Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 4.9e-148 527.7 255 100.0
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 5.1e-129 464.5 284 83.1
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 1.8e-121 439.5 284 79.2
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 3.9e-121 438.3 284 78.5
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 5.1e-121 438.0 284 78.9
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 3.9e-105 385.2 284 71.1
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 3.3e-104 382.1 281 69.8
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 2.8e-87 325.9 251 64.9
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 1.1e-86 323.9 281 61.2
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 1.4e-86 323.6 252 63.9
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 7.0e-86 321.2 252 65.1
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 1.2e-85 320.5 271 61.6
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 1.6e-85 320.1 244 67.2
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 2.0e-85 319.7 258 64.7
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 3.5e-85 318.9 261 60.5
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 3.5e-85 318.9 252 62.7
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 3.5e-85 318.9 251 63.3
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 5.9e-85 318.2 255 63.1
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 1.7e-84 316.6 251 64.1
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 2.2e-84 316.2 256 61.3
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 6.5e-84 314.7 246 65.0
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 1.5e-83 313.5 251 62.5
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 1.5e-83 313.5 258 62.8
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 2.5e-83 312.8 252 62.7
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 2.5e-83 312.8 252 62.7
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 2.5e-83 312.8 252 61.9
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 5.5e-83 311.6 262 59.9
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 1.6e-82 310.1 257 61.1
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 2.7e-82 309.3 257 61.1
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 3.6e-82 308.9 169 89.3
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 1.0e-81 307.4 251 62.2
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 1.4e-81 307.0 249 61.0
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 3.0e-81 305.8 279 56.3
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 3.0e-81 305.8 255 63.5
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 3.0e-81 305.8 251 61.8
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 5.2e-81 305.1 252 60.7
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 6.8e-81 304.7 236 64.8
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 1.2e-80 303.9 252 60.3
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 2.0e-80 303.1 255 58.8
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 2.6e-80 302.8 280 57.5
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 2.6e-80 302.8 282 55.0
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 2.6e-80 302.8 242 63.6
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 4.4e-80 302.0 251 62.2
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 4.4e-80 302.0 251 62.2
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 5.7e-80 301.6 251 61.8
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 7.5e-80 301.2 252 59.9
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 9.8e-80 300.8 247 60.7
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 9.8e-80 300.8 251 61.8
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 2.8e-79 299.3 285 53.7
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 4.8e-79 298.5 253 61.3
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 8.3e-79 297.7 251 61.4
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 1.1e-78 297.4 284 57.0
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 2.4e-78 296.2 284 56.7
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 2.4e-78 296.2 284 56.7
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 3.1e-78 295.8 282 53.5
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 3.1e-78 295.8 263 57.8
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 7.0e-78 294.7 251 60.6
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 7.0e-78 294.7 277 54.9
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 9.1e-78 294.3 251 59.4
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 2.0e-77 293.1 252 58.7
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 2.0e-77 293.1 275 55.6
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 5.9e-77 291.6 241 61.8
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 7.7e-77 291.2 246 59.8
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 7.7e-77 291.2 275 55.3
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 7.7e-77 291.2 275 55.3
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 7.7e-77 291.2 246 59.8
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 2.3e-76 289.7 257 58.4
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 3.8e-76 288.9 244 61.9
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 5.0e-76 288.5 241 62.2
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.9e-75 286.6 158 87.3
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 3.3e-75 285.8 266 54.1
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 5.5e-75 285.0 285 56.5
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 4.7e-74 282.0 303 50.8
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 2.3e-73 279.6 253 56.5
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 3.0e-73 279.3 251 57.4
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 3.0e-73 279.3 249 58.2
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 5.2e-73 278.5 252 56.0
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 6.8e-73 278.1 249 58.6
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 2.0e-72 276.6 251 57.0
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 2.6e-72 276.2 246 57.7
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 5.7e-72 275.0 244 59.8
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 5.7e-72 275.0 248 57.7
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 9.8e-72 274.2 273 53.8
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 9.8e-72 274.2 248 58.5
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 3.7e-71 272.3 251 55.8
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 4.1e-70 268.9 248 56.5
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 7.0e-70 268.1 250 55.6
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 2.9e-68 262.7 261 54.0
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 1.5e-67 260.4 279 49.5
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 3.3e-67 259.2 168 71.4
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 6.4e-63 245.0 186 67.2
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 9.2e-62 241.1 226 55.8
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 1.0e-60 237.7 240 54.6
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 3.6e-58 229.2 306 46.4
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 4.7e-58 228.8 170 67.6
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 1.5e-56 223.8 252 50.4
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 3.7e-55 219.2 256 49.6
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 3.2e-54 216.1 248 51.2
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 5.4e-54 215.3 209 51.7
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 1.7e-52 210.3 263 43.7
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 3.0e-52 209.5 252 45.2
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 4.3e-51 205.7 320 41.6
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 4.3e-51 205.7 280 42.9
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 2.1e-50 203.4 320 41.2
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 2.3e-49 199.9 169 58.6
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 4.0e-49 199.1 179 56.4
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 2.0e-48 196.8 248 45.6
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 2.0e-48 196.8 279 43.7
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 7.6e-48 194.9 246 46.3
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 9.9e-48 194.5 278 42.4
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 2.9e-47 193.0 250 43.2
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 5.1e-44 182.2 252 43.3
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 1.1e-41 174.5 325 37.5
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 9.3e-38 161.4 110 66.4
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 1.9e-35 153.7 151 53.6
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 1.3e-28 131.0 252 34.1
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 2.4e-25 120.2 93 61.3
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 9.9e-24 114.8 159 39.6
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 7.1e-22 108.6 246 32.1
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 3.0e-20 103.2 84 61.9
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 4.8e-18 95.9 84 51.2
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 3.2e-14 83.2 82 51.2
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 2.7e-13 80.1 50 70.0
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 3.3e-11 73.2 42 76.2
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 5.7e-11 72.4 64 50.0
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 7.4e-11 72.0 41 78.0
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 9.6e-11 71.6 154 35.1
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 1.8e-09 67.4 37 81.1
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 1.8e-09 67.4 37 81.1
FAN02G0970 Fragaria x ananassa HOM05D023359 ORTHO05D006964 2.4e-09 67.0 70 45.7
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 9.0e-09 65.1 39 76.9
RcHm_v2.0_Chr4g0406881 Rosa chinensis HOM05D005868 ORTHO05D006964 2.5e-06 57.0 35 74.3


User provided reference genes

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