Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G375.87 Capsicum annuum HOM05D003899 ORTHO05D003655 9.3e-79 297.7 287 100.0
PGSC0003DMG400027629 Solanum tuberosum HOM05D003899 ORTHO05D003655 4.8e-43 179.1 287 76.7
Sopen07g030130 Solanum pennellii HOM05D003899 ORTHO05D003655 4.0e-29 132.9 305 67.9
Nitab4.5_0001140g0230 Nicotiana tabacum HOM05D003899 ORTHO05D003655 8.3e-27 125.2 85 72.9
Dinv24330 Davidia involucrata HOM05D003899 ORTHO05D003655 2.7e-25 120.2 121 51.2
Manes.12G153900 Manihot esculenta HOM05D003899 ORTHO05D003655 4.5e-25 119.4 109 56.9
Actinidia06640 Actinidia chinensis HOM05D003899 ORTHO05D003655 1.9e-23 114.0 87 63.2
Nitab4.5_0008388g0020 Nicotiana tabacum HOM05D003899 ORTHO05D003655 1.9e-23 114.0 295 53.6
Gohir.A02G066500 Gossypium hirsutum HOM05D003899 ORTHO05D003655 3.3e-23 113.2 96 60.4
Gohir.A11G224804 Gossypium hirsutum HOM05D003899 ORTHO05D003655 1.8e-21 107.5 92 54.3
Atru.chr4.839 Acer truncatum HOM05D003899 ORTHO05D003655 3.0e-21 106.7 127 48.0
Thecc.01G128000 Theobroma cacao HOM05D003899 ORTHO05D003655 6.8e-21 105.5 92 55.4
AUR62017911 Chenopodium quinoa HOM05D003899 ORTHO05D003655 2.0e-20 104.0 80 62.5
Gorai.005G081600 Gossypium raimondii HOM05D003899 ORTHO05D003655 3.4e-20 103.2 96 58.3
EL10Ac7g17632 Beta vulgaris HOM05D003899 ORTHO05D003655 4.4e-20 102.8 92 58.7
PSO017G4320 Papaver somniferum HOM05D003899 ORTHO05D003655 4.4e-20 102.8 91 59.3
AUR62003600 Chenopodium quinoa HOM05D003899 ORTHO05D003655 5.7e-20 102.4 97 54.6
MD05G1014900 Malus domestica HOM05D003899 ORTHO05D003655 7.5e-20 102.1 97 50.5
PGSC0003DMG400001039 Solanum tuberosum HOM05D003899 ORTHO05D003655 7.5e-20 102.1 269 53.5
EL10Ac6g15278 Beta vulgaris HOM05D003899 ORTHO05D003655 9.8e-20 101.7 89 59.6
SGA_v2.0_scaffold73G24343 Striga asiatica HOM05D003899 ORTHO05D003655 9.8e-20 101.7 95 53.7
Haze_17704 Corylus avellana HOM05D003899 ORTHO05D003655 1.3e-19 101.3 91 53.8
Duzib264G1053 Durio zibethinus HOM05D003899 ORTHO05D003655 1.3e-19 101.3 91 53.8
Ciclev10003780m.g Citrus clementina HOM05D003899 ORTHO05D003655 1.7e-19 100.9 82 56.1
Potri.005G060700 Populus trichocarpa HOM05D003899 ORTHO05D003655 2.2e-19 100.5 104 52.9
FvH4_2g14670 Fragaria vesca HOM05D003899 ORTHO05D003655 2.8e-19 100.1 88 54.5
FAN24G0119 Fragaria x ananassa HOM05D003899 ORTHO05D003655 2.8e-19 100.1 88 54.5
Prupe.8G018800 Prunus persica HOM05D003899 ORTHO05D003655 4.9e-19 99.4 103 47.6
QL06p029227 Quercus lobata HOM05D003899 ORTHO05D003655 6.3e-19 99.0 76 60.5
FAN15G3500 Fragaria x ananassa HOM05D003899 ORTHO05D003655 1.8e-18 97.4 88 53.4
Aqoxy5G02188 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 5.4e-18 95.9 93 49.5
Gohir.D11G228940 Gossypium hirsutum HOM05D003899 ORTHO05D003655 5.4e-18 95.9 82 54.9
Gorai.003G068900 Gossypium raimondii HOM05D003899 ORTHO05D003655 5.4e-18 95.9 82 54.9
Potri.007G108100 Populus trichocarpa HOM05D003899 ORTHO05D003655 7.0e-18 95.5 92 55.4
Cfa018365 Carpinus fangiana HOM05D003899 ORTHO05D003655 9.2e-18 95.1 91 51.6
FAN20G0153 Fragaria x ananassa HOM05D003899 ORTHO05D003655 9.2e-18 95.1 83 55.4
Rhsim10G0136200 Rhododendron simsii HOM05D003899 ORTHO05D003655 1.2e-17 94.7 81 55.6
RhsimUnG0132700 Rhododendron simsii HOM05D003899 ORTHO05D003655 1.2e-17 94.7 81 55.6
QL02p025320 Quercus lobata HOM05D003899 ORTHO05D003655 2.0e-17 94.0 96 52.1
TWI32G0122 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 2.7e-17 93.6 88 54.5
COL.COLO4_08943 Corchorus olitorius HOM05D003899 ORTHO05D003655 4.5e-17 92.8 70 65.7
DCAR_007049 Daucus carota HOM05D003899 ORTHO05D003655 4.5e-17 92.8 87 57.5
Nn5g28623 Nelumbo nucifera HOM05D003899 ORTHO05D003655 4.5e-17 92.8 95 52.6
PSO170G2020 Papaver somniferum HOM05D003899 ORTHO05D003655 4.5e-17 92.8 95 54.7
RcHm_v2.0_Chr6g0277141 Rosa chinensis HOM05D003899 ORTHO05D003655 4.5e-17 92.8 89 52.8
Thecc.08G144600 Theobroma cacao HOM05D003899 ORTHO05D003655 4.5e-17 92.8 96 55.2
arahy.Tifrunner.gnm1.ann1.UE47UQ Arachis hypogaea HOM05D003899 ORTHO05D003655 5.9e-17 92.4 85 55.3
ClCG08G006450 Citrullus lanatus HOM05D000058 ORTHO05D000077 5.9e-17 92.4 83 49.4
AUR62043709 Chenopodium quinoa HOM05D003899 ORTHO05D003655 2.3e-16 90.5 69 62.3
Duzib041G0166 Durio zibethinus HOM05D003899 ORTHO05D003655 2.9e-16 90.1 95 50.5
PGR044G0858 Punica granatum HOM05D003899 ORTHO05D003655 2.9e-16 90.1 74 56.8
Sed0026893 Sechium edule HOM05D003899 ORTHO05D003655 1.5e-15 87.8 79 48.1
Thhalv10012331m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 1.9e-15 87.4 104 41.3
Lalb_Chr25g0281721 Lupinus albus HOM05D003899 ORTHO05D003655 4.3e-15 86.3 84 50.0
CsaV3_6G030980 Cucumis sativus L. HOM05D003899 ORTHO05D003655 5.6e-15 85.9 80 47.5
MSTRG.1375 Avicennia marina HOM05D003899 ORTHO05D003655 9.5e-15 85.1 89 46.1
MELO3C027328.2 Cucumis melo HOM05D003899 ORTHO05D003655 9.5e-15 85.1 85 47.1
CANSAT25G0207 Cannabis sativa HOM05D003899 ORTHO05D003655 1.2e-14 84.7 91 45.1
CiPaw.16G017800 Carya illinoinensis HOM05D003899 ORTHO05D003655 1.6e-14 84.3 92 45.7
Lj1g0026176 Lotus japonicus HOM05D003899 ORTHO05D003655 1.6e-14 84.3 92 46.7
BcaB07g33974 Brassica carinata HOM05D003899 ORTHO05D003655 6.1e-14 82.4 100 41.0
A10p07750 Brassica napus HOM05D003899 ORTHO05D003655 6.1e-14 82.4 98 41.8
BolC6t35162H Brassica oleracea HOM05D003899 ORTHO05D003655 6.1e-14 82.4 91 44.0
BraSC36t46027Z Brassica rapa HOM05D003899 ORTHO05D003655 6.1e-14 82.4 98 41.8
Glyma.14G121800 Glycine max HOM05D003899 ORTHO05D003655 1.0e-13 81.6 93 48.4
Migut.N03236 Erythranthe guttata HOM05D003899 ORTHO05D003655 3.1e-13 80.1 81 49.4
Gohir.D02G072400 Gossypium hirsutum HOM05D003899 ORTHO05D003655 4.0e-13 79.7 97 50.5
COL.COLO4_14024 Corchorus olitorius HOM05D003899 ORTHO05D003655 5.2e-13 79.3 66 53.0
Psat6g039960 Pisum sativum HOM05D003899 ORTHO05D003655 6.8e-13 79.0 84 48.8
CARHR035480 Cardamine hirsuta HOM05D003899 ORTHO05D003655 1.2e-12 78.2 100 40.0
Medtr1g029140 Medicago truncatula HOM05D003899 ORTHO05D003655 1.2e-12 78.2 86 43.0
PSO126G0001 Papaver somniferum HOM05D003899 ORTHO05D003655 1.5e-12 77.8 71 57.7
Thhalv10012251m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 2.0e-12 77.4 98 42.9
Oeu030532.1 Olea europaea HOM05D003899 ORTHO05D003655 2.0e-12 77.4 82 45.1
MELO3C023688.2 Cucumis melo HOM05D003899 ORTHO05D003655 2.6e-12 77.0 86 44.2
HanXRQChr04g0125201 Helianthus annuus HOM05D003899 ORTHO05D003655 2.6e-12 77.0 75 53.3
C06p00330 Brassica napus HOM05D003899 ORTHO05D003655 3.4e-12 76.6 90 42.2
AT1G43790 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 4.4e-12 76.3 91 38.5
PGR044G1758 Punica granatum HOM05D003899 ORTHO05D003655 7.5e-12 75.5 73 49.3
AL1G51910 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 9.8e-12 75.1 91 38.5
MBI06_g43012_MAGBIO Magnolia biondii HOM05D003899 ORTHO05D003655 9.8e-12 75.1 93 41.9
Sed0020885 Sechium edule HOM05D003899 ORTHO05D003655 1.3e-11 74.7 83 47.0
HanXRQChr08g0232541 Helianthus annuus HOM05D003899 ORTHO05D003655 1.7e-11 74.3 87 49.4
Lsat_1_v5_gn_5_108780 Lactuca sativa HOM05D003899 ORTHO05D003655 2.9e-11 73.6 85 47.1
AT5G48920 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 3.7e-11 73.2 78 47.4
Lsat_1_v5_gn_5_108760 Lactuca sativa HOM05D003899 ORTHO05D003655 3.7e-11 73.2 94 44.7
Ca_12820_v3 Cicer arietinum L. HOM05D003899 ORTHO05D003655 4.9e-11 72.8 76 46.1
THA.LOC104806849 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 4.9e-11 72.8 111 36.9
ECA246G5022 Erigeron canadensis HOM05D003899 ORTHO05D003655 6.4e-11 72.4 85 47.1
Aqoxy3G00817 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 8.3e-11 72.0 94 45.7
BcaB03g16849 Brassica carinata HOM05D003899 ORTHO05D003655 8.3e-11 72.0 76 46.1
CARHR046070 Cardamine hirsuta HOM05D003899 ORTHO05D003655 8.3e-11 72.0 64 54.7
Cfa013717 Carpinus fangiana HOM05D009119 ORTHO05D003655 1.4e-10 71.2 86 45.3
Sp1g32910 Schrenkiella parvula HOM05D003899 ORTHO05D003655 1.4e-10 71.2 88 39.8
ECA246G3613 Erigeron canadensis HOM05D003899 ORTHO05D003655 3.2e-10 70.1 94 42.6
Medtr1g008620 Medicago truncatula HOM05D003899 ORTHO05D003655 3.2e-10 70.1 84 42.9
HanXRQChr05g0161081 Helianthus annuus HOM05D003899 ORTHO05D003655 4.1e-10 69.7 87 42.5
Lsat_1_v5_gn_9_107661 Lactuca sativa HOM05D003899 ORTHO05D003655 4.1e-10 69.7 86 45.3
Carub.0001s3477 Capsella rubella HOM05D003899 ORTHO05D003655 5.4e-10 69.3 91 38.5
Psat6g033720 Pisum sativum HOM05D003899 ORTHO05D003655 5.4e-10 69.3 84 42.9
MD10G1014900 Malus domestica HOM05D003899 ORTHO05D003655 9.2e-10 68.6 91 38.5
TPR.G12083 Trifolium pratense HOM05D003899 ORTHO05D003655 9.2e-10 68.6 74 40.5
BcaC08g42822 Brassica carinata HOM05D003899 ORTHO05D003655 1.2e-09 68.2 74 45.9
Haze_22364 Corylus avellana HOM05D009119 ORTHO05D003655 1.2e-09 68.2 86 44.2
Nn1g06203 Nelumbo nucifera HOM05D003899 ORTHO05D003655 1.2e-09 68.2 91 45.1
COL.COLO4_11973 Corchorus olitorius HOM05D009119 ORTHO05D003655 1.6e-09 67.8 84 44.0
Medtr1g008675 Medicago truncatula HOM05D003899 ORTHO05D003655 4.6e-09 66.2 65 44.6
Thecc.08G065300 Theobroma cacao HOM05D009119 ORTHO05D003655 4.6e-09 66.2 76 50.0
AL1G64600 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 7.8e-09 65.5 64 50.0
CANSAT11G1227 Cannabis sativa HOM05D003899 ORTHO05D003655 7.8e-09 65.5 63 52.4
Lalb_Chr23g0271351 Lupinus albus HOM05D003899 ORTHO05D003655 7.8e-09 65.5 108 37.0
Carub.0001s4477 Capsella rubella HOM05D003899 ORTHO05D003655 1.0e-08 65.1 64 50.0
Sabra07G0088500 Salix brachista HOM05D000850 ORTHO05D000266 1.7e-08 64.3 121 33.9
THA.LOC104827412 Tarenaya hassleriana HOM05D009119 ORTHO05D003655 2.3e-08 63.9 95 45.3
Dinv03732 Davidia involucrata HOM05D000043 ORTHO05D002577 3.0e-08 63.5 53 62.3
Dinv25809 Davidia involucrata HOM05D003899 ORTHO05D003655 3.0e-08 63.5 49 59.2
Cpa.g.sc42.130 Carica papaya HOM05D003899 ORTHO05D003655 3.9e-08 63.2 51 54.9
QL09p016294 Quercus lobata HOM05D009119 ORTHO05D003655 3.9e-08 63.2 69 49.3
Duzib093G1486 Durio zibethinus HOM05D009119 ORTHO05D003655 5.0e-08 62.8 108 38.0
Lj2C604T4 Lonicera japonica HOM05D003899 ORTHO05D003655 5.0e-08 62.8 64 46.9
Lj2C604T3 Lonicera japonica HOM05D003899 ORTHO05D003655 6.6e-08 62.4 68 44.1
Nn5g28622 Nelumbo nucifera HOM05D003899 ORTHO05D003655 6.6e-08 62.4 52 51.9
TAR381G0487 Trochodendron aralioides HOM05D003899 ORTHO05D003655 1.1e-07 61.6 51 56.9
Duzib093G0910 Durio zibethinus HOM05D003899 ORTHO05D003655 1.9e-07 60.8 55 54.5
Nn1g06205 Nelumbo nucifera HOM05D003899 ORTHO05D003655 3.3e-07 60.1 52 53.8
QL09p016276 Quercus lobata HOM05D009119 ORTHO05D003655 3.3e-07 60.1 69 47.8
Phvul.001G052300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 4.3e-07 59.7 48 54.2
QL02p025328 Quercus lobata HOM05D003899 ORTHO05D003655 4.3e-07 59.7 68 47.1
Sp1g41920 Schrenkiella parvula HOM05D003899 ORTHO05D003655 4.3e-07 59.7 67 44.8
SGA_v2.0_scaffold25G11158 Striga asiatica HOM05D003899 ORTHO05D003655 5.6e-07 59.3 87 41.4
TPR.G33315 Trifolium pratense HOM05D003899 ORTHO05D003655 5.6e-07 59.3 59 50.8
CAN.G1012.7 Capsicum annuum HOM05D003899 ORTHO05D003655 7.3e-07 58.9 85 37.6
Dinv41123 Davidia involucrata HOM05D000043 ORTHO05D002577 7.3e-07 58.9 53 50.9
Psat6g033800 Pisum sativum HOM05D003899 ORTHO05D003655 7.3e-07 58.9 76 40.8
Sc02g0004420 Simmondsia chinensis HOM05D003899 ORTHO05D003655 7.3e-07 58.9 73 42.5
TWI60G1060 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 7.3e-07 58.9 50 56.0
CAN.G833.2 Capsicum annuum HOM05D003899 ORTHO05D003655 9.5e-07 58.5 64 43.8
ClCG09G009790 Citrullus lanatus HOM05D003899 ORTHO05D003655 9.5e-07 58.5 86 39.5
CSS0023777 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 1.6e-06 57.8 56 58.9
CsaV3_7G024950 Cucumis sativus L. HOM05D000219 ORTHO05D000226 1.6e-06 57.8 98 37.8
CDE08G0254 Ceratophyllum demersum HOM05D000058 ORTHO05D000077 2.8e-06 57.0 83 34.9
Migut.M00600 Erythranthe guttata HOM05D003899 ORTHO05D003655 2.8e-06 57.0 52 55.8
TWI79G1413 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 2.8e-06 57.0 54 51.9
Os08g0108300 Oryza sativa ssp. japonica HOM05D053309 ORTHO05D003655 6.2e-06 55.8 73 42.5
SalBow6G1670 Salvia bowleyana HOM05D003899 ORTHO05D003655 6.2e-06 55.8 98 37.8
CiPaw.15G021500 Carya illinoinensis HOM05D003899 ORTHO05D003655 8.0e-06 55.5 53 52.8
DCAR_001362 Daucus carota HOM05D003899 ORTHO05D003655 8.0e-06 55.5 65 41.5
PGR002G0009 Punica granatum HOM05D003899 ORTHO05D003655 8.0e-06 55.5 46 52.2


User provided reference genes

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