Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 0.0e+00 1458.0 759 100.0
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 0.0e+00 1305.4 758 89.2
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 0.0e+00 1248.8 764 84.8
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 0.0e+00 1233.0 772 83.7
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 8.8e-294 1013.4 575 90.3
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 1.1e-280 969.9 766 66.4
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 1.5e-272 943.0 767 66.0
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 7.2e-272 940.6 531 91.5
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 1.8e-270 936.0 766 64.4
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 1.6e-263 912.9 767 61.8
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 5.4e-259 897.9 733 63.7
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 6.0e-258 894.4 759 60.3
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 5.6e-256 887.9 763 60.0
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 4.0e-254 881.7 758 59.8
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 4.4e-253 878.2 806 58.7
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 2.2e-252 875.9 756 58.9
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 2.2e-252 875.9 773 59.0
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 3.7e-252 875.2 757 58.3
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 5.4e-251 871.3 764 59.6
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 1.2e-250 870.2 770 58.7
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 1.7e-249 866.3 759 57.8
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 5.0e-249 864.8 760 58.6
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 6.6e-249 864.4 758 58.4
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 2.1e-247 859.4 765 59.2
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 2.3e-246 855.9 765 59.9
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 4.0e-246 855.1 769 57.1
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 4.0e-246 855.1 785 57.7
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 1.5e-245 853.2 766 60.6
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 4.4e-245 851.7 757 58.3
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 2.2e-244 849.4 760 58.2
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 2.2e-244 849.4 761 58.3
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 4.9e-244 848.2 758 58.3
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.4e-243 846.7 757 58.3
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 2.4e-243 845.9 763 57.3
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 2.1e-242 842.8 760 59.5
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 6.0e-242 841.3 756 56.9
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.5e-240 835.9 774 56.7
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 1.2e-239 833.6 765 57.6
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 2.8e-239 832.4 748 58.2
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 6.2e-239 831.2 765 59.6
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 8.1e-239 830.9 757 57.3
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 3.1e-238 828.9 762 56.8
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.0e-237 826.2 769 56.6
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 3.4e-237 825.5 757 56.1
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 2.9e-236 822.4 758 56.7
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 4.9e-236 821.6 709 59.2
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 6.4e-236 821.2 764 56.7
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 8.4e-236 820.8 764 55.6
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 3.0e-233 812.4 762 56.4
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 3.9e-233 812.0 776 55.5
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 8.7e-233 810.8 779 55.5
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 2.5e-232 809.3 761 55.8
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 1.2e-231 807.0 761 55.5
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 1.6e-231 806.6 765 58.6
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 4.7e-231 805.1 762 55.9
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 6.2e-231 804.7 759 55.6
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 6.2e-231 804.7 765 55.6
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 2.4e-230 802.7 758 55.0
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 3.4e-229 798.9 771 54.9
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 4.4e-229 798.5 758 55.5
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 2.9e-228 795.8 715 58.3
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 4.9e-228 795.0 758 55.0
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 6.4e-228 794.7 745 58.8
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 1.4e-227 793.5 732 57.0
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 2.4e-227 792.7 765 55.8
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 4.6e-226 788.5 758 55.4
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 3.0e-225 785.8 759 54.3
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 5.1e-225 785.0 755 55.2
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 4.3e-224 781.9 781 53.4
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 1.3e-223 780.4 789 53.5
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 1.4e-222 776.9 781 53.6
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 1.8e-222 776.5 767 53.8
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 3.1e-222 775.8 759 54.2
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 5.8e-221 771.5 738 60.2
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 2.9e-220 769.2 771 54.0
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 6.4e-220 768.1 776 53.1
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 3.2e-219 765.8 776 52.7
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 3.2e-219 765.8 684 57.3
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 2.4e-211 739.6 808 51.5
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 1.3e-209 733.8 759 52.3
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 1.1e-206 724.2 727 53.2
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 2.0e-205 719.9 575 63.0
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 2.6e-205 719.5 727 53.6
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 5.5e-203 711.8 574 62.4
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 5.5e-203 711.8 733 55.4
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 9.3e-203 711.1 759 50.9
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 1.1e-198 697.6 569 62.0
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 3.1e-198 696.0 569 62.4
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 5.9e-197 691.8 765 50.3
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 5.9e-197 691.8 764 50.5
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 2.2e-196 689.9 566 62.4
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 6.5e-196 688.3 761 49.5
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 6.5e-196 688.3 763 49.1
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 1.4e-195 687.2 516 69.0
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 8.8e-193 677.9 742 50.7
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 4.8e-191 672.2 569 60.5
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 1.9e-187 660.2 645 55.7
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 4.2e-187 659.1 657 52.8
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 7.9e-186 654.8 762 49.9
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 5.1e-185 652.1 461 72.5
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 8.8e-185 651.4 571 59.2
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 7.4e-184 648.3 706 50.6
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 1.2e-178 630.9 529 64.7
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 4.8e-175 619.0 577 54.6
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 2.1e-170 603.6 763 47.2
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 1.5e-163 580.9 478 69.0
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 1.7e-156 557.4 769 41.0
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 5.0e-156 555.8 765 44.1
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.3e-153 547.0 526 54.2
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 2.7e-149 533.5 638 47.5
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 7.8e-141 505.4 291 88.3
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 3.0e-140 503.4 502 51.6
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 1.1e-118 431.8 333 64.6
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 4.6e-117 426.4 434 50.7
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 2.1e-109 401.0 326 62.6
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 8.7e-108 395.6 480 46.9
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 3.6e-106 390.2 391 54.7
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 9.0e-105 385.6 817 30.8
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 1.4e-102 378.3 558 42.1
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 1.6e-101 374.8 284 65.1
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 1.1e-89 335.5 290 60.3
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 4.3e-83 313.5 734 29.4
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 1.2e-80 305.4 284 58.5
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 3.4e-80 303.9 230 66.5
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 2.5e-78 297.7 761 27.9
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 9.7e-75 285.8 345 45.2
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 6.3e-66 256.5 177 71.8
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 6.7e-60 236.5 208 57.2
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 1.2e-56 225.7 204 53.9
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 4.7e-53 213.8 633 25.8
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 4.5e-40 170.6 430 31.6
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 7.7e-40 169.9 141 61.0
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.1e-38 166.0 416 31.5
Atru.chr12.2374 Acer truncatum HOM05D004734 ORTHO05D006019 5.5e-38 163.7 186 44.6
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 2.8e-37 161.4 243 41.2
Medtr5g084823 Medicago truncatula HOM05D004734 ORTHO05D006019 2.5e-30 138.3 187 40.1
SHI10095 Sapria himalayana HOM05D004734 ORTHO05D006019 3.3e-30 137.9 238 37.0
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 4.9e-26 124.0 108 60.2
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 1.1e-25 122.9 97 66.0
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 1.6e-24 119.0 85 68.2
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 1.3e-23 115.9 85 68.2
SMO278G0012 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 1.7e-18 99.0 291 26.5
Nitab4.5_0001356g0190 Nicotiana tabacum HOM05D000224 ORTHO05D001489 3.7e-18 97.8 124 44.4
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.4e-17 95.9 76 63.2
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.5e-14 85.9 135 43.7
HPP92_000155 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.9e-14 85.5 218 32.1
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 5.2e-12 77.4 142 36.6
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 2.9e-10 71.6 105 33.3
Cfa026774 Carpinus fangiana HOM05D004734 ORTHO05D126311 9.2e-09 66.6 182 25.3
FvH4_3g20454 Fragaria vesca HOM05D004734 ORTHO05D196162 5.1e-07 60.8 111 39.6
PRCOL_00004220 Prasinoderma coloniale HOM05D004734 ORTHO05D006019 5.1e-07 60.8 461 22.1
Glyma.20G074700 Glycine max HOM05D004734 ORTHO05D213795 7.3e-06 57.0 46 58.7


User provided reference genes

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