Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G37.10 Capsicum annuum HOM05D006590 ORTHO05D008427 7.8e-32 139.8 69 100.0
CAN.G108.67 Capsicum annuum HOM05D006590 ORTHO05D008427 1.7e-15 85.5 56 75.0
Solyc03g083420.4 Solanum lycopersicum HOM05D006590 ORTHO05D008427 3.3e-14 81.3 56 69.6
Sopen03g023190 Solanum pennellii HOM05D006590 ORTHO05D008427 3.3e-14 81.3 56 69.6
PGSC0003DMG400009120 Solanum tuberosum HOM05D006590 ORTHO05D008427 3.3e-14 81.3 56 69.6
Nitab4.5_0000714g0140 Nicotiana tabacum HOM05D006590 ORTHO05D008427 2.1e-13 78.6 56 67.9
Nitab4.5_0007081g0010 Nicotiana tabacum HOM05D006590 ORTHO05D008427 2.1e-13 78.6 56 67.9
Peaxi162Scf00550g00546 Petunia axillaris HOM05D006590 ORTHO05D008427 9.0e-12 73.2 56 67.9
Sc13g0009780 Simmondsia chinensis HOM05D006590 ORTHO05D008427 1.3e-10 69.3 56 58.9
arahy.Tifrunner.gnm1.ann1.ICGL65 Arachis hypogaea HOM05D006590 ORTHO05D008427 4.9e-10 67.4 56 60.7
CARHR266570 Cardamine hirsuta HOM05D006590 ORTHO05D008427 4.9e-10 67.4 55 60.0
Cfa016251 Carpinus fangiana HOM05D006590 ORTHO05D008427 6.4e-10 67.0 56 57.1
Hma1.2p1_0404F.1_g145500 Hydrangea macrophylla HOM05D006590 ORTHO05D008427 8.4e-10 66.6 56 57.1
TAR375G1022 Trochodendron aralioides HOM05D006590 ORTHO05D008427 8.4e-10 66.6 56 55.4
ClCG05G008870 Citrullus lanatus HOM05D006590 ORTHO05D008427 1.4e-09 65.9 56 55.4
MELO3C008489.2 Cucumis melo HOM05D006590 ORTHO05D008427 1.4e-09 65.9 56 55.4
CsaV3_3G027870 Cucumis sativus L. HOM05D006590 ORTHO05D008427 1.4e-09 65.9 56 55.4
arahy.Tifrunner.gnm1.ann1.X012TI Arachis hypogaea HOM05D006590 ORTHO05D008427 1.9e-09 65.5 56 58.9
Ca_16698_v3 Cicer arietinum L. HOM05D006590 ORTHO05D008427 1.9e-09 65.5 56 58.9
unitig_899.g15485 Utricularia gibba HOM05D006590 ORTHO05D008427 1.9e-09 65.5 59 57.6
Migut.F00225 Erythranthe guttata HOM05D006590 ORTHO05D008427 2.4e-09 65.1 56 55.4
Rhsim03G0207800 Rhododendron simsii HOM05D006590 ORTHO05D008427 2.4e-09 65.1 54 59.3
TPR.G17286 Trifolium pratense HOM05D006590 ORTHO05D008427 2.4e-09 65.1 56 58.9
CiPaw.05G251800 Carya illinoinensis HOM05D006590 ORTHO05D008427 3.2e-09 64.7 56 55.4
Oeu041046.1 Olea europaea HOM05D006590 ORTHO05D008427 3.2e-09 64.7 56 57.1
Psat5g078080 Pisum sativum HOM05D006590 ORTHO05D008427 3.2e-09 64.7 56 58.9
Sabra15G0013100 Salix brachista HOM05D006590 ORTHO05D008427 3.2e-09 64.7 56 57.1
Zm00001eb158040 Zea mays HOM05D006590 ORTHO05D008427 3.2e-09 64.7 56 50.0
Ciclev10004491m.g Citrus clementina HOM05D006590 ORTHO05D008427 4.2e-09 64.3 56 57.1
Haze_00189 Corylus avellana HOM05D006590 ORTHO05D008427 4.2e-09 64.3 56 55.4
Dinv35324 Davidia involucrata HOM05D006590 ORTHO05D008427 4.2e-09 64.3 56 57.1
Prupe.2G311400 Prunus persica HOM05D006590 ORTHO05D008427 4.2e-09 64.3 56 57.1
PGR042G1173 Punica granatum HOM05D006590 ORTHO05D008427 4.2e-09 64.3 56 57.1
RcHm_v2.0_Chr1g0380971 Rosa chinensis HOM05D006590 ORTHO05D008427 4.2e-09 64.3 56 57.1
Sed0010238 Sechium edule HOM05D006590 ORTHO05D008427 4.2e-09 64.3 56 55.4
AL8G28150 Arabidopsis lyrata HOM05D006590 ORTHO05D008427 5.4e-09 63.9 56 57.1
FvH4_7g31750 Fragaria vesca HOM05D006590 ORTHO05D008427 5.4e-09 63.9 56 57.1
FAN01G1498 Fragaria x ananassa HOM05D006590 ORTHO05D008427 5.4e-09 63.9 56 57.1
FAN03G2401 Fragaria x ananassa HOM05D006590 ORTHO05D008427 5.4e-09 63.9 56 57.1
FAN06G3161 Fragaria x ananassa HOM05D006590 ORTHO05D008427 5.4e-09 63.9 56 57.1
FAN06G3878 Fragaria x ananassa HOM05D006590 ORTHO05D008427 5.4e-09 63.9 56 57.1
FAN10G1373 Fragaria x ananassa HOM05D006590 ORTHO05D008427 5.4e-09 63.9 56 57.1
FAN10G2802 Fragaria x ananassa HOM05D006590 ORTHO05D008427 5.4e-09 63.9 56 57.1
MD01G1219800 Malus domestica HOM05D006590 ORTHO05D008427 5.4e-09 63.9 56 57.1
QL09p009505 Quercus lobata HOM05D006590 ORTHO05D008427 5.4e-09 63.9 56 55.4
THA.LOC104800297 Tarenaya hassleriana HOM05D006590 ORTHO05D008427 5.4e-09 63.9 56 57.1
CSS0003993 Camellia sinensis var. sinensis HOM05D006590 ORTHO05D008427 7.1e-09 63.5 56 55.4
CSS0014515 Camellia sinensis var. sinensis HOM05D006590 ORTHO05D008427 7.1e-09 63.5 56 55.4
Thhalv10012882m.g Eutrema salsugineum HOM05D006590 ORTHO05D008427 7.1e-09 63.5 56 55.4
MBI07_g07100_MAGBIO Magnolia biondii HOM05D006590 ORTHO05D008427 7.1e-09 63.5 56 55.4
vmacro06540 Vaccinium macrocarpon HOM05D006590 ORTHO05D008427 7.1e-09 63.5 56 53.6
Atru.chr1.163 Acer truncatum HOM05D006590 ORTHO05D008427 9.3e-09 63.2 56 55.4
COL.COLO4_11262 Corchorus olitorius HOM05D006590 ORTHO05D008427 9.3e-09 63.2 56 55.4
GSVIVG01038710001 Vitis vinifera HOM05D006590 ORTHO05D008427 9.3e-09 63.2 56 53.6
AT5G53450 Arabidopsis thaliana HOM05D006590 ORTHO05D008427 1.2e-08 62.8 56 57.1
Cc02_g01670 Coffea canephora HOM05D006590 ORTHO05D008427 1.2e-08 62.8 56 58.9
Gohir.D12G251400 Gossypium hirsutum HOM05D006590 ORTHO05D008427 1.2e-08 62.8 56 55.4
Gorai.008G269500 Gossypium raimondii HOM05D006590 ORTHO05D008427 1.2e-08 62.8 56 55.4
Gohir.A12G250600 Gossypium hirsutum HOM05D006590 ORTHO05D008427 1.6e-08 62.4 56 55.4
Medtr3g091290 Medicago truncatula HOM05D006590 ORTHO05D008427 1.6e-08 62.4 56 55.4
Duzib205G0486 Durio zibethinus HOM05D006590 ORTHO05D008427 2.1e-08 62.0 56 53.6
Glyma.04G236600 Glycine max HOM05D006590 ORTHO05D008427 2.1e-08 62.0 56 53.6
Glyma.06G127700 Glycine max HOM05D006590 ORTHO05D008427 2.1e-08 62.0 56 53.6
PSO063G2913 Papaver somniferum HOM05D006590 ORTHO05D008427 2.1e-08 62.0 56 51.8
PSO170G2823 Papaver somniferum HOM05D006590 ORTHO05D008427 2.1e-08 62.0 56 51.8
Thecc.03G196200 Theobroma cacao HOM05D006590 ORTHO05D008427 2.1e-08 62.0 56 53.6
Actinidia08640 Actinidia chinensis HOM05D006590 ORTHO05D008427 2.7e-08 61.6 56 51.8
Carub.0008s1361 Capsella rubella HOM05D006590 ORTHO05D008427 2.7e-08 61.6 56 55.4
Os01g0655500 Oryza sativa ssp. japonica HOM05D006590 ORTHO05D008427 3.5e-08 61.2 56 48.2
Aa31LG3G9610 Aethionema arabicum HOM05D006590 ORTHO05D008427 4.6e-08 60.8 38 73.7
Aqoxy5G04233 Aquilegia oxysepala HOM05D006590 ORTHO05D008427 4.6e-08 60.8 56 51.8
A10p10910 Brassica napus HOM05D001108 ORTHO05D001619 4.6e-08 60.8 56 55.4
C09p43300 Brassica napus HOM05D001108 ORTHO05D001619 4.6e-08 60.8 56 55.4
BolC9t57211H Brassica oleracea HOM05D006590 ORTHO05D008427 4.6e-08 60.8 56 55.4
BraA10t43179Z Brassica rapa HOM05D006590 ORTHO05D008427 4.6e-08 60.8 56 55.4
DCAR_014541 Daucus carota HOM05D006590 ORTHO05D008427 4.6e-08 60.8 56 53.6
Lalb_Chr08g0240321 Lupinus albus HOM05D006590 ORTHO05D008427 4.6e-08 60.8 56 55.4
Manes.06G159700 Manihot esculenta HOM05D006590 ORTHO05D008427 4.6e-08 60.8 56 53.6
Phvul.009G053500 Phaseolus vulgaris HOM05D006590 ORTHO05D008427 4.6e-08 60.8 56 53.6
Potri.015G017100 Populus trichocarpa HOM05D006590 ORTHO05D008427 4.6e-08 60.8 56 57.1
Sp6g15580 Schrenkiella parvula HOM05D006590 ORTHO05D008427 4.6e-08 60.8 56 55.4
TWI14G0328 Tripterygium wilfordii HOM05D006590 ORTHO05D008427 4.6e-08 60.8 56 53.6
HPP92_006416 Vanilla planifolia HOM05D006590 ORTHO05D008427 4.6e-08 60.8 56 51.8
BcaB08g35710 Brassica carinata HOM05D006590 ORTHO05D008427 6.0e-08 60.5 56 55.4
HanXRQChr09g0250931 Helianthus annuus HOM05D006590 ORTHO05D008427 7.9e-08 60.1 43 67.4
Eucgr.A01466 Eucalyptus grandis HOM05D006590 ORTHO05D008427 1.0e-07 59.7 56 50.0
SEGI_37244 Sequoiadendron giganteum HOM05D006590 ORTHO05D008427 1.0e-07 59.7 50 60.0
Cpa.g.sc3.70 Carica papaya HOM05D006590 ORTHO05D008427 1.3e-07 59.3 55 56.4
Nn1g01869 Nelumbo nucifera HOM05D006590 ORTHO05D008427 1.3e-07 59.3 56 50.0
ECA232G3273 Erigeron canadensis HOM05D006590 ORTHO05D008427 1.8e-07 58.9 56 55.4
Lj1g0007393 Lotus japonicus HOM05D006590 ORTHO05D008427 1.8e-07 58.9 56 50.0
SGA_v2.0_scaffold44G16790 Striga asiatica HOM05D006590 ORTHO05D008427 2.3e-07 58.5 56 51.8
VMungo1309G0677 Vigna mungo HOM05D006590 ORTHO05D008427 2.3e-07 58.5 55 52.7
EL10Ac3g05300 Beta vulgaris HOM05D006590 ORTHO05D008427 3.0e-07 58.2 53 49.1
AUR62006110 Chenopodium quinoa HOM05D006590 ORTHO05D008427 3.9e-07 57.8 53 50.9
AUR62019378 Chenopodium quinoa HOM05D006590 ORTHO05D008427 3.9e-07 57.8 53 50.9
SalBow4G1653 Salvia bowleyana HOM05D006590 ORTHO05D008427 3.9e-07 57.8 47 59.6
ATR0602G100 Amborella trichopoda HOM05D006590 ORTHO05D008427 5.1e-07 57.4 56 50.0
CANSAT21G0035 Cannabis sativa HOM05D006590 ORTHO05D008427 5.1e-07 57.4 56 50.0
Lj1C1015G5 Lonicera japonica HOM05D006590 ORTHO05D008427 1.1e-06 56.2 51 51.0


User provided reference genes

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