Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G375.34 Capsicum annuum HOM05D005594 ORTHO05D006403 3.1e-93 345.1 175 100.0
CAN.G193.4 Capsicum annuum HOM05D005594 ORTHO05D006403 1.1e-66 256.9 175 80.0
PGSC0003DMG400009352 Solanum tuberosum HOM05D005594 ORTHO05D006403 7.2e-58 227.6 177 72.9
PGSC0003DMG400008701 Solanum tuberosum HOM05D005594 ORTHO05D006403 2.7e-57 225.7 177 72.3
Solyc04g076560.3 Solanum lycopersicum HOM05D005594 ORTHO05D006403 1.3e-54 216.9 177 71.2
Sopen04g030280 Solanum pennellii HOM05D005594 ORTHO05D006403 1.3e-54 216.9 177 71.2
Nitab4.5_0009755g0010 Nicotiana tabacum HOM05D005594 ORTHO05D006403 3.2e-50 202.2 176 64.2
Nitab4.5_0000131g0040 Nicotiana tabacum HOM05D005594 ORTHO05D006403 7.2e-50 201.1 176 64.2
Peaxi162Scf01112g00131 Petunia axillaris HOM05D005594 ORTHO05D006403 1.2e-49 200.3 177 65.5
CSS0029582 Camellia sinensis var. sinensis HOM05D005594 ORTHO05D006403 1.7e-43 179.9 178 61.2
Oeu040880.1 Olea europaea HOM05D005594 ORTHO05D006403 1.7e-43 179.9 177 57.1
SalBow3G3026 Salvia bowleyana HOM05D005594 ORTHO05D006403 1.7e-43 179.9 176 59.1
CSS0014517 Camellia sinensis var. sinensis HOM05D005594 ORTHO05D006403 8.6e-43 177.6 178 60.7
Ciclev10001834m.g Citrus clementina HOM05D005594 ORTHO05D006403 1.9e-42 176.4 179 59.8
GSVIVG01026918001 Vitis vinifera HOM05D005594 ORTHO05D006403 1.9e-42 176.4 178 60.1
Eucgr.F02158 Eucalyptus grandis HOM05D005594 ORTHO05D006403 2.5e-42 176.0 181 56.4
Actinidia19620 Actinidia chinensis HOM05D005594 ORTHO05D006403 9.5e-42 174.1 176 60.8
GSVIVG01009200001 Vitis vinifera HOM05D005594 ORTHO05D006403 1.2e-41 173.7 180 58.3
Rhsim05G0205900 Rhododendron simsii HOM05D005594 ORTHO05D006403 3.6e-41 172.2 177 58.8
vmacro21357 Vaccinium macrocarpon HOM05D005594 ORTHO05D006403 6.1e-41 171.4 176 60.8
TAR381G1609 Trochodendron aralioides HOM05D005594 ORTHO05D006403 1.0e-40 170.6 179 58.1
Thecc.08G073300 Theobroma cacao HOM05D005594 ORTHO05D006403 1.4e-40 170.2 178 55.6
Cpa.g.sc1556.4 Carica papaya HOM05D005594 ORTHO05D006403 1.8e-40 169.9 176 58.5
PGR042G0833 Punica granatum HOM05D005594 ORTHO05D006403 1.8e-40 169.9 178 55.1
MSTRG.24680 Avicennia marina HOM05D005594 ORTHO05D006403 5.2e-40 168.3 177 56.5
MBI16_g06011_MAGBIO Magnolia biondii HOM05D005594 ORTHO05D006403 5.2e-40 168.3 175 58.3
Rhsim06G0070100 Rhododendron simsii HOM05D005594 ORTHO05D006403 5.2e-40 168.3 177 58.2
Nn1g05624 Nelumbo nucifera HOM05D005594 ORTHO05D006403 6.8e-40 167.9 179 57.0
Atru.chr13.987 Acer truncatum HOM05D005594 ORTHO05D006403 2.6e-39 166.0 176 55.7
Prupe.1G535400 Prunus persica HOM05D005594 ORTHO05D006403 2.6e-39 166.0 179 52.5
MELO3C003509.2 Cucumis melo HOM05D005594 ORTHO05D006403 3.4e-39 165.6 188 52.1
MD08G1202000 Malus domestica HOM05D005594 ORTHO05D006403 3.4e-39 165.6 179 53.6
ClCG02G008140 Citrullus lanatus HOM05D005594 ORTHO05D006403 4.4e-39 165.2 177 52.0
Cc10_g08520 Coffea canephora HOM05D005594 ORTHO05D006403 4.4e-39 165.2 180 57.8
Duzib093G1195 Durio zibethinus HOM05D005594 ORTHO05D006403 7.5e-39 164.5 181 55.8
CsaV3_3G048080 Cucumis sativus L. HOM05D005594 ORTHO05D006403 1.3e-38 163.7 177 53.1
Lj8A496G24 Lonicera japonica HOM05D005594 ORTHO05D006403 1.7e-38 163.3 177 56.5
Sed0005434 Sechium edule HOM05D005594 ORTHO05D006403 3.7e-38 162.2 177 50.8
Lj8A490G28 Lonicera japonica HOM05D005594 ORTHO05D006403 4.9e-38 161.8 177 55.9
CiPaw.07G163500 Carya illinoinensis HOM05D005594 ORTHO05D006403 6.4e-38 161.4 176 54.5
Haze_22483 Corylus avellana HOM05D005594 ORTHO05D006403 6.4e-38 161.4 188 52.7
Gohir.A05G218700 Gossypium hirsutum HOM05D005594 ORTHO05D006403 6.4e-38 161.4 179 53.1
EL10Ac1g00491 Beta vulgaris HOM05D005594 ORTHO05D006403 1.1e-37 160.6 181 51.9
DCAR_028088 Daucus carota HOM05D005594 ORTHO05D006403 1.4e-37 160.2 177 54.8
Manes.18G056600 Manihot esculenta HOM05D005594 ORTHO05D006403 1.4e-37 160.2 175 55.4
THA.LOC104800630 Tarenaya hassleriana HOM05D005594 ORTHO05D006403 1.8e-37 159.8 176 56.2
SGA_v2.0_scaffold62G21352 Striga asiatica HOM05D000582 ORTHO05D006403 2.4e-37 159.5 175 52.6
TAR625G0360 Trochodendron aralioides HOM05D005594 ORTHO05D006403 2.4e-37 159.5 178 54.5
Gorai.009G228600 Gossypium raimondii HOM05D005594 ORTHO05D006403 5.4e-37 158.3 183 52.5
Ah.07g203840 Amaranthus hybridus HOM05D005594 ORTHO05D006403 7.0e-37 157.9 181 50.8
Medtr3g099850 Medicago truncatula HOM05D005594 ORTHO05D006403 7.0e-37 157.9 182 52.2
Sc15g0003090 Simmondsia chinensis HOM05D005594 ORTHO05D006403 1.2e-36 157.1 175 53.7
SGA_v2.0_scaffold13G06499 Striga asiatica HOM05D005594 ORTHO05D006403 1.2e-36 157.1 178 54.5
CANSAT35G1072 Cannabis sativa HOM05D005594 ORTHO05D006403 1.6e-36 156.8 176 52.8
Aqoxy5G01356 Aquilegia oxysepala HOM05D005594 ORTHO05D006403 2.0e-36 156.4 181 51.4
Gohir.D05G221400 Gossypium hirsutum HOM05D005594 ORTHO05D006403 2.0e-36 156.4 182 52.2
PSO541G2296 Papaver somniferum HOM05D005594 ORTHO05D006403 2.7e-36 156.0 174 52.9
CiPaw.01G111900 Carya illinoinensis HOM05D005594 ORTHO05D006403 3.5e-36 155.6 177 55.4
ECA248G0412 Erigeron canadensis HOM05D005594 ORTHO05D006403 4.6e-36 155.2 173 50.9
PSO675G6381 Papaver somniferum HOM05D005594 ORTHO05D006403 5.9e-36 154.8 174 52.9
QL09p018366 Quercus lobata HOM05D005594 ORTHO05D006403 5.9e-36 154.8 178 51.1
AUR62014367 Chenopodium quinoa HOM05D005594 ORTHO05D006403 2.9e-35 152.5 182 51.6
VMungo1309G0327 Vigna mungo HOM05D005594 ORTHO05D006403 2.9e-35 152.5 176 53.4
QL12p040902 Quercus lobata HOM05D005594 ORTHO05D006403 3.9e-35 152.1 178 50.6
AUR62019109 Chenopodium quinoa HOM05D005594 ORTHO05D006403 5.0e-35 151.8 179 55.3
HanXRQChr09g0253981 Helianthus annuus HOM05D005594 ORTHO05D006403 5.0e-35 151.8 173 49.1
unitig_26.g9553 Utricularia gibba HOM05D005594 ORTHO05D006403 5.0e-35 151.8 179 53.6
Aqoxy4G03010 Aquilegia oxysepala HOM05D005594 ORTHO05D006403 6.6e-35 151.4 181 49.2
arahy.Tifrunner.gnm1.ann1.7TC8PB Arachis hypogaea HOM05D005594 ORTHO05D006403 6.6e-35 151.4 180 51.7
COL.COLO4_35271 Corchorus olitorius HOM05D005594 ORTHO05D006403 6.6e-35 151.4 178 52.2
arahy.Tifrunner.gnm1.ann1.X1J0TB Arachis hypogaea HOM05D005594 ORTHO05D006403 8.6e-35 151.0 180 51.7
ATR0767G044 Amborella trichopoda HOM05D005594 ORTHO05D006403 1.1e-34 150.6 181 50.3
CDE02G1340 Ceratophyllum demersum HOM05D005594 ORTHO05D006403 1.1e-34 150.6 179 49.7
Migut.N00274 Erythranthe guttata HOM05D005594 ORTHO05D006403 1.5e-34 150.2 178 51.7
Ca_26381_v3 Cicer arietinum L. HOM05D005594 ORTHO05D006403 1.9e-34 149.8 179 52.0
Dinv42597 Davidia involucrata HOM05D005594 ORTHO05D006403 4.3e-34 148.7 168 54.8
MD08G1202600 Malus domestica HOM05D005594 ORTHO05D006403 4.3e-34 148.7 181 50.3
Phvul.009G035100 Phaseolus vulgaris HOM05D005594 ORTHO05D006403 4.3e-34 148.7 179 52.0
Ca_11286_v3 Cicer arietinum L. HOM05D005594 ORTHO05D006403 5.6e-34 148.3 179 50.3
Psat5g049560 Pisum sativum HOM05D005594 ORTHO05D006403 5.6e-34 148.3 181 49.7
Potri.005G152200 Populus trichocarpa HOM05D005594 ORTHO05D006403 5.6e-34 148.3 174 54.6
Glyma.06G098500 Glycine max HOM05D005594 ORTHO05D006403 7.3e-34 147.9 179 50.8
Hund26823 Selenicereus undatus HOM05D005594 ORTHO05D006403 7.3e-34 147.9 181 49.2
Lsat_1_v5_gn_3_110060 Lactuca sativa HOM05D005594 ORTHO05D006403 9.5e-34 147.5 179 50.3
TWI31G0793 Tripterygium wilfordii HOM05D005594 ORTHO05D006403 9.5e-34 147.5 179 51.4
Sabra05G0119000 Salix brachista HOM05D005594 ORTHO05D006403 1.2e-33 147.1 175 56.0
TPR.G6332 Trifolium pratense HOM05D005594 ORTHO05D006403 2.1e-33 146.4 181 48.1
Glyma.04G096700 Glycine max HOM05D005594 ORTHO05D006403 3.6e-33 145.6 180 50.6
Lj1g0021697 Lotus japonicus HOM05D005594 ORTHO05D006403 8.0e-33 144.4 181 48.1
Aa31LG1G6880 Aethionema arabicum HOM05D005594 ORTHO05D006403 3.1e-32 142.5 182 51.6
CARHR007650 Cardamine hirsuta HOM05D005594 ORTHO05D006403 4.0e-32 142.1 175 50.9
SEGI_07360 Sequoiadendron giganteum HOM05D005594 ORTHO05D006403 5.2e-32 141.7 178 46.6
PSO170G0052 Papaver somniferum HOM05D005594 ORTHO05D006403 6.8e-32 141.4 174 48.9
AL1G18120 Arabidopsis lyrata HOM05D005594 ORTHO05D006403 1.2e-31 140.6 176 51.7
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 1.2e-31 140.6 173 50.3
AT1G07840 Arabidopsis thaliana HOM05D005594 ORTHO05D006403 1.5e-31 140.2 178 48.9
BolC5t29354H Brassica oleracea HOM05D000310 ORTHO05D000509 1.5e-31 140.2 173 50.3
Lalb_Chr23g0269971 Lupinus albus HOM05D005594 ORTHO05D006403 2.0e-31 139.8 176 50.6
Sp1g06520 Schrenkiella parvula HOM05D005594 ORTHO05D006403 2.0e-31 139.8 176 49.4
A06p04960 Brassica napus HOM05D005594 ORTHO05D006403 5.8e-31 138.3 173 49.7
BraA06t23703Z Brassica rapa HOM05D005594 ORTHO05D006403 5.8e-31 138.3 173 49.7
RcHm_v2.0_Chr7g0234971 Rosa chinensis HOM05D005594 ORTHO05D006403 8.3e-30 134.4 176 47.7
CiPaw.01G112000 Carya illinoinensis HOM05D005594 ORTHO05D006403 1.9e-29 133.3 172 50.0
Zm00001eb388820 Zea mays HOM05D005594 ORTHO05D006403 4.1e-29 132.1 178 47.2
Carub.0001s0718 Capsella rubella HOM05D005594 ORTHO05D006403 2.7e-28 129.4 175 48.0
FAN08G3514 Fragaria x ananassa HOM05D005594 ORTHO05D006403 2.7e-28 129.4 176 44.9
FAN18G0194 Fragaria x ananassa HOM05D005594 ORTHO05D006403 2.7e-28 129.4 176 44.9
Os01g0911000 Oryza sativa ssp. japonica HOM05D005594 ORTHO05D006403 3.5e-28 129.0 179 48.6
FvH4_5g34380 Fragaria vesca HOM05D005594 ORTHO05D006403 1.3e-27 127.1 176 44.3
Thhalv10008245m.g Eutrema salsugineum HOM05D005594 ORTHO05D006403 1.7e-27 126.7 175 47.4
Pp3c26_12080 Physcomitrium patens HOM05D005594 ORTHO05D006403 2.8e-25 119.4 176 39.8
HPP92_001778 Vanilla planifolia HOM05D005594 ORTHO05D006403 2.3e-24 116.3 157 43.9
AagrBONN_evm.TU.Sc2ySwM_117.2374 Anthoceros agrestis HOM05D005594 ORTHO05D006403 2.6e-23 112.8 171 41.5
Mapoly0041s0093 Marchantia polymorpha HOM05D005056 ORTHO05D006403 3.4e-23 112.5 183 35.5
SMO140G0091 Selaginella moellendorffii HOM05D005594 ORTHO05D006403 7.5e-23 111.3 178 40.4
CBR_g34512 Chara braunii HOM05D005056 ORTHO05D006403 2.4e-21 106.3 183 40.4
Zm00001eb365030 Zea mays HOM05D005594 ORTHO05D006403 1.6e-20 103.6 183 37.7
FAN04G0064 Fragaria x ananassa HOM05D005594 ORTHO05D006403 3.0e-19 99.4 159 42.8
Lj4A740T30 Lonicera japonica HOM05D005594 ORTHO05D006403 6.2e-17 91.7 165 41.8
Sed0022235 Sechium edule HOM05D005594 ORTHO05D006403 8.1e-17 91.3 91 53.8
AagrBONN_evm.TU.Sc2ySwM_228.4407 Anthoceros agrestis HOM05D005056 ORTHO05D006403 1.4e-16 90.5 176 38.6
ClCG11G014680 Citrullus lanatus HOM05D005594 ORTHO05D006403 5.8e-15 85.1 92 48.9
HanXRQChr13g0407601 Helianthus annuus HOM05D005594 ORTHO05D006403 1.7e-14 83.6 106 44.3
MD15G1388800 Malus domestica HOM05D005594 ORTHO05D006403 2.2e-14 83.2 158 39.9
MCO16G233 Micromonas commoda HOM05D005594 ORTHO05D006403 2.9e-14 82.8 154 37.7
Lj4g0023762 Lotus japonicus HOM05D005594 ORTHO05D006403 6.0e-12 75.1 68 52.9
Nitab4.5_0005345g0060 Nicotiana tabacum HOM05D005594 ORTHO05D006403 1.0e-11 74.3 127 42.5
HPP92_001777 Vanilla planifolia HOM05D005594 ORTHO05D006403 2.3e-11 73.2 102 43.1
SMO358G0450 Selaginella moellendorffii HOM05D005056 ORTHO05D006487 5.2e-08 62.0 46 63.0
Cre09.g394399 Chlamydomonas reinhardtii HOM05D005056 ORTHO05D006403 2.0e-07 60.1 201 29.9
Pp3c13_22260 Physcomitrium patens HOM05D005056 ORTHO05D006487 3.8e-06 55.8 44 56.8
HanXRQChr15g0472131 Helianthus annuus HOM05D005594 ORTHO05D006403 8.4e-06 54.7 50 56.0


User provided reference genes

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