2 270 47.0
Dinv04294 Davidia involucrata HOM05D005284 ORTHO05D006609 4.2e-60 235.7 144 75.0
Cre06.g274400 Chlamydomonas reinhardtii HOM05D005284 ORTHO05D006609 4.8e-56 222.2 254 43.3
AagrBONN_evm.TU.Sc2ySwM_344.3509 Anthoceros agrestis HOM05D005284 ORTHO05D006609 4.5e-54 215.7 200 54.0
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 8.5e-53 211.5 194 54.1
Hma1.2p1_0721F.1_g208670 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 9.5e-44 181.4 113 77.0
Hma1.2p1_0721F.1_g208680 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 9.5e-44 181.4 113 77.0
PGSC0003DMG400009806 Solanum tuberosum HOM05D005284 ORTHO05D006609 3.4e-41 172.9 93 88.2
CARHR114890 Cardamine hirsuta HOM05D005284 ORTHO05D006609 2.6e-33 146.7 98 70.4
vmacro21870 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 3.5e-30 136.3 89 69.7
Haze_05942 Corylus avellana HOM05D005284 ORTHO05D006609 1.7e-29 134.0 92 66.3
Cfa017779 Carpinus fangiana HOM05D005284 ORTHO05D006609 1.2e-27 127.9 96 61.5
Thecc.06G009200 Theobroma cacao HOM05D005284 ORTHO05D006609 1.6e-27 127.5 95 62.1
Thecc.06G009800 Theobroma cacao HOM05D005284 ORTHO05D006609 8.9e-26 121.7 95 61.1
Aa31LG2G17800 Aethionema arabicum HOM05D005284 ORTHO05D006609 1.3e-24 117.9 92 60.9
Thecc.06G009400 Theobroma cacao HOM05D005284 ORTHO05D006609 2.2e-24 117.1 83 63.9
Dinv09223 Davidia involucrata HOM05D005284 ORTHO05D006609 3.7e-24 116.3 93 64.5
PGSC0003DMG400015105 Solanum tuberosum HOM05D005284 ORTHO05D006609 6.4e-24 115.5 55 92.7
Dinv23919 Davidia involucrata HOM05D005284 ORTHO05D006609 1.9e-23 114.0 129 46.5
GSVIVG01037925001 Vitis vinifera HOM05D005284 ORTHO05D006609 6.6e-21 105.5 75 64.0
Pp3c22_8670 Physcomitrium patens HOM05D005284 ORTHO05D006609 1.5e-20 104.4 112 45.5
BcaB07g30524 Brassica carinata HOM05D005284 ORTHO05D006609 2.8e-19 100.1 64 62.5
CSS0000752 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 8.1e-19 98.6 51 84.3
Lalb_Chr13g0291531 Lupinus albus HOM05D005284 ORTHO05D006609 1.4e-18 97.8 99 46.5
Migut.D00154 Erythranthe guttata HOM05D005284 ORTHO05D006609 1.7e-16 90.9 85 58.8
Sabra16G0312400 Salix brachista HOM05D005284 ORTHO05D006609 1.7e-16 90.9 57 68.4
Nitab4.5_0000637g0040 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.1e-15 88.2 57 73.7
Nitab4.5_0001154g0100 Nicotiana tabacum HOM05D005284 ORTHO05D006609 7.1e-15 85.5 85 55.3
CSS0004293 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 1.6e-11 74.3 38 78.9
Glyma.04G136150 Glycine max HOM05D005284 ORTHO05D006609 3.1e-10 70.1 36 69.4
Prupe.4G100800 Prunus persica HOM05D005284 ORTHO05D006609 2.9e-08 63.5 54 50.0
A07p10120 Brassica napus HOM05D005284 ORTHO05D024396 1.4e-07 61.2 33 69.7
BraA07t28805Z Brassica rapa HOM05D005284 ORTHO05D024396 1.4e-07 61.2 33 69.7


User provided reference genes

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