Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G39.18 Capsicum annuum HOM05D005624 ORTHO05D006896 5.3e-110 401.0 196 100.0
Sopen02g002020 Solanum pennellii HOM05D005624 ORTHO05D006896 1.0e-105 386.7 196 95.9
Peaxi162Scf00334g00119 Petunia axillaris HOM05D005624 ORTHO05D006896 1.4e-105 386.3 193 96.4
PGSC0003DMG400029983 Solanum tuberosum HOM05D005624 ORTHO05D006896 3.0e-105 385.2 196 94.9
Solyc02g005603.1 Solanum lycopersicum HOM05D005624 ORTHO05D006896 7.5e-104 380.6 196 94.9
CiPaw.05G096300 Carya illinoinensis HOM05D005624 ORTHO05D006896 1.1e-94 350.1 197 85.8
MSTRG.8074 Avicennia marina HOM05D005624 ORTHO05D006896 1.2e-93 346.7 199 83.9
Prupe.1G209600 Prunus persica HOM05D005624 ORTHO05D006896 2.0e-93 345.9 199 84.4
Nitab4.5_0011777g0020 Nicotiana tabacum HOM05D005624 ORTHO05D006896 7.7e-93 344.0 193 82.4
Nitab4.5_0001089g0030 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.0e-92 343.6 193 82.9
QL03p047013 Quercus lobata HOM05D005624 ORTHO05D006896 1.7e-92 342.8 197 84.8
Cfa020947 Carpinus fangiana HOM05D005624 ORTHO05D006896 6.5e-92 340.9 199 82.4
Haze_19383 Corylus avellana HOM05D005624 ORTHO05D006896 6.5e-92 340.9 199 82.4
ClCG10G013180 Citrullus lanatus HOM05D005624 ORTHO05D006896 8.6e-92 340.5 195 82.6
Atru.chr12.1491 Acer truncatum HOM05D005624 ORTHO05D006896 1.5e-91 339.7 195 82.6
Peaxi162Scf00681g00118 Petunia axillaris HOM05D005624 ORTHO05D006896 1.5e-91 339.7 193 82.4
PGR119G0553 Punica granatum HOM05D005624 ORTHO05D006896 3.3e-91 338.6 199 82.4
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 7.2e-91 337.4 199 81.9
BolC3t13101H Brassica oleracea HOM05D005624 ORTHO05D006896 7.2e-91 337.4 199 81.9
Migut.L00899 Erythranthe guttata HOM05D005624 ORTHO05D006896 7.2e-91 337.4 198 81.8
MD13G1135700 Malus domestica HOM05D005624 ORTHO05D006896 7.2e-91 337.4 199 81.9
SalBow2G1530 Salvia bowleyana HOM05D005624 ORTHO05D006896 7.2e-91 337.4 194 80.9
Actinidia33983 Actinidia chinensis HOM05D005624 ORTHO05D006896 9.5e-91 337.0 197 82.7
Sabra01G0051200 Salix brachista HOM05D005624 ORTHO05D006896 9.5e-91 337.0 197 81.7
Ciclev10005917m.g Citrus clementina HOM05D005624 ORTHO05D006896 1.2e-90 336.7 195 82.6
Ah.03g134040 Amaranthus hybridus HOM05D005624 ORTHO05D006896 2.1e-90 335.9 195 82.1
AUR62008562 Chenopodium quinoa HOM05D005624 ORTHO05D006896 2.1e-90 335.9 195 82.6
Gohir.A08G221500 Gossypium hirsutum HOM05D005624 ORTHO05D006896 2.8e-90 335.5 197 82.7
Gohir.D08G238100 Gossypium hirsutum HOM05D005624 ORTHO05D006896 2.8e-90 335.5 197 82.7
BcaB01g05468 Brassica carinata HOM05D005624 ORTHO05D006896 3.6e-90 335.1 200 80.5
Gorai.004G253600 Gossypium raimondii HOM05D005624 ORTHO05D006896 3.6e-90 335.1 197 82.2
MD16G1131300 Malus domestica HOM05D005624 ORTHO05D006896 4.7e-90 334.7 200 80.5
Oeu032685.1 Olea europaea HOM05D005624 ORTHO05D006896 4.7e-90 334.7 195 81.5
THA.LOC104811263 Tarenaya hassleriana HOM05D005624 ORTHO05D006896 6.1e-90 334.3 199 81.4
BraA03t09846Z Brassica rapa HOM05D005624 ORTHO05D006896 8.0e-90 334.0 204 78.9
COL.COLO4_32213 Corchorus olitorius HOM05D005624 ORTHO05D006896 8.0e-90 334.0 197 81.2
CsaV3_3G043430 Cucumis sativus L. HOM05D005624 ORTHO05D006896 8.0e-90 334.0 195 81.5
AUR62033199 Chenopodium quinoa HOM05D005624 ORTHO05D006896 1.8e-89 332.8 195 81.5
Duzib128G1380 Durio zibethinus HOM05D005624 ORTHO05D006896 2.3e-89 332.4 197 80.7
Hund05398 Selenicereus undatus HOM05D005624 ORTHO05D006896 2.3e-89 332.4 195 81.0
Sc17g0003450 Simmondsia chinensis HOM05D005624 ORTHO05D006896 4.0e-89 331.6 196 82.1
AT5G11680 Arabidopsis thaliana HOM05D005624 ORTHO05D006896 5.2e-89 331.3 202 79.2
CANSAT25G1757 Cannabis sativa HOM05D005624 ORTHO05D006896 6.8e-89 330.9 201 78.1
CARHR201540 Cardamine hirsuta HOM05D005624 ORTHO05D006896 6.8e-89 330.9 202 78.7
Potri.001G072600 Populus trichocarpa HOM05D005624 ORTHO05D006896 6.8e-89 330.9 197 79.2
Hma1.2p1_0562F.1_g179050 Hydrangea macrophylla HOM05D005624 ORTHO05D006896 8.9e-89 330.5 202 79.7
TWI75G1298 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 8.9e-89 330.5 197 81.2
Cc11_g14800 Coffea canephora HOM05D005624 ORTHO05D006896 1.2e-88 330.1 196 80.6
GSVIVG01001144001 Vitis vinifera HOM05D005624 ORTHO05D006896 1.2e-88 330.1 195 81.5
AL6G22400 Arabidopsis lyrata HOM05D005624 ORTHO05D006896 1.5e-88 329.7 202 78.2
Sed0005404 Sechium edule HOM05D005624 ORTHO05D006896 1.5e-88 329.7 197 80.2
Aa31LG3G15530 Aethionema arabicum HOM05D000602 ORTHO05D001147 2.0e-88 329.3 204 78.4
Lj3A918T40 Lonicera japonica HOM05D005624 ORTHO05D006896 2.0e-88 329.3 195 81.0
Manes.08G097600 Manihot esculenta HOM05D005624 ORTHO05D006896 2.0e-88 329.3 196 80.6
CSS0016097 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 2.6e-88 328.9 197 80.7
TAR622G0071 Trochodendron aralioides HOM05D005624 ORTHO05D006896 2.6e-88 328.9 200 80.0
FvH4_4g21930 Fragaria vesca HOM05D005624 ORTHO05D006896 3.4e-88 328.6 198 79.3
FAN17G0486 Fragaria x ananassa HOM05D005624 ORTHO05D006896 3.4e-88 328.6 198 79.3
Aqoxy3G01649 Aquilegia oxysepala HOM05D005624 ORTHO05D006896 4.4e-88 328.2 197 81.2
PSO478G3843 Papaver somniferum HOM05D005624 ORTHO05D006896 5.7e-88 327.8 202 79.2
Sed0018373 Sechium edule HOM05D005624 ORTHO05D006896 5.7e-88 327.8 197 80.2
BcaC03g13386 Brassica carinata HOM05D005624 ORTHO05D006896 7.5e-88 327.4 203 77.3
PGSC0003DMG402032565 Solanum tuberosum HOM05D005624 ORTHO05D006896 7.5e-88 327.4 193 80.3
Sp6g31930 Schrenkiella parvula HOM05D005624 ORTHO05D006896 9.8e-88 327.0 200 78.0
Potri.003G158200 Populus trichocarpa HOM05D005624 ORTHO05D006896 1.3e-87 326.6 197 78.7
BolC2t06481H Brassica oleracea HOM05D005624 ORTHO05D006896 1.7e-87 326.2 203 76.8
Thhalv10014678m.g Eutrema salsugineum HOM05D005624 ORTHO05D006896 1.7e-87 326.2 206 77.2
RcHm_v2.0_Chr4g0428141 Rosa chinensis HOM05D005624 ORTHO05D006896 2.2e-87 325.9 198 79.8
Thecc.05G235200 Theobroma cacao HOM05D005624 ORTHO05D006896 2.8e-87 325.5 197 79.2
Sopen04g004320 Solanum pennellii HOM05D005624 ORTHO05D006896 1.1e-86 323.6 193 78.8
DCAR_028131 Daucus carota HOM05D005624 ORTHO05D006896 1.4e-86 323.2 199 76.4
EL10Ac7g17520 Beta vulgaris HOM05D005624 ORTHO05D006896 1.8e-86 322.8 195 80.0
Carub.0006s1018 Capsella rubella HOM05D005624 ORTHO05D006896 2.4e-86 322.4 200 77.0
PSO017G6046 Papaver somniferum HOM05D005624 ORTHO05D006896 2.4e-86 322.4 202 78.2
Eucgr.J01702 Eucalyptus grandis HOM05D005624 ORTHO05D006896 7.0e-86 320.9 195 79.0
Solyc04g009190.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 9.2e-86 320.5 193 78.2
Medtr8g070860 Medicago truncatula HOM05D005624 ORTHO05D006896 1.2e-85 320.1 198 77.8
Lj4g0021292 Lotus japonicus HOM05D005624 ORTHO05D006896 1.6e-85 319.7 200 76.5
VMungo0251G1277 Vigna mungo HOM05D005624 ORTHO05D006896 1.6e-85 319.7 198 77.3
Rhsim12G0090500 Rhododendron simsii HOM05D005624 ORTHO05D006896 2.7e-85 318.9 197 78.2
unitig_22.g6367 Utricularia gibba HOM05D005624 ORTHO05D006896 2.7e-85 318.9 199 76.9
TWI18G0768 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 3.5e-85 318.5 201 75.1
Glyma.08G266400 Glycine max HOM05D005624 ORTHO05D006896 4.5e-85 318.2 198 76.8
CiPaw.06G112400 Carya illinoinensis HOM05D005624 ORTHO05D006896 7.8e-85 317.4 209 77.0
Psat4g111480 Pisum sativum HOM05D005624 ORTHO05D006896 1.3e-84 316.6 197 77.2
Glyma.16G101200 Glycine max HOM05D005624 ORTHO05D006896 1.7e-84 316.2 198 76.8
TPR.G6115 Trifolium pratense HOM05D005624 ORTHO05D006896 2.3e-84 315.8 202 76.7
Phvul.003G274200 Phaseolus vulgaris HOM05D005624 ORTHO05D006896 2.9e-84 315.5 201 75.6
Lsat_1_v5_gn_1_78160 Lactuca sativa HOM05D005624 ORTHO05D006896 3.8e-84 315.1 196 78.1
HPP92_013550 Vanilla planifolia HOM05D005624 ORTHO05D006896 2.5e-83 312.4 193 78.2
ECA236G4393 Erigeron canadensis HOM05D000127 ORTHO05D000243 5.6e-83 311.2 193 75.1
Zm00001eb318180 Zea mays HOM05D005624 ORTHO05D006896 5.6e-83 311.2 198 76.8
arahy.Tifrunner.gnm1.ann1.CA7SJ1 Arachis hypogaea HOM05D005624 ORTHO05D006896 9.5e-83 310.5 199 74.4
arahy.Tifrunner.gnm1.ann1.YB0CZG Arachis hypogaea HOM05D005624 ORTHO05D006896 9.5e-83 310.5 199 74.4
Zm00001eb102600 Zea mays HOM05D005624 ORTHO05D006896 2.8e-82 308.9 198 76.3
HanXRQChr10g0312121 Helianthus annuus HOM05D005624 ORTHO05D006896 6.1e-82 307.8 199 75.9
unitig_8.g3112 Utricularia gibba HOM05D005624 ORTHO05D006896 1.0e-81 307.0 223 69.1
ATR0582G264 Amborella trichopoda HOM05D005624 ORTHO05D006896 4.0e-81 305.1 201 72.6
Peaxi162Scf00021g02113 Petunia axillaris HOM05D005624 ORTHO05D006896 1.2e-80 303.5 195 72.8
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 1.7e-76 289.7 183 76.5
MELO3C026760.2 Cucumis melo HOM05D005624 ORTHO05D006896 3.3e-75 285.4 169 79.9
Nitab4.5_0000069g0230 Nicotiana tabacum HOM05D005624 ORTHO05D006896 9.8e-72 273.9 196 68.9
Nitab4.5_0004301g0080 Nicotiana tabacum HOM05D005624 ORTHO05D006896 4.9e-71 271.6 196 68.4
Duzib177G0503 Durio zibethinus HOM05D005624 ORTHO05D006896 2.4e-70 269.2 197 69.0
Lsat_1_v5_gn_5_173840 Lactuca sativa HOM05D005624 ORTHO05D006896 2.3e-68 262.7 196 65.8
HanXRQChr01g0012261 Helianthus annuus HOM05D005624 ORTHO05D006896 5.0e-68 261.5 197 65.0
Zm00001eb071390 Zea mays HOM05D005624 ORTHO05D006896 8.6e-68 260.8 163 77.9
vmacro16032 Vaccinium macrocarpon HOM05D005624 ORTHO05D006896 3.6e-66 255.4 165 73.9
Pp3c7_9270 Physcomitrium patens HOM05D005624 ORTHO05D006896 1.2e-64 250.4 201 62.7
Solyc01g008220.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 1.5e-64 250.0 191 64.4
SMO164G0111 Selaginella moellendorffii HOM05D005624 ORTHO05D006896 2.0e-64 249.6 196 60.2
Dinv02966 Davidia involucrata HOM05D005624 ORTHO05D006896 7.8e-61 237.7 142 79.6
AagrBONN_evm.TU.Sc2ySwM_117.3158 Anthoceros agrestis HOM05D005624 ORTHO05D006896 1.5e-59 233.4 198 59.1
Mapoly0097s0090 Marchantia polymorpha HOM05D005624 ORTHO05D006896 1.9e-59 233.0 192 58.3
MBI11_g04265_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 4.7e-58 228.4 159 67.9
CAN.G619.7 Capsicum annuum HOM05D005624 ORTHO05D006896 8.1e-58 227.6 140 77.9
MBI07_g41258_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 8.4e-55 217.6 126 81.7
PGSC0003DMG400016363 Solanum tuberosum HOM05D005624 ORTHO05D006896 1.1e-49 200.7 166 62.0
Lalb_Chr05g0228971 Lupinus albus HOM05D005624 ORTHO05D006896 2.2e-47 193.0 124 70.2
Zm00001eb036000 Zea mays HOM05D005624 ORTHO05D006896 3.8e-47 192.2 119 77.3
Zm00001eb052330 Zea mays HOM05D005624 ORTHO05D006896 3.8e-47 192.2 119 76.5
Gohir.A13G159151 Gossypium hirsutum HOM05D005624 ORTHO05D006896 6.4e-47 191.4 138 70.3
Gorai.013G198700 Gossypium raimondii HOM05D005624 ORTHO05D006896 1.1e-46 190.7 142 68.3
Migut.L00595 Erythranthe guttata HOM05D005624 ORTHO05D006896 6.9e-41 171.4 97 82.5
CBR_g24147 Chara braunii HOM05D005624 ORTHO05D006896 5.1e-36 155.2 151 50.3
C02p05330 Brassica napus HOM05D005624 ORTHO05D006896 2.6e-32 142.9 96 71.9
CAN.G282.51 Capsicum annuum HOM05D005624 ORTHO05D006896 7.1e-30 134.8 197 43.1
Cre03.g189100 Chlamydomonas reinhardtii HOM05D005624 ORTHO05D006896 1.6e-29 133.7 198 39.9
CSS0031660 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 1.1e-25 120.9 100 62.0
Cc08_g00010 Coffea canephora HOM05D005624 ORTHO05D006896 4.6e-21 105.5 75 68.0
SEGI_14660 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 4.6e-21 105.5 66 71.2
Cc10_g16310 Coffea canephora HOM05D005624 ORTHO05D006896 1.0e-20 104.4 75 70.7
Cc06_g22650 Coffea canephora HOM05D005624 ORTHO05D006896 1.0e-15 87.8 75 62.7
Dinv02968 Davidia involucrata HOM05D005624 ORTHO05D006896 9.4e-14 81.3 57 70.2
Lalb_Chr05g0228961 Lupinus albus HOM05D005624 ORTHO05D006896 1.2e-08 64.3 32 90.6
Os09g0512900 Oryza sativa ssp. japonica HOM05D005624 ORTHO05D006896 5.9e-08 62.0 36 80.6
Lsat_1_v5_gn_4_78441 Lactuca sativa HOM05D005624 ORTHO05D006896 3.8e-07 59.3 35 74.3
SEGI_32969 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 5.5e-06 55.5 32 81.2


User provided reference genes

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