Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G371.92 Capsicum annuum HOM05D005468 ORTHO05D006789 1.8e-90 335.9 170 100.0
Nitab4.5_0000790g0020 Nicotiana tabacum HOM05D005468 ORTHO05D006789 2.8e-22 109.4 153 47.1
Atru.BG.240.p Acer truncatum HOM05D005468 ORTHO05D006789 4.9e-19 98.6 152 42.1
Atru.chr13.591 Acer truncatum HOM05D005468 ORTHO05D006789 4.9e-19 98.6 152 42.1
MSTRG.22278 Avicennia marina HOM05D005468 ORTHO05D006789 4.9e-19 98.6 152 42.1
CSS0002701 Camellia sinensis var. sinensis HOM05D005468 ORTHO05D006789 4.9e-19 98.6 152 42.1
Cc10_g03660 Coffea canephora HOM05D005468 ORTHO05D006789 4.9e-19 98.6 152 42.1
COL.COLO4_26415 Corchorus olitorius HOM05D005468 ORTHO05D006789 4.9e-19 98.6 152 42.1
Duzib093G1518 Durio zibethinus HOM05D005468 ORTHO05D006789 4.9e-19 98.6 152 42.1
Duzib116G0868 Durio zibethinus HOM05D005468 ORTHO05D006789 4.9e-19 98.6 152 42.1
FvH4_2g40630 Fragaria vesca HOM05D005468 ORTHO05D006789 4.9e-19 98.6 152 42.1
FAN20G0953 Fragaria x ananassa HOM05D005468 ORTHO05D006789 4.9e-19 98.6 152 42.1
FAN27G0003 Fragaria x ananassa HOM05D005468 ORTHO05D006789 4.9e-19 98.6 152 42.1
Gohir.A05G198900 Gossypium hirsutum HOM05D005468 ORTHO05D006789 4.9e-19 98.6 152 42.1
Gohir.D05G201600 Gossypium hirsutum HOM05D005468 ORTHO05D006789 4.9e-19 98.6 152 42.1
Gorai.009G207300 Gossypium raimondii HOM05D005468 ORTHO05D006789 4.9e-19 98.6 152 42.1
Hma1.2p1_0260F.1_g104510 Hydrangea macrophylla HOM05D005468 ORTHO05D006789 4.9e-19 98.6 152 42.1
MBI16_g31482_MAGBIO Magnolia biondii HOM05D005468 ORTHO05D006789 4.9e-19 98.6 152 41.4
Rhsim06G0040800 Rhododendron simsii HOM05D005468 ORTHO05D006789 4.9e-19 98.6 152 42.1
RcHm_v2.0_Chr6g0300041 Rosa chinensis HOM05D005468 ORTHO05D006789 4.9e-19 98.6 152 42.1
SalBow8G4730 Salvia bowleyana HOM05D005468 ORTHO05D006789 4.9e-19 98.6 152 42.1
Hund26608 Selenicereus undatus HOM05D005468 ORTHO05D006789 4.9e-19 98.6 152 42.1
vmacro21583 Vaccinium macrocarpon HOM05D005468 ORTHO05D006789 4.9e-19 98.6 152 42.1
GSVIVG01009588001 Vitis vinifera HOM05D005468 ORTHO05D006789 4.9e-19 98.6 152 42.1
ATR0733G175 Amborella trichopoda HOM05D005468 ORTHO05D006789 6.4e-19 98.2 152 42.1
CiPaw.16G051900 Carya illinoinensis HOM05D005468 ORTHO05D006789 6.4e-19 98.2 152 42.1
Eucgr.F02400 Eucalyptus grandis HOM05D005468 ORTHO05D006789 6.4e-19 98.2 152 42.1
Manes.18G025300 Manihot esculenta HOM05D005468 ORTHO05D006789 6.4e-19 98.2 152 41.4
TWI56G0523 Tripterygium wilfordii HOM05D005468 ORTHO05D006789 6.4e-19 98.2 152 41.4
Cpa.g.sc64.18 Carica papaya HOM05D005468 ORTHO05D006789 8.4e-19 97.8 152 41.4
CiPaw.15G066600 Carya illinoinensis HOM05D005468 ORTHO05D006789 8.4e-19 97.8 152 41.4
Ciclev10002374m.g Citrus clementina HOM05D005468 ORTHO05D006789 8.4e-19 97.8 152 42.1
Sed0015581 Sechium edule HOM05D005468 ORTHO05D006789 8.4e-19 97.8 152 41.4
CsaV3_3G044590 Cucumis sativus L. HOM05D005468 ORTHO05D006789 1.1e-18 97.4 152 41.4
Dinv36016 Davidia involucrata HOM05D005468 ORTHO05D006789 1.1e-18 97.4 152 41.4
HanXRQChr02g0046441 Helianthus annuus HOM05D005468 ORTHO05D006789 1.1e-18 97.4 154 40.9
Lsat_1_v5_gn_1_19180 Lactuca sativa HOM05D005468 ORTHO05D006789 1.1e-18 97.4 154 40.9
MD08G1039400 Malus domestica HOM05D005468 ORTHO05D006789 1.1e-18 97.4 152 41.4
MD15G1034100 Malus domestica HOM05D005468 ORTHO05D006789 1.1e-18 97.4 152 41.4
Peaxi162Scf00064g00217 Petunia axillaris HOM05D005468 ORTHO05D006789 1.1e-18 97.4 154 41.6
Potri.002G130100 Populus trichocarpa HOM05D005468 ORTHO05D006789 1.1e-18 97.4 152 41.4
Sc15g0006600 Simmondsia chinensis HOM05D005468 ORTHO05D006789 1.1e-18 97.4 152 41.4
Actinidia38034 Actinidia chinensis HOM05D005468 ORTHO05D006789 1.4e-18 97.1 152 41.4
MSTRG.24315 Avicennia marina HOM05D005468 ORTHO05D006789 1.4e-18 97.1 152 40.8
Ca_15981_v3 Cicer arietinum L. HOM05D005468 ORTHO05D006789 1.4e-18 97.1 152 41.4
Migut.C00650 Erythranthe guttata HOM05D005468 ORTHO05D006789 1.4e-18 97.1 152 40.8
FAN15G3574 Fragaria x ananassa HOM05D005468 ORTHO05D006789 1.4e-18 97.1 152 40.8
Glyma.04G035800 Glycine max HOM05D005468 ORTHO05D006789 1.4e-18 97.1 152 41.4
Glyma.06G035800 Glycine max HOM05D005468 ORTHO05D006789 1.4e-18 97.1 152 41.4
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 1.4e-18 97.1 152 41.4
Lalb_Chr23g0266811 Lupinus albus HOM05D005468 ORTHO05D006789 1.4e-18 97.1 152 41.4
Phvul.009G061800 Phaseolus vulgaris HOM05D005468 ORTHO05D006789 1.4e-18 97.1 152 41.4
Prupe.1G387900 Prunus persica HOM05D005468 ORTHO05D006789 1.4e-18 97.1 152 41.4
VMungo1309G2021 Vigna mungo HOM05D005468 ORTHO05D006789 1.4e-18 97.1 152 41.4
arahy.Tifrunner.gnm1.ann1.P2WCGJ Arachis hypogaea HOM05D005468 ORTHO05D006789 1.9e-18 96.7 152 41.4
arahy.Tifrunner.gnm1.ann1.Y0EE8X Arachis hypogaea HOM05D005468 ORTHO05D006789 1.9e-18 96.7 152 41.4
Cfa018481 Carpinus fangiana HOM05D005468 ORTHO05D006789 1.9e-18 96.7 152 40.8
Migut.N02685 Erythranthe guttata HOM05D005468 ORTHO05D006789 1.9e-18 96.7 152 40.8
PGR031G2816 Punica granatum HOM05D005468 ORTHO05D006789 1.9e-18 96.7 154 40.9
SGA_v2.0_scaffold28G11772 Striga asiatica HOM05D005468 ORTHO05D006789 1.9e-18 96.7 152 40.8
Haze_17591 Corylus avellana HOM05D005468 ORTHO05D006789 2.4e-18 96.3 149 41.6
Lj1g0015279 Lotus japonicus HOM05D005468 ORTHO05D006789 2.4e-18 96.3 152 40.8
Nn5g29408 Nelumbo nucifera HOM05D005468 ORTHO05D006789 2.4e-18 96.3 152 40.8
Nn6g32145 Nelumbo nucifera HOM05D005468 ORTHO05D006789 2.4e-18 96.3 152 41.4
Psat5g045200 Pisum sativum HOM05D005468 ORTHO05D006789 2.4e-18 96.3 152 40.8
QL02p006494 Quercus lobata HOM05D005468 ORTHO05D006789 2.4e-18 96.3 152 40.1
ECA247G3714 Erigeron canadensis HOM05D005468 ORTHO05D006789 3.2e-18 95.9 154 40.3
Gohir.A06G015000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 3.2e-18 95.9 152 40.8
Gohir.D06G013000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 3.2e-18 95.9 152 40.8
Gorai.010G015600 Gossypium raimondii HOM05D005468 ORTHO05D006789 3.2e-18 95.9 152 40.8
Potri.014G037100 Populus trichocarpa HOM05D005468 ORTHO05D006789 3.2e-18 95.9 152 40.8
Thecc.08G017100 Theobroma cacao HOM05D005468 ORTHO05D006789 3.2e-18 95.9 152 41.4
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 4.2e-18 95.5 152 41.4
Dinv39358 Davidia involucrata HOM05D005468 ORTHO05D006789 4.2e-18 95.5 152 41.4
Lalb_Chr08g0245731 Lupinus albus HOM05D005468 ORTHO05D006789 4.2e-18 95.5 152 40.8
Medtr3g100940 Medicago truncatula HOM05D005468 ORTHO05D006789 4.2e-18 95.5 152 40.8
Sabra14G0026700 Salix brachista HOM05D005468 ORTHO05D006789 4.2e-18 95.5 152 40.8
TPR.G26072 Trifolium pratense HOM05D005468 ORTHO05D006789 4.2e-18 95.5 152 40.8
CAN.G1002.2 Capsicum annuum HOM05D005468 ORTHO05D006789 5.4e-18 95.1 152 40.8
THA.LOC104803401 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 5.4e-18 95.1 152 40.8
THA.LOC104813200 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 5.4e-18 95.1 152 41.4
Actinidia29851 Actinidia chinensis HOM05D005468 ORTHO05D006789 7.1e-18 94.7 152 40.8
EL10Ac1g01754 Beta vulgaris HOM05D005468 ORTHO05D006789 7.1e-18 94.7 149 41.6
Nitab4.5_0000453g0110 Nicotiana tabacum HOM05D005468 ORTHO05D006789 7.1e-18 94.7 152 40.1
Sabra02G0102000 Salix brachista HOM05D005468 ORTHO05D006789 7.1e-18 94.7 152 40.8
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 7.1e-18 94.7 152 40.1
BolC6t35332H Brassica oleracea HOM05D005468 ORTHO05D006789 9.3e-18 94.4 154 40.9
CANSAT56G1446 Cannabis sativa HOM05D005468 ORTHO05D006789 9.3e-18 94.4 152 40.1
Zm00001eb214040 Zea mays HOM05D005468 ORTHO05D006789 9.3e-18 94.4 152 38.8
BcaB07g33823 Brassica carinata HOM05D005468 ORTHO05D006789 1.6e-17 93.6 152 40.8
BcaC08g42963 Brassica carinata HOM05D005468 ORTHO05D006789 1.6e-17 93.6 152 40.8
C06p02040 Brassica napus HOM05D005468 ORTHO05D006789 1.6e-17 93.6 152 40.8
BraA10t42894Z Brassica rapa HOM05D005468 ORTHO05D006789 1.6e-17 93.6 152 40.8
CARHR037270 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.6e-17 93.6 152 40.8
Manes.05G168700 Manihot esculenta HOM05D005468 ORTHO05D006789 1.6e-17 93.6 152 40.1
Sp1g34660 Schrenkiella parvula HOM05D005468 ORTHO05D006789 1.6e-17 93.6 152 40.8
SEGI_18559 Sequoiadendron giganteum HOM05D005468 ORTHO05D006789 1.6e-17 93.6 152 40.1
BcaC07g37205 Brassica carinata HOM05D005468 ORTHO05D006789 2.1e-17 93.2 152 40.8
A08p05550 Brassica napus HOM05D005468 ORTHO05D006789 2.1e-17 93.2 152 40.8
BolC8t47397H Brassica oleracea HOM05D005468 ORTHO05D006789 2.1e-17 93.2 152 40.8
BraA08t32559Z Brassica rapa HOM05D005468 ORTHO05D006789 2.1e-17 93.2 152 40.8
TAR625G1030 Trochodendron aralioides HOM05D005468 ORTHO05D006789 2.1e-17 93.2 149 40.9
A10p06260 Brassica napus HOM05D005468 ORTHO05D006789 2.7e-17 92.8 149 40.9
AL1G54040 Arabidopsis lyrata HOM05D005468 ORTHO05D006789 3.5e-17 92.4 152 40.1
AT1G47640 Arabidopsis thaliana HOM05D005468 ORTHO05D006789 3.5e-17 92.4 152 40.1
Carub.0001s3642 Capsella rubella HOM05D005468 ORTHO05D006789 3.5e-17 92.4 152 40.1
AUR62033873 Chenopodium quinoa HOM05D005468 ORTHO05D006789 3.5e-17 92.4 232 36.2
Thhalv10011754m.g Eutrema salsugineum HOM05D005468 ORTHO05D006789 3.5e-17 92.4 152 40.1
CDE04G3466 Ceratophyllum demersum HOM05D005468 ORTHO05D006789 4.6e-17 92.0 152 38.8
TAR381G1584 Trochodendron aralioides HOM05D005468 ORTHO05D006789 4.6e-17 92.0 149 39.6
Aa31sc119G90 Aethionema arabicum HOM05D005468 ORTHO05D006789 6.0e-17 91.7 152 39.5
Sopen12g030860 Solanum pennellii HOM05D005468 ORTHO05D006789 6.0e-17 91.7 152 39.5
PGSC0003DMG400015450 Solanum tuberosum HOM05D005468 ORTHO05D006789 6.0e-17 91.7 152 39.5
Aqoxy6G00937 Aquilegia oxysepala HOM05D005468 ORTHO05D006789 7.8e-17 91.3 149 39.6
C08p06100 Brassica napus HOM05D005468 ORTHO05D006789 7.8e-17 91.3 152 40.1
SMO119G0125 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 7.8e-17 91.3 154 38.3
SMO163G0011 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 7.8e-17 91.3 154 38.3
Zm00001eb058600 Zea mays HOM05D005468 ORTHO05D006789 1.3e-16 90.5 152 37.5
Os03g0766000 Oryza sativa ssp. japonica HOM05D005468 ORTHO05D006789 1.7e-16 90.1 152 37.5
HPP92_019640 Vanilla planifolia HOM05D005468 ORTHO05D006789 5.1e-16 88.6 152 37.5
PSO170G5983 Papaver somniferum HOM05D005468 ORTHO05D006789 6.6e-16 88.2 152 37.5
PSO210G2601 Papaver somniferum HOM05D005468 ORTHO05D006789 6.6e-16 88.2 152 37.5
Mapoly0136s0007 Marchantia polymorpha HOM05D005468 ORTHO05D006789 8.7e-16 87.8 149 38.3
BcaB04g17508 Brassica carinata HOM05D005468 ORTHO05D006789 1.5e-15 87.0 152 38.8
CBR_g99 Chara braunii HOM05D005468 ORTHO05D006789 3.3e-15 85.9 154 36.4
CARHR054190 Cardamine hirsuta HOM05D005468 ORTHO05D006789 5.6e-15 85.1 152 38.2
Pp3c3_13070 Physcomitrium patens HOM05D005468 ORTHO05D006789 2.4e-13 79.7 153 34.6
AagrBONN_evm.TU.Sc2ySwM_362.508 Anthoceros agrestis HOM05D005468 ORTHO05D006789 2.2e-11 73.2 149 33.6
Migut.O00871 Erythranthe guttata HOM05D005468 ORTHO05D006789 1.6e-09 67.0 37 78.4
Oeu028451.1 Olea europaea HOM05D005468 ORTHO05D006789 2.7e-09 66.2 50 60.0
AUR62040094 Chenopodium quinoa HOM05D000023 ORTHO05D000014 1.3e-08 63.9 32 87.5
CARHR034590 Cardamine hirsuta HOM05D005468 ORTHO05D006789 3.0e-08 62.8 37 78.4
arahy.Tifrunner.gnm1.ann1.APL3GL Arachis hypogaea HOM05D005468 ORTHO05D006789 5.1e-08 62.0 35 71.4
Sed0011570 Sechium edule HOM05D005468 ORTHO05D006789 6.7e-08 61.6 37 70.3
arahy.Tifrunner.gnm1.ann1.N94XAP Arachis hypogaea HOM05D005468 ORTHO05D006789 7.4e-07 58.2 32 71.9
CARHR259240 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.3e-06 57.4 63 55.6
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 2.1e-06 56.6 38 60.5


User provided reference genes

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