Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 2.1e-180 635.6 315 100.0
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 3.9e-163 578.2 315 90.5
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 3.0e-155 552.0 315 86.7
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 1.5e-154 549.7 315 87.3
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 1.6e-153 546.2 315 86.0
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 7.9e-148 527.3 305 86.6
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 2.6e-143 512.3 286 88.8
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 8.2e-137 490.7 316 77.5
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 1.2e-132 476.9 315 74.3
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 1.4e-131 473.4 319 75.2
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 3.0e-131 472.2 316 74.7
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 1.1e-128 463.8 316 74.1
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 5.9e-127 458.0 316 72.8
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 1.0e-126 457.2 319 70.8
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 6.5e-126 454.5 316 72.2
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 5.5e-125 451.4 335 68.4
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 1.2e-124 450.3 316 69.9
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 4.7e-124 448.4 314 69.4
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 4.7e-124 448.4 315 69.5
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 2.3e-123 446.0 315 69.8
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 3.0e-123 445.7 319 69.9
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 4.0e-123 445.3 310 70.3
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 2.2e-121 439.5 316 68.4
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 2.2e-121 439.5 312 67.6
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 4.8e-121 438.3 310 70.0
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 1.8e-120 436.4 317 68.5
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 2.4e-120 436.0 312 68.6
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 4.1e-120 435.3 316 67.7
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 1.2e-119 433.7 312 67.0
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 2.0e-119 433.0 310 67.7
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 3.5e-119 432.2 310 67.7
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 3.5e-119 432.2 310 68.4
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 3.5e-119 432.2 315 67.6
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 7.7e-119 431.0 315 67.9
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 7.7e-119 431.0 314 66.2
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 1.0e-118 430.6 315 66.3
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 1.0e-118 430.6 310 68.7
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 1.7e-118 429.9 316 67.4
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 1.7e-118 429.9 314 66.6
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 1.7e-118 429.9 363 62.0
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 1.9e-117 426.4 281 74.4
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 5.5e-117 424.9 315 66.7
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 2.8e-116 422.5 314 65.3
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 3.6e-116 422.2 307 71.0
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 8.0e-116 421.0 314 66.9
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 8.0e-116 421.0 314 66.2
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.2e-114 417.2 309 66.3
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 1.2e-114 417.2 313 64.9
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 2.6e-114 416.0 283 70.3
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 4.4e-114 415.2 280 71.1
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 1.3e-113 413.7 315 66.3
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 1.7e-113 413.3 314 64.0
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 6.3e-113 411.4 325 63.1
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 8.3e-113 411.0 313 63.9
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 3.1e-112 409.1 309 65.0
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 5.4e-112 408.3 313 63.9
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 5.9e-111 404.8 317 64.0
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 5.9e-111 404.8 314 65.3
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 7.8e-111 404.4 324 62.7
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 2.3e-110 402.9 308 63.0
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 1.5e-109 400.2 310 63.5
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 2.5e-109 399.4 314 64.0
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 3.3e-109 399.1 312 62.5
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 3.3e-109 399.1 282 67.0
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 5.6e-109 398.3 312 62.5
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 9.5e-109 397.5 313 62.6
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 9.5e-109 397.5 313 62.6
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 2.1e-108 396.4 314 62.1
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 2.1e-108 396.4 315 64.1
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 5.7e-106 388.3 283 66.4
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 3.7e-105 385.6 275 66.9
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 4.9e-105 385.2 311 62.1
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 6.4e-105 384.8 315 61.0
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 6.4e-105 384.8 312 62.5
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 4.1e-104 382.1 314 60.8
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 7.0e-104 381.3 309 61.8
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 1.6e-103 380.2 314 61.5
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 2.7e-103 379.4 313 62.0
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 3.0e-102 375.9 324 57.7
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 3.9e-102 375.6 280 66.1
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 1.1e-101 374.0 276 63.8
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 1.1e-101 374.0 317 59.6
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 3.3e-101 372.5 327 57.8
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 7.3e-101 371.3 295 61.0
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 1.6e-100 370.2 334 56.9
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 1.8e-99 366.7 278 66.9
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 2.9e-97 359.4 316 57.3
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 4.9e-97 358.6 309 59.9
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 4.9e-97 358.6 243 74.1
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 5.4e-96 355.1 309 58.3
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 9.2e-96 354.4 309 58.6
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 2.7e-95 352.8 279 62.7
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 3.5e-95 352.4 233 76.4
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 6.0e-95 351.7 309 58.6
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 6.0e-95 351.7 309 57.9
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 1.0e-94 350.9 309 57.9
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 1.0e-94 350.9 309 57.9
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 1.0e-94 350.9 309 58.3
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 3.9e-94 349.0 310 57.4
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 8.6e-94 347.8 309 57.3
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 8.6e-94 347.8 309 57.3
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 1.9e-93 346.7 309 58.3
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 9.5e-93 344.4 309 57.3
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 1.6e-92 343.6 243 69.1
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 2.1e-92 343.2 309 57.0
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 3.6e-92 342.4 309 57.0
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 6.2e-92 341.7 309 56.6
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 1.4e-91 340.5 313 56.5
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 4.0e-91 339.0 309 56.6
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 8.9e-91 337.8 316 56.6
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 2.7e-87 326.2 282 58.2
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 6.6e-86 321.6 269 59.5
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 1.1e-85 320.9 283 56.9
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 1.9e-85 320.1 265 60.0
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 5.6e-85 318.5 249 61.4
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 6.4e-81 305.1 221 65.2
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 1.0e-78 297.7 243 63.4
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 3.6e-76 289.3 318 50.3
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 2.0e-74 283.5 328 47.0
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 9.9e-74 281.2 276 50.7
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 9.3e-72 274.6 324 45.4
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 6.4e-65 251.9 199 60.3
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.2e-50 204.5 191 53.4
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 2.6e-50 203.4 173 58.4
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 1.0e-49 201.4 192 57.8
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 7.4e-45 185.3 140 65.7
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 6.1e-39 165.6 109 69.7
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 6.7e-38 162.2 263 39.9
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 2.0e-34 150.6 112 67.0
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 3.2e-24 116.7 118 54.2
CDE03G0511 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 5.3e-11 72.8 66 60.6
PRCOL_00004450 Prasinoderma coloniale HOM05D006003 ORTHO05D007388 9.1e-11 72.0 270 27.4


User provided reference genes

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