Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G371.64 Capsicum annuum HOM05D007099 ORTHO05D009081 2.3e-54 215.3 109 100.0
Nitab4.5_0000068g0330 Nicotiana tabacum HOM05D007099 ORTHO05D009081 1.5e-53 212.6 108 98.1
Nitab4.5_0012613g0010 Nicotiana tabacum HOM05D007099 ORTHO05D009081 1.5e-53 212.6 108 98.1
Solyc04g079380.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 3.3e-53 211.5 109 97.2
PGSC0003DMG400007997 Solanum tuberosum HOM05D007099 ORTHO05D009081 3.3e-53 211.5 109 97.2
Sopen04g032990 Solanum pennellii HOM05D007099 ORTHO05D009081 1.8e-51 205.7 106 97.2
Peaxi162Scf01092g00115 Petunia axillaris HOM05D007099 ORTHO05D009081 4.2e-48 194.5 101 98.0
Lj2P1221T100 Lonicera japonica HOM05D007099 ORTHO05D009081 2.0e-37 159.1 97 79.4
EL10Ac3g05283 Beta vulgaris HOM05D007099 ORTHO05D009081 3.3e-37 158.3 97 81.4
COL.COLO4_06718 Corchorus olitorius HOM05D007099 ORTHO05D009081 7.5e-37 157.1 107 72.9
Aqoxy12s037 Aquilegia oxysepala HOM05D007099 ORTHO05D009081 9.7e-37 156.8 97 77.3
Hund03588 Selenicereus undatus HOM05D007099 ORTHO05D009081 2.4e-35 152.1 97 78.4
Hund07474 Selenicereus undatus HOM05D007099 ORTHO05D009081 2.4e-35 152.1 97 78.4
Potri.001G424950 Populus trichocarpa HOM05D007099 ORTHO05D009081 4.1e-35 151.4 101 70.3
THA.LOC104825605 Tarenaya hassleriana HOM05D007099 ORTHO05D009081 4.1e-35 151.4 97 75.3
VMungo0647G1684 Vigna mungo HOM05D007099 ORTHO05D009081 4.1e-35 151.4 97 76.3
CiPaw.13G036200 Carya illinoinensis HOM05D007099 ORTHO05D009081 5.3e-35 151.0 101 72.3
Cfa011223 Carpinus fangiana HOM05D007099 ORTHO05D009081 2.7e-34 148.7 101 72.3
Lalb_Chr00c21g0405211 Lupinus albus HOM05D007099 ORTHO05D009081 2.7e-34 148.7 97 75.3
Lalb_Chr00c21g0405401 Lupinus albus HOM05D007099 ORTHO05D009081 2.7e-34 148.7 97 75.3
Lalb_Chr00c24g0407161 Lupinus albus HOM05D007099 ORTHO05D009081 2.7e-34 148.7 97 75.3
Cfa011224 Carpinus fangiana HOM05D007099 ORTHO05D009081 5.9e-34 147.5 101 72.3
Cc11_g04750 Coffea canephora HOM05D007099 ORTHO05D009081 5.9e-34 147.5 97 73.2
Rhsim11G0096700 Rhododendron simsii HOM05D007099 ORTHO05D009081 5.9e-34 147.5 96 74.0
BcaB06g28779 Brassica carinata HOM05D007099 ORTHO05D009081 7.7e-34 147.1 97 74.2
A04p26440 Brassica napus HOM05D007099 ORTHO05D009081 7.7e-34 147.1 97 74.2
A05p11160 Brassica napus HOM05D007099 ORTHO05D009081 7.7e-34 147.1 97 74.2
C04p63850 Brassica napus HOM05D007099 ORTHO05D009081 7.7e-34 147.1 97 74.2
BolC4t27852H Brassica oleracea HOM05D007099 ORTHO05D009081 7.7e-34 147.1 97 74.2
BraA04t18148Z Brassica rapa HOM05D007099 ORTHO05D009081 7.7e-34 147.1 97 74.2
BraA05t20062Z Brassica rapa HOM05D007099 ORTHO05D009081 7.7e-34 147.1 97 74.2
Haze_02608 Corylus avellana HOM05D007099 ORTHO05D009081 7.7e-34 147.1 101 72.3
MD07G1070600 Malus domestica HOM05D007099 ORTHO05D009081 7.7e-34 147.1 96 75.0
Sabra16G0287600 Salix brachista HOM05D007099 ORTHO05D009081 7.7e-34 147.1 101 68.3
MD03G1252400 Malus domestica HOM05D007099 ORTHO05D009081 1.0e-33 146.7 96 75.0
MD07G1069700 Malus domestica HOM05D007099 ORTHO05D009081 1.0e-33 146.7 95 74.7
QL04p041158 Quercus lobata HOM05D007099 ORTHO05D009081 1.0e-33 146.7 100 69.0
Atru.chr1.3070 Acer truncatum HOM05D007099 ORTHO05D009081 1.3e-33 146.4 97 74.2
Atru.chr3.1047 Acer truncatum HOM05D007099 ORTHO05D009081 1.3e-33 146.4 97 74.2
BcaC02g11514 Brassica carinata HOM05D007099 ORTHO05D009081 1.3e-33 146.4 97 74.2
C04p14510 Brassica napus HOM05D007099 ORTHO05D009081 1.3e-33 146.4 97 74.2
BolC4t23034H Brassica oleracea HOM05D007099 ORTHO05D009081 1.3e-33 146.4 97 74.2
QL10p027581 Quercus lobata HOM05D007099 ORTHO05D009081 1.3e-33 146.4 100 68.0
Prupe.2G087000 Prunus persica HOM05D007099 ORTHO05D009081 1.7e-33 146.0 96 74.0
Prupe.2G087700 Prunus persica HOM05D007099 ORTHO05D009081 1.7e-33 146.0 96 74.0
Prupe.8G094900 Prunus persica HOM05D007099 ORTHO05D009081 1.7e-33 146.0 96 74.0
Sp4g16780 Schrenkiella parvula HOM05D007099 ORTHO05D009081 1.7e-33 146.0 97 73.2
CARHR128610 Cardamine hirsuta HOM05D007099 ORTHO05D009081 2.2e-33 145.6 97 73.2
AL4G30490 Arabidopsis lyrata HOM05D007099 ORTHO05D009081 2.9e-33 145.2 97 72.2
Zm00001eb261270 Zea mays HOM05D002252 ORTHO05D002451 2.9e-33 145.2 97 75.3
Carub.0004s1619 Capsella rubella HOM05D007099 ORTHO05D009081 3.8e-33 144.8 97 72.2
Thhalv10017324m.g Eutrema salsugineum HOM05D007099 ORTHO05D009081 3.8e-33 144.8 97 72.2
AT2G34520 Arabidopsis thaliana HOM05D007099 ORTHO05D009081 6.5e-33 144.1 97 71.1
Glyma.05G091932 Glycine max HOM05D007099 ORTHO05D009081 6.5e-33 144.1 97 73.2
HanXRQChr10g0308131 Helianthus annuus HOM05D007099 ORTHO05D009081 6.5e-33 144.1 97 73.2
RcHm_v2.0_Chr1g0333591 Rosa chinensis HOM05D007099 ORTHO05D009081 6.5e-33 144.1 96 75.0
AUR62006089 Chenopodium quinoa HOM05D007099 ORTHO05D009081 8.5e-33 143.7 97 74.2
AUR62019404 Chenopodium quinoa HOM05D007099 ORTHO05D009081 8.5e-33 143.7 97 74.2
BcaB02g09535 Brassica carinata HOM05D007099 ORTHO05D009081 1.1e-32 143.3 97 72.2
MELO3C019879.2 Cucumis melo HOM05D007099 ORTHO05D009081 1.1e-32 143.3 97 72.2
Manes.15G073400 Manihot esculenta HOM05D007099 ORTHO05D009081 1.5e-32 142.9 97 73.2
ClCG08G008070 Citrullus lanatus HOM05D007099 ORTHO05D009081 1.9e-32 142.5 97 72.2
RcHm_v2.0_Chr5g0056441 Rosa chinensis HOM05D007099 ORTHO05D009081 1.9e-32 142.5 96 75.0
Aa31LG1G28210 Aethionema arabicum HOM05D007099 ORTHO05D009081 2.5e-32 142.1 97 71.1
CsaV3_2G032930 Cucumis sativus L. HOM05D007099 ORTHO05D009081 5.5e-32 141.0 97 72.2
FAN06G3861 Fragaria x ananassa HOM05D007099 ORTHO05D009081 5.5e-32 141.0 95 73.7
FAN10G1031 Fragaria x ananassa HOM05D007099 ORTHO05D009081 5.5e-32 141.0 95 73.7
FAN16G1526 Fragaria x ananassa HOM05D007099 ORTHO05D009081 5.5e-32 141.0 95 72.6
Ciclev10022860m.g Citrus clementina HOM05D007099 ORTHO05D009081 7.2e-32 140.6 97 72.2
Lsat_1_v5_gn_9_15021 Lactuca sativa HOM05D007099 ORTHO05D009081 9.4e-32 140.2 97 72.2
SHI18971 Sapria himalayana HOM05D007099 ORTHO05D009081 9.4e-32 140.2 101 71.3
CANSAT56G2898 Cannabis sativa HOM05D007099 ORTHO05D009081 1.2e-31 139.8 100 68.0
FvH4_7g06080 Fragaria vesca HOM05D007099 ORTHO05D009081 2.1e-31 139.0 96 72.9
Sed0026927 Sechium edule HOM05D007099 ORTHO05D009081 2.1e-31 139.0 97 71.1
SalBow8G2603 Salvia bowleyana HOM05D007099 ORTHO05D009081 3.6e-31 138.3 97 72.2
Ah.07g205590 Amaranthus hybridus HOM05D007099 ORTHO05D009081 6.1e-31 137.5 95 72.6
DCAR_014524 Daucus carota HOM05D007099 ORTHO05D009081 8.0e-31 137.1 97 71.1
TPR.G27292 Trifolium pratense HOM05D007099 ORTHO05D009081 2.3e-30 135.6 87 75.9
arahy.Tifrunner.gnm1.ann1.5L8EUV Arachis hypogaea HOM05D007099 ORTHO05D009081 3.0e-30 135.2 95 72.6
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 6.8e-30 134.0 97 68.0
PSO541G4216 Papaver somniferum HOM05D007099 ORTHO05D009081 6.8e-30 134.0 98 69.4
PSO675G8234 Papaver somniferum HOM05D007099 ORTHO05D009081 1.5e-29 132.9 98 68.4
Gorai.001G161900 Gossypium raimondii HOM05D007099 ORTHO05D009081 4.4e-29 131.3 79 79.7
PSO541G5582 Papaver somniferum HOM05D007099 ORTHO05D009081 7.5e-29 130.6 97 68.0
FAN12G2091 Fragaria x ananassa HOM05D007099 ORTHO05D009081 2.8e-28 128.6 92 69.6
BcaB02g09534 Brassica carinata HOM05D007099 ORTHO05D009081 3.7e-28 128.3 87 72.4
arahy.Tifrunner.gnm1.ann1.N1QJ6Q Arachis hypogaea HOM05D007099 ORTHO05D009081 4.8e-28 127.9 94 68.1
PSO675G5170 Papaver somniferum HOM05D007099 ORTHO05D009081 4.8e-28 127.9 98 68.4
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 1.4e-27 126.3 94 67.0
ECA234G1703 Erigeron canadensis HOM05D007099 ORTHO05D009081 2.9e-25 118.6 97 60.8
FvH4_3g30490 Fragaria vesca HOM05D007099 ORTHO05D009081 4.2e-24 114.8 79 72.2
FAN11G0918 Fragaria x ananassa HOM05D007099 ORTHO05D009081 4.2e-24 114.8 79 72.2
Solyc00g500363.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 6.8e-22 107.5 69 71.0
arahy.Tifrunner.gnm1.ann1.BT1F12 Arachis hypogaea HOM05D007099 ORTHO05D009081 1.2e-21 106.7 75 70.7
Nn1g10177 Nelumbo nucifera HOM05D007099 ORTHO05D009081 1.2e-21 106.7 63 79.4
Gohir.A01G126800 Gossypium hirsutum HOM05D007099 ORTHO05D009081 9.8e-21 103.6 68 72.1
SMO134G0293 Selaginella moellendorffii HOM05D007099 ORTHO05D009081 6.3e-20 100.9 95 56.8
ClCG01G010070 Citrullus lanatus HOM05D007099 ORTHO05D009081 8.3e-20 100.5 86 59.3
Lalb_Chr11g0070131 Lupinus albus HOM05D007099 ORTHO05D009081 1.1e-19 100.1 63 76.2
Lalb_Chr11g0070211 Lupinus albus HOM05D007099 ORTHO05D009081 1.1e-19 100.1 63 76.2
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 2.4e-19 99.0 87 60.9
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 4.1e-19 98.2 71 66.2
Solyc09g050030.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 1.3e-17 93.2 63 68.3
Rhsim10G0009600 Rhododendron simsii HOM05D000071 ORTHO05D000029 1.7e-17 92.8 66 66.7
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 5.0e-17 91.3 63 68.3
arahy.Tifrunner.gnm1.ann1.HLYH4Q Arachis hypogaea HOM05D007099 ORTHO05D009081 8.6e-17 90.5 68 64.7
Mapoly0991s0001 Marchantia polymorpha HOM05D007099 ORTHO05D009081 4.3e-16 88.2 62 67.7
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 2.3e-14 82.4 49 81.6
Cre17.g726300 Chlamydomonas reinhardtii HOM05D007099 ORTHO05D009081 5.8e-13 77.8 97 43.3
Nitab4.5_0004300g0130 Nicotiana tabacum HOM05D002864 ORTHO05D007972 1.4e-11 73.2 51 68.6
Pp3c2_23460 Physcomitrium patens HOM05D007099 ORTHO05D009081 4.1e-11 71.6 53 60.4
Phvul.011G109300 Phaseolus vulgaris HOM05D007099 ORTHO05D009081 2.0e-10 69.3 71 53.5
Peaxi162Scf44104g00001 Petunia axillaris HOM05D007099 ORTHO05D009081 4.6e-10 68.2 36 80.6
Medtr3g035610 Medicago truncatula HOM05D000388 ORTHO05D009843 2.3e-09 65.9 94 41.5
SEGI_01256 Sequoiadendron giganteum HOM05D000388 ORTHO05D009843 2.3e-09 65.9 94 41.5
Nitab4.5_0000033g0070 Nicotiana tabacum HOM05D007099 ORTHO05D009081 2.5e-08 62.4 47 66.0
GSVIVG01018700001 Vitis vinifera HOM05D007099 ORTHO05D009081 4.3e-08 61.6 74 45.9
Sed0009296 Sechium edule HOM05D000388 ORTHO05D009843 3.6e-07 58.5 95 42.1
Sed0020360 Sechium edule HOM05D000388 ORTHO05D009843 3.6e-07 58.5 95 42.1
PSO548G0009 Papaver somniferum HOM05D000388 ORTHO05D009843 4.7e-07 58.2 95 41.1
PGR111G0009 Punica granatum HOM05D000388 ORTHO05D009843 6.2e-07 57.8 94 38.3
Nn020s41509 Nelumbo nucifera HOM05D000388 ORTHO05D009843 8.0e-07 57.4 94 38.3
Nn055s41931 Nelumbo nucifera HOM05D000388 ORTHO05D009843 8.0e-07 57.4 94 38.3
Nn082s42681 Nelumbo nucifera HOM05D000388 ORTHO05D009843 8.0e-07 57.4 94 38.3
Nn287s46145 Nelumbo nucifera HOM05D000388 ORTHO05D009843 8.0e-07 57.4 94 38.3
BNapus_Darmor_BZH_scaffold_253p00110 Brassica napus HOM05D000388 ORTHO05D009843 1.1e-06 57.0 95 41.1
BNapus_Darmor_BZH_scaffold_287p00030 Brassica napus HOM05D000388 ORTHO05D000473 1.1e-06 57.0 95 41.1
C09p40130 Brassica napus HOM05D000388 ORTHO05D009843 1.1e-06 57.0 95 41.1
BolC7t41727H Brassica oleracea HOM05D000388 ORTHO05D000473 1.1e-06 57.0 95 41.1
BolSC29t60455H Brassica oleracea HOM05D000388 ORTHO05D000473 1.1e-06 57.0 95 41.1
BolSC45t60943H Brassica oleracea HOM05D000388 ORTHO05D000473 1.1e-06 57.0 95 41.1
BolSC46t60990H Brassica oleracea HOM05D000388 ORTHO05D000473 1.1e-06 57.0 95 41.1
BraSC140t45581Z Brassica rapa HOM05D000388 ORTHO05D000473 1.1e-06 57.0 95 41.1
BraSC151t45706Z Brassica rapa HOM05D000388 ORTHO05D009843 1.1e-06 57.0 95 41.1
BraSC179t45796Z Brassica rapa HOM05D000388 ORTHO05D000473 1.1e-06 57.0 95 41.1
Lalb_Chr00c21g0405241 Lupinus albus HOM05D007099 ORTHO05D009081 1.1e-06 57.0 36 75.0
Lalb_Chr23g0270511 Lupinus albus HOM05D000388 ORTHO05D009843 1.1e-06 57.0 94 38.3
LjContig00318g0006350 Lotus japonicus HOM05D000388 ORTHO05D009843 1.4e-06 56.6 94 38.3
RcHm_v2.0_Chr3g0491801 Rosa chinensis HOM05D000388 ORTHO05D009843 1.8e-06 56.2 94 39.4
RcHm_v2.0_CPg0502271 Rosa chinensis HOM05D000388 ORTHO05D009843 1.8e-06 56.2 94 38.3
TWI15G0535 Tripterygium wilfordii HOM05D000388 ORTHO05D009843 1.8e-06 56.2 94 36.2
BcaC04g20699 Brassica carinata HOM05D000388 ORTHO05D009843 3.1e-06 55.5 94 37.2
CAN.G142.10 Capsicum annuum HOM05D000388 ORTHO05D009843 3.1e-06 55.5 95 38.9
CAN.G500.81 Capsicum annuum HOM05D000388 ORTHO05D009843 3.1e-06 55.5 95 38.9
CAN.G653.5 Capsicum annuum HOM05D000388 ORTHO05D009843 3.1e-06 55.5 95 38.9
CARHR281990 Cardamine hirsuta HOM05D000388 ORTHO05D009843 3.1e-06 55.5 95 41.1
Gohir.D08G129080 Gossypium hirsutum HOM05D000388 ORTHO05D009843 4.0e-06 55.1 94 37.2
Potri.013G142336 Populus trichocarpa HOM05D000388 ORTHO05D009843 4.0e-06 55.1 94 37.2
AL2G20790 Arabidopsis lyrata HOM05D000388 ORTHO05D009843 5.2e-06 54.7 94 37.2
ATCG00330 Arabidopsis thaliana HOM05D000388 ORTHO05D009843 5.2e-06 54.7 94 37.2
Hma1.2p1_0051F.1_g029490 Hydrangea macrophylla HOM05D000388 ORTHO05D009843 5.2e-06 54.7 94 37.2
CAN.G679.7 Capsicum annuum HOM05D000388 ORTHO05D009843 6.8e-06 54.3 94 35.1
LjContig00489g0027265 Lotus japonicus HOM05D000388 ORTHO05D009843 8.9e-06 53.9 96 35.4


User provided reference genes

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