Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G385.14 Capsicum annuum HOM05D002282 ORTHO05D002403 0.0e+00 1118.2 671 100.0
CAN.G407.112 Capsicum annuum HOM05D002282 ORTHO05D002403 1.0e-75 288.9 217 70.5
Sopen03g035310 Solanum pennellii HOM05D002282 ORTHO05D002403 1.2e-71 275.4 217 66.4
Solyc03g116380.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 2.8e-70 270.8 217 65.0
PGSC0003DMG400000602 Solanum tuberosum HOM05D002282 ORTHO05D002403 8.3e-70 269.2 217 65.0
Nitab4.5_0006574g0100 Nicotiana tabacum HOM05D002282 ORTHO05D002403 1.9e-66 258.1 216 63.0
Peaxi162Scf00274g00850 Petunia axillaris HOM05D002282 ORTHO05D002403 4.7e-65 253.4 217 60.8
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 1.2e-63 248.8 216 60.6
Dinv30569 Davidia involucrata HOM05D002282 ORTHO05D002403 7.3e-34 149.8 223 36.8
GSVIVG01017246001 Vitis vinifera HOM05D002282 ORTHO05D002403 9.6e-34 149.4 223 36.8
CAN.G637.56 Capsicum annuum HOM05D002304 ORTHO05D002363 4.8e-33 147.1 92 83.7
Ciclev10025131m.g Citrus clementina HOM05D002282 ORTHO05D002403 9.0e-32 142.9 218 35.8
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 1.7e-30 138.7 218 34.9
COL.COLO4_12890 Corchorus olitorius HOM05D002282 ORTHO05D002403 8.4e-30 136.3 205 38.0
Actinidia01770 Actinidia chinensis HOM05D002282 ORTHO05D002403 1.1e-29 136.0 219 37.9
Cc04_g04050 Coffea canephora HOM05D002282 ORTHO05D002403 7.9e-28 129.8 217 33.6
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 7.9e-28 129.8 205 34.6
vmacro18959 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 1.7e-27 128.6 177 39.0
Nn2g11949 Nelumbo nucifera HOM05D002282 ORTHO05D002403 3.0e-27 127.9 217 32.3
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 5.1e-27 127.1 217 34.6
Gohir.A05G124900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 1.9e-26 125.2 193 35.8
Gohir.D05G125900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 3.3e-26 124.4 193 35.8
Duzib235G0185 Durio zibethinus HOM05D002282 ORTHO05D002403 5.6e-26 123.6 124 43.5
Rhsim08G0216500 Rhododendron simsii HOM05D002282 ORTHO05D002403 2.8e-25 121.3 228 32.9
Manes.04G116700 Manihot esculenta HOM05D002282 ORTHO05D002403 6.9e-24 116.7 220 32.3
VMungo0331G0533 Vigna mungo HOM05D002282 ORTHO05D002403 2.6e-23 114.8 214 33.2
Glyma.07G032500 Glycine max HOM05D002282 ORTHO05D002403 4.5e-23 114.0 223 33.2
CSS0048718 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 5.8e-23 113.6 177 36.2
Gorai.009G129900 Gossypium raimondii HOM05D002282 ORTHO05D002403 7.6e-23 113.2 221 33.0
Ca_20422_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 9.9e-23 112.8 166 35.5
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 9.9e-23 112.8 214 32.7
Solyc03g097760.2 Solanum lycopersicum HOM05D002304 ORTHO05D002363 2.9e-22 111.3 141 58.2
Sopen03g028520 Solanum pennellii HOM05D002304 ORTHO05D002363 3.8e-22 110.9 141 58.2
Lalb_Chr04g0262501 Lupinus albus HOM05D002282 ORTHO05D002403 6.4e-22 110.2 214 33.2
Glyma.08G210000 Glycine max HOM05D002282 ORTHO05D002403 8.4e-22 109.8 217 32.3
DCAR_025482 Daucus carota HOM05D002282 ORTHO05D002403 1.1e-21 109.4 213 31.0
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 2.1e-20 105.1 217 28.6
MELO3C023398.2 Cucumis melo HOM05D002282 ORTHO05D002403 3.5e-20 104.4 213 30.0
CsaV3_7G032650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 3.5e-20 104.4 213 29.1
Lj3g0004862 Lotus japonicus HOM05D002282 ORTHO05D002403 3.5e-20 104.4 219 29.7
Nitab4.5_0007858g0020 Nicotiana tabacum HOM05D002304 ORTHO05D002363 4.6e-20 104.0 127 56.7
Sed0027048 Sechium edule HOM05D002282 ORTHO05D002403 4.6e-20 104.0 213 30.0
Phvul.010G153600 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 6.0e-20 103.6 199 29.6
ClCG09G002680 Citrullus lanatus HOM05D002282 ORTHO05D002403 1.0e-19 102.8 179 33.0
PGSC0003DMG400019853 Solanum tuberosum HOM05D002304 ORTHO05D002363 1.3e-19 102.4 141 53.2
MBI04_g10418_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 1.8e-19 102.1 216 32.9
Sed0003011 Sechium edule HOM05D002282 ORTHO05D002403 3.9e-19 100.9 213 29.1
Psat7g255200 Pisum sativum HOM05D002282 ORTHO05D002403 1.5e-18 99.0 207 30.4
TPR.G38626 Trifolium pratense HOM05D002282 ORTHO05D002403 9.6e-18 96.3 207 29.0
Cc03_g01330 Coffea canephora HOM05D002282 ORTHO05D002403 4.8e-17 94.0 226 27.0
THA.LOC104812495 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 1.1e-16 92.8 113 39.8
Zm00001eb013980 Zea mays HOM05D002282 ORTHO05D002403 3.1e-16 91.3 243 27.6
HPP92_021476 Vanilla planifolia HOM05D002282 ORTHO05D002403 4.0e-16 90.9 203 31.0
Migut.G00119 Erythranthe guttata HOM05D002282 ORTHO05D002403 5.3e-16 90.5 217 27.2
Medtr4g011300 Medicago truncatula HOM05D002282 ORTHO05D002403 5.3e-16 90.5 207 28.5
CDE07G0270 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 1.2e-15 89.4 216 28.2
MBI19_g05149_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 3.4e-15 87.8 217 26.7
GSVIVG01035079001 Vitis vinifera HOM05D002282 ORTHO05D002403 3.4e-15 87.8 221 27.6
HanXRQChr03g0084951 Helianthus annuus HOM05D002282 ORTHO05D002403 4.5e-15 87.4 233 23.2
Cpa.g.sc336.4 Carica papaya HOM05D002282 ORTHO05D002403 5.8e-15 87.0 214 28.0
Sc19g0003390 Simmondsia chinensis HOM05D002282 ORTHO05D002403 5.8e-15 87.0 217 26.3
Ciclev10004544m.g Citrus clementina HOM05D002282 ORTHO05D002403 7.6e-15 86.7 237 24.5
Lsat_1_v5_gn_6_76141 Lactuca sativa HOM05D002282 ORTHO05D002403 7.6e-15 86.7 220 24.5
Psat4g024880 Pisum sativum HOM05D002282 ORTHO05D002403 1.0e-14 86.3 217 27.2
TPR.G4827 Trifolium pratense HOM05D002282 ORTHO05D002403 1.0e-14 86.3 217 27.2
Sabra10G0004600 Salix brachista HOM05D002282 ORTHO05D002403 1.3e-14 85.9 237 25.7
TAR365G0623 Trochodendron aralioides HOM05D002282 ORTHO05D002403 1.3e-14 85.9 261 25.7
A10p26480 Brassica napus HOM05D002282 ORTHO05D002403 3.8e-14 84.3 238 26.1
BraA10t44705Z Brassica rapa HOM05D002282 ORTHO05D002403 3.8e-14 84.3 238 26.1
Manes.15G008900 Manihot esculenta HOM05D002282 ORTHO05D002403 3.8e-14 84.3 236 25.4
Lj5A688G9 Lonicera japonica HOM05D002282 ORTHO05D002403 4.9e-14 84.0 217 26.7
TWI09G1448 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 6.5e-14 83.6 224 25.0
arahy.Tifrunner.gnm1.ann1.3PI56D Arachis hypogaea HOM05D002282 ORTHO05D002403 8.4e-14 83.2 217 26.3
C09p65630 Brassica napus HOM05D002282 ORTHO05D002403 8.4e-14 83.2 236 25.4
AUR62035074 Chenopodium quinoa HOM05D002282 ORTHO05D002403 8.4e-14 83.2 214 25.7
BraA02t05075Z Brassica rapa HOM05D002282 ORTHO05D002403 1.1e-13 82.8 238 25.6
Os01g0649000 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 1.1e-13 82.8 128 32.8
Prupe.1G129200 Prunus persica HOM05D002282 ORTHO05D002403 1.1e-13 82.8 239 26.4
BcaB08g37077 Brassica carinata HOM05D002282 ORTHO05D002403 1.4e-13 82.4 238 25.2
CANSAT35G1122 Cannabis sativa HOM05D002282 ORTHO05D002403 1.4e-13 82.4 225 26.7
Carub.0006s0971 Capsella rubella HOM05D002282 ORTHO05D002403 1.4e-13 82.4 246 24.8
Eucgr.A01301 Eucalyptus grandis HOM05D002282 ORTHO05D002403 1.4e-13 82.4 219 24.2
Potri.010G005400 Populus trichocarpa HOM05D002282 ORTHO05D002403 1.4e-13 82.4 237 24.1
BcaC04g19248 Brassica carinata HOM05D002282 ORTHO05D002403 1.9e-13 82.0 236 25.0
BolC9t59386H Brassica oleracea HOM05D002282 ORTHO05D002403 1.9e-13 82.0 236 25.0
CSS0020497 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 2.5e-13 81.6 219 25.6
Oeu006431.1 Olea europaea HOM05D002282 ORTHO05D002403 2.5e-13 81.6 227 24.7
Thecc.04G291300 Theobroma cacao HOM05D002282 ORTHO05D002403 2.5e-13 81.6 214 24.3
Lj3A826G75 Lonicera japonica HOM05D002282 ORTHO05D002403 3.2e-13 81.3 217 26.3
Sopen02g009400 Solanum pennellii HOM05D002282 ORTHO05D002403 3.2e-13 81.3 217 26.7
PGSC0003DMG400011805 Solanum tuberosum HOM05D002282 ORTHO05D002403 3.2e-13 81.3 217 26.3
THA.LOC104805829 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 3.2e-13 81.3 226 26.5
CAN.G306.6 Capsicum annuum HOM05D002282 ORTHO05D002403 4.2e-13 80.9 259 24.7
MSTRG.10121 Avicennia marina HOM05D002282 ORTHO05D002403 5.5e-13 80.5 226 23.9
MD13G1161900 Malus domestica HOM05D002282 ORTHO05D002403 5.5e-13 80.5 219 25.6
PSO407G0173 Papaver somniferum HOM05D002282 ORTHO05D002403 5.5e-13 80.5 244 24.2
AUR62016160 Chenopodium quinoa HOM05D002282 ORTHO05D002403 7.1e-13 80.1 214 24.8
Lalb_Chr12g0201081 Lupinus albus HOM05D002282 ORTHO05D002403 7.1e-13 80.1 216 25.5
Aa31LG3G15950 Aethionema arabicum HOM05D002282 ORTHO05D002403 9.3e-13 79.7 215 27.0
EL10Ac3g04935 Beta vulgaris HOM05D002282 ORTHO05D002403 9.3e-13 79.7 223 24.7
A02p00910 Brassica napus HOM05D002282 ORTHO05D002403 9.3e-13 79.7 238 24.8
PSO170G5250 Papaver somniferum HOM05D002282 ORTHO05D002403 9.3e-13 79.7 244 24.2
ClCG06G004860 Citrullus lanatus HOM05D002282 ORTHO05D002403 1.2e-12 79.3 171 29.2
vmacro13795 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 1.6e-12 79.0 217 25.3
Lj4g0005439 Lotus japonicus HOM05D002282 ORTHO05D002403 2.1e-12 78.6 217 25.3
Lj4g0022588 Lotus japonicus HOM05D002282 ORTHO05D002403 2.1e-12 78.6 217 25.3
Solyc02g030080.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 2.1e-12 78.6 217 26.3
Cfa006257 Carpinus fangiana HOM05D002282 ORTHO05D004557 3.5e-12 77.8 243 24.7
Peaxi162Scf00065g01016 Petunia axillaris HOM05D002282 ORTHO05D002403 3.5e-12 77.8 257 23.3
Medtr4g120740 Medicago truncatula HOM05D002282 ORTHO05D002403 4.6e-12 77.4 158 29.7
Ah.04g155130 Amaranthus hybridus HOM05D002282 ORTHO05D002403 6.0e-12 77.0 217 26.3
BcaNung01920 Brassica carinata HOM05D002282 ORTHO05D002403 6.0e-12 77.0 238 24.4
Sed0017061 Sechium edule HOM05D002282 ORTHO05D002403 7.9e-12 76.6 157 29.3
Dinv29708 Davidia involucrata HOM05D002282 ORTHO05D002403 1.3e-11 75.9 242 23.6
ECA240G0914 Erigeron canadensis HOM05D002282 ORTHO05D002403 1.8e-11 75.5 199 23.1
Glyma.07G244100 Glycine max HOM05D002282 ORTHO05D002403 1.8e-11 75.5 217 24.4
Cfa015451 Carpinus fangiana HOM05D002282 ORTHO05D002403 2.3e-11 75.1 243 24.7
Gohir.D09G062700 Gossypium hirsutum HOM05D002282 ORTHO05D002403 3.0e-11 74.7 214 24.8
Os03g0300300 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 3.0e-11 74.7 220 29.1
Rhsim02G0006600 Rhododendron simsii HOM05D002282 ORTHO05D002403 3.0e-11 74.7 227 24.2
ATR0693G215 Amborella trichopoda HOM05D002282 ORTHO05D002403 3.9e-11 74.3 212 23.1
vmacro02293 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 3.9e-11 74.3 217 24.4
Cpa.g.sc9.113 Carica papaya HOM05D002282 ORTHO05D002403 5.1e-11 73.9 259 23.9
Haze_04567 Corylus avellana HOM05D002282 ORTHO05D002403 6.7e-11 73.6 146 29.5
Nitab4.5_0001298g0020 Nicotiana tabacum HOM05D002282 ORTHO05D002403 6.7e-11 73.6 130 33.1
DCAR_027041 Daucus carota HOM05D002282 ORTHO05D002403 8.7e-11 73.2 242 22.3
MELO3C021295.2 Cucumis melo HOM05D002282 ORTHO05D002403 1.5e-10 72.4 161 31.1
Nitab4.5_0004432g0020 Nicotiana tabacum HOM05D002282 ORTHO05D002403 1.5e-10 72.4 130 33.8
QL06p010943 Quercus lobata HOM05D002282 ORTHO05D002403 1.5e-10 72.4 248 23.4
arahy.Tifrunner.gnm1.ann1.C0TKG5 Arachis hypogaea HOM05D002282 ORTHO05D002403 1.9e-10 72.0 217 25.8
CiPaw.01G144200 Carya illinoinensis HOM05D002282 ORTHO05D002403 2.5e-10 71.6 228 24.6
MSTRG.21910 Avicennia marina HOM05D002282 ORTHO05D002403 3.3e-10 71.2 127 28.3
Peaxi162Scf00171g00115 Petunia axillaris HOM05D002304 ORTHO05D002363 3.3e-10 71.2 133 43.6
CDE05G3405 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 4.3e-10 70.9 202 23.8
Aqoxy7G01538 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 7.4e-10 70.1 227 22.5
Glyma.17G029800 Glycine max HOM05D002282 ORTHO05D002403 7.4e-10 70.1 217 24.9
SGA_v2.0_scaffold146G36232 Striga asiatica HOM05D002282 ORTHO05D002403 7.4e-10 70.1 226 25.2
PGR031G2323 Punica granatum HOM05D002282 ORTHO05D002403 1.3e-09 69.3 211 23.2
PGSC0003DMG400046273 Solanum tuberosum HOM05D008041 ORTHO05D000385 1.6e-09 68.9 154 35.1
CDE11G1255 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 4.8e-09 67.4 128 25.8
Sopen12g016970 Solanum pennellii HOM05D008041 ORTHO05D000385 4.8e-09 67.4 117 45.3
Nitab4.5_0000378g0050 Nicotiana tabacum HOM05D002282 ORTHO05D002403 6.2e-09 67.0 130 30.8
Solyc10g061845.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 6.2e-09 67.0 177 35.0
Sopen08g019920 Solanum pennellii HOM05D008041 ORTHO05D000385 6.2e-09 67.0 162 36.4
VMungo1215G3370 Vigna mungo HOM05D002282 ORTHO05D002403 6.9e-08 63.5 206 22.8
Gorai.006G077500 Gossypium raimondii HOM05D002282 ORTHO05D002403 1.2e-07 62.8 214 23.8
Gohir.A09G063800 Gossypium hirsutum HOM05D002282 ORTHO05D002403 1.5e-07 62.4 214 24.8
Sopen07g020910 Solanum pennellii HOM05D008041 ORTHO05D000385 2.0e-07 62.0 162 32.7
Sopen01g006470 Solanum pennellii HOM05D008041 ORTHO05D000385 2.6e-07 61.6 181 32.0
Sopen03g012270 Solanum pennellii HOM05D008041 ORTHO05D000385 2.6e-07 61.6 181 32.0
Sopen04g017170 Solanum pennellii HOM05D008041 ORTHO05D000385 2.6e-07 61.6 181 32.0
Sopen12g016000 Solanum pennellii HOM05D008041 ORTHO05D000385 2.6e-07 61.6 181 32.0
Duzib052G0572 Durio zibethinus HOM05D002282 ORTHO05D002403 4.5e-07 60.8 214 22.4
Phvul.003G108800 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 5.8e-07 60.5 206 21.8
Sopen01g007850 Solanum pennellii HOM05D008041 ORTHO05D000385 7.6e-07 60.1 181 31.5
Sopen07g025660 Solanum pennellii HOM05D008041 ORTHO05D000385 7.6e-07 60.1 181 31.5
AUR62044456 Chenopodium quinoa HOM05D002282 ORTHO05D002403 1.7e-06 58.9 174 22.4
Haze_01137 Corylus avellana HOM05D002282 ORTHO05D002403 2.2e-06 58.5 91 34.1
Sopen09g017170 Solanum pennellii HOM05D008041 ORTHO05D000385 6.5e-06 57.0 181 32.0


User provided reference genes

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