Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G363.5 Capsicum annuum HOM05D001944 ORTHO05D002405 3.1e-165 585.1 307 100.0
PGSC0003DMG400019409 Solanum tuberosum HOM05D001944 ORTHO05D002405 1.2e-68 264.2 513 38.4
Solyc10g011940.1 Solanum lycopersicum HOM05D001944 ORTHO05D002405 1.5e-66 257.3 414 44.2
Sopen10g005720 Solanum pennellii HOM05D001944 ORTHO05D002405 8.2e-65 251.5 509 38.1
Nitab4.5_0000101g0280 Nicotiana tabacum HOM05D001944 ORTHO05D002405 2.0e-42 177.2 572 30.1
Peaxi162Scf00123g00910 Petunia axillaris HOM05D001944 ORTHO05D002405 6.3e-41 172.2 405 37.3
Nitab4.5_0005320g0010 Nicotiana tabacum HOM05D001944 ORTHO05D002405 4.1e-40 169.5 571 29.2
CAN.G326.11 Capsicum annuum HOM05D001944 ORTHO05D002405 7.7e-31 138.7 87 79.3
Migut.N02586 Erythranthe guttata HOM05D001944 ORTHO05D002405 5.2e-19 99.4 85 57.6
MSTRG.17786 Avicennia marina HOM05D001944 ORTHO05D002405 2.2e-17 94.0 85 52.9
SGA_v2.0_scaffold127G34027 Striga asiatica HOM05D001944 ORTHO05D002405 2.2e-17 94.0 85 54.1
TAR369G0775 Trochodendron aralioides HOM05D001944 ORTHO05D002405 2.9e-17 93.6 85 57.6
GSVIVG01025216001 Vitis vinifera HOM05D001944 ORTHO05D002405 4.9e-17 92.8 85 56.5
Sed0024562 Sechium edule HOM05D001944 ORTHO05D002405 6.4e-17 92.4 101 47.5
Ca_01379_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 8.3e-17 92.0 85 56.5
Ca_01395_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 8.3e-17 92.0 85 56.5
TAR623G0602 Trochodendron aralioides HOM05D001944 ORTHO05D002405 8.3e-17 92.0 85 57.6
TAR636G3431 Trochodendron aralioides HOM05D001944 ORTHO05D002405 8.3e-17 92.0 87 54.0
Rhsim05G0179600 Rhododendron simsii HOM05D001944 ORTHO05D002405 1.1e-16 91.7 93 52.7
Cc06_g04010 Coffea canephora HOM05D001944 ORTHO05D002405 3.2e-16 90.1 85 51.8
Psat5g279720 Pisum sativum HOM05D001944 ORTHO05D002405 4.1e-16 89.7 85 56.5
SGA_v2.0_scaffold40G15544 Striga asiatica HOM05D001944 ORTHO05D002405 5.4e-16 89.4 85 50.6
Lalb_Chr24g0394751 Lupinus albus HOM05D001944 ORTHO05D002405 7.0e-16 89.0 85 52.9
Oeu056301.1 Olea europaea HOM05D001944 ORTHO05D002405 7.0e-16 89.0 88 52.3
arahy.Tifrunner.gnm1.ann1.LUG37R Arachis hypogaea HOM05D001944 ORTHO05D002405 9.2e-16 88.6 85 50.6
arahy.Tifrunner.gnm1.ann1.R0WL9G Arachis hypogaea HOM05D001944 ORTHO05D002405 9.2e-16 88.6 85 50.6
MD03G1121600 Malus domestica HOM05D001944 ORTHO05D002405 9.2e-16 88.6 85 55.3
TPR.G11481 Trifolium pratense HOM05D001944 ORTHO05D002405 9.2e-16 88.6 85 52.9
VMungo1080G0782 Vigna mungo HOM05D001944 ORTHO05D002405 9.2e-16 88.6 85 52.9
ClCG03G002980 Citrullus lanatus HOM05D001944 ORTHO05D002405 1.2e-15 88.2 86 51.2
FAN16G2569 Fragaria x ananassa HOM05D001944 ORTHO05D002405 1.2e-15 88.2 85 54.1
FAN25G3826 Fragaria x ananassa HOM05D001944 ORTHO05D002405 1.2e-15 88.2 85 54.1
QL01p026770 Quercus lobata HOM05D001944 ORTHO05D002405 1.2e-15 88.2 85 49.4
Glyma.12G175400 Glycine max HOM05D001944 ORTHO05D002405 1.6e-15 87.8 85 54.1
Sed0024099 Sechium edule HOM05D001944 ORTHO05D002405 1.6e-15 87.8 87 49.4
TWI79G1706 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 1.6e-15 87.8 85 50.6
Lj2A114T42 Lonicera japonica HOM05D001944 ORTHO05D002405 2.0e-15 87.4 85 52.9
MELO3C004905.2 Cucumis melo HOM05D001944 ORTHO05D002405 2.7e-15 87.0 86 50.0
CsaV3_1G013920 Cucumis sativus L. HOM05D001944 ORTHO05D002405 2.7e-15 87.0 86 50.0
FvH4_3g31740 Fragaria vesca HOM05D001944 ORTHO05D002405 2.7e-15 87.0 85 52.9
FAN11G3960 Fragaria x ananassa HOM05D001944 ORTHO05D002405 2.7e-15 87.0 85 52.9
Cfa011296 Carpinus fangiana HOM05D001944 ORTHO05D002405 5.9e-15 85.9 85 51.8
Haze_23780 Corylus avellana HOM05D001944 ORTHO05D002405 5.9e-15 85.9 85 51.8
Phvul.005G133500 Phaseolus vulgaris HOM05D001944 ORTHO05D002405 5.9e-15 85.9 84 53.6
MD11G1139900 Malus domestica HOM05D001944 ORTHO05D002405 7.8e-15 85.5 85 54.1
RcHm_v2.0_Chr5g0058411 Rosa chinensis HOM05D001944 ORTHO05D002405 7.8e-15 85.5 85 51.8
SGA_v2.0_scaffold180G39633 Striga asiatica HOM05D001944 ORTHO05D002405 7.8e-15 85.5 87 50.6
TAR633G2605 Trochodendron aralioides HOM05D001944 ORTHO05D002405 7.8e-15 85.5 136 39.7
Actinidia19662 Actinidia chinensis HOM05D001944 ORTHO05D002405 1.0e-14 85.1 85 52.9
SalBow3G2448 Salvia bowleyana HOM05D001944 ORTHO05D002405 1.0e-14 85.1 84 51.2
Sopen06g005090 Solanum pennellii HOM05D001944 ORTHO05D002405 1.0e-14 85.1 85 49.4
Actinidia07154 Actinidia chinensis HOM05D001944 ORTHO05D002405 1.3e-14 84.7 85 52.9
Dinv32718 Davidia involucrata HOM05D001944 ORTHO05D002405 1.3e-14 84.7 85 50.6
FAN21G2742 Fragaria x ananassa HOM05D001944 ORTHO05D002405 1.3e-14 84.7 85 52.9
Nn2g13727 Nelumbo nucifera HOM05D001944 ORTHO05D002405 1.3e-14 84.7 85 51.8
Sc20g0005300 Simmondsia chinensis HOM05D001944 ORTHO05D002405 1.3e-14 84.7 85 48.2
Solyc06g010240.3 Solanum lycopersicum HOM05D001944 ORTHO05D002405 1.3e-14 84.7 85 49.4
CiPaw.14G085200 Carya illinoinensis HOM05D001944 ORTHO05D002405 1.7e-14 84.3 85 51.8
Glyma.13G324500 Glycine max HOM05D001944 ORTHO05D002405 1.7e-14 84.3 85 51.8
Hma1.2p1_0058F.1_g032360 Hydrangea macrophylla HOM05D001944 ORTHO05D002405 1.7e-14 84.3 85 48.2
Lj2C1021G5 Lonicera japonica HOM05D001944 ORTHO05D002405 1.7e-14 84.3 85 49.4
Potri.004G212700 Populus trichocarpa HOM05D001944 ORTHO05D002405 2.3e-14 84.0 85 50.6
Thecc.05G062600 Theobroma cacao HOM05D001944 ORTHO05D002405 2.3e-14 84.0 85 51.8
Dinv37298 Davidia involucrata HOM05D001944 ORTHO05D002405 3.0e-14 83.6 85 51.8
Medtr2g095030 Medicago truncatula HOM05D001944 ORTHO05D002405 3.0e-14 83.6 85 55.3
QL07p044103 Quercus lobata HOM05D001944 ORTHO05D002405 3.0e-14 83.6 85 50.6
QL93p2013_0009 Quercus lobata HOM05D001944 ORTHO05D002405 3.0e-14 83.6 85 50.6
Ca_08850_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 3.9e-14 83.2 106 46.2
Manes.03G122401 Manihot esculenta HOM05D001944 ORTHO05D002405 3.9e-14 83.2 85 48.2
PSO339G1466 Papaver somniferum HOM05D001944 ORTHO05D002405 3.9e-14 83.2 87 48.3
Duzib128G0909 Durio zibethinus HOM05D001944 ORTHO05D002405 5.0e-14 82.8 85 50.6
Gohir.A08G199401 Gossypium hirsutum HOM05D001944 ORTHO05D002405 5.0e-14 82.8 85 52.9
Gohir.D08G216700 Gossypium hirsutum HOM05D001944 ORTHO05D002405 6.6e-14 82.4 85 52.9
Gorai.004G230500 Gossypium raimondii HOM05D001944 ORTHO05D002405 6.6e-14 82.4 85 52.9
Lsat_1_v5_gn_2_98901 Lactuca sativa HOM05D001944 ORTHO05D002405 6.6e-14 82.4 85 45.9
Lj1g0027821 Lotus japonicus HOM05D001944 ORTHO05D002405 8.6e-14 82.0 106 43.4
Lj3g0013525 Lotus japonicus HOM05D001944 ORTHO05D002405 8.6e-14 82.0 85 52.9
CAN.G171.6 Capsicum annuum HOM05D001944 ORTHO05D002405 1.1e-13 81.6 85 49.4
Aqoxy1G01204 Aquilegia oxysepala HOM05D001944 ORTHO05D002405 1.5e-13 81.3 85 51.8
Aqoxy7G00183 Aquilegia oxysepala HOM05D001944 ORTHO05D002405 1.5e-13 81.3 85 51.8
Duzib168G0647 Durio zibethinus HOM05D001944 ORTHO05D002405 1.5e-13 81.3 85 50.6
Lalb_Chr25g0289071 Lupinus albus HOM05D001944 ORTHO05D002405 1.5e-13 81.3 86 47.7
Nitab4.5_0006619g0010 Nicotiana tabacum HOM05D001944 ORTHO05D002405 1.5e-13 81.3 119 39.5
Peaxi162Scf00167g00092 Petunia axillaris HOM05D001944 ORTHO05D002405 1.5e-13 81.3 85 48.2
Thecc.09G343900 Theobroma cacao HOM05D001944 ORTHO05D002405 1.5e-13 81.3 85 50.6
vmacro03215 Vaccinium macrocarpon HOM05D001944 ORTHO05D002405 1.5e-13 81.3 99 49.5
HPP92_003460 Vanilla planifolia HOM05D001944 ORTHO05D002405 1.5e-13 81.3 85 51.8
EL10Ac7g16595 Beta vulgaris HOM05D001944 ORTHO05D002405 1.9e-13 80.9 85 50.6
DCAR_006069 Daucus carota HOM05D001944 ORTHO05D002405 1.9e-13 80.9 103 43.7
Rhsim13G0096400 Rhododendron simsii HOM05D001944 ORTHO05D002405 1.9e-13 80.9 85 50.6
TWI74G0797 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 1.9e-13 80.9 106 45.3
unitig_21.g20905 Utricularia gibba HOM05D001944 ORTHO05D002405 1.9e-13 80.9 85 48.2
COL.COLO4_18304 Corchorus olitorius HOM05D001944 ORTHO05D002405 2.5e-13 80.5 85 51.8
Gohir.A05G105000 Gossypium hirsutum HOM05D001944 ORTHO05D002405 2.5e-13 80.5 85 50.6
Gohir.D05G104800 Gossypium hirsutum HOM05D001944 ORTHO05D002405 2.5e-13 80.5 85 50.6
Gorai.009G108800 Gossypium raimondii HOM05D001944 ORTHO05D002405 2.5e-13 80.5 85 50.6
Nitab4.5_0000181g0180 Nicotiana tabacum HOM05D001944 ORTHO05D002405 2.5e-13 80.5 85 48.2
Prupe.6G104600 Prunus persica HOM05D001944 ORTHO05D002405 2.5e-13 80.5 85 52.9
Oeu036621.1 Olea europaea HOM05D001944 ORTHO05D002405 3.3e-13 80.1 85 48.2
ECA238G1293 Erigeron canadensis HOM05D001944 ORTHO05D002405 4.3e-13 79.7 97 44.3
Sc21g0003900 Simmondsia chinensis HOM05D001944 ORTHO05D002405 4.3e-13 79.7 85 49.4
Cc01_g10870 Coffea canephora HOM05D001944 ORTHO05D002405 5.6e-13 79.3 102 42.2
Phvul.001G177901 Phaseolus vulgaris HOM05D001944 ORTHO05D002405 5.6e-13 79.3 106 43.4
Actinidia24118 Actinidia chinensis HOM05D001944 ORTHO05D002405 7.3e-13 79.0 80 52.5
EL10Ac9g22555 Beta vulgaris HOM05D001944 ORTHO05D002405 7.3e-13 79.0 85 48.2
Ciclev10027663m.g Citrus clementina HOM05D001944 ORTHO05D002405 7.3e-13 79.0 85 51.8
Eucgr.B02518 Eucalyptus grandis HOM05D001944 ORTHO05D002405 7.3e-13 79.0 92 48.9
Psat3g043480 Pisum sativum HOM05D001944 ORTHO05D002405 7.3e-13 79.0 133 42.9
Hund01491 Selenicereus undatus HOM05D001944 ORTHO05D002405 9.5e-13 78.6 85 52.9
Ah.01g003060 Amaranthus hybridus HOM05D001944 ORTHO05D002405 1.2e-12 78.2 83 51.8
DCAR_020831 Daucus carota HOM05D001944 ORTHO05D002405 1.2e-12 78.2 86 47.7
Potri.013G006000 Populus trichocarpa HOM05D001944 ORTHO05D002405 1.2e-12 78.2 85 49.4
SEGI_40050 Sequoiadendron giganteum HOM05D001944 ORTHO05D002405 1.2e-12 78.2 85 45.9
Lsat_1_v5_gn_1_53241 Lactuca sativa HOM05D001944 ORTHO05D002405 1.6e-12 77.8 85 41.2
PSO063G0478 Papaver somniferum HOM05D001944 ORTHO05D002405 1.6e-12 77.8 85 48.2
TPR.G9371 Trifolium pratense HOM05D001944 ORTHO05D002405 1.6e-12 77.8 84 52.4
Zm00001eb379660 Zea mays HOM05D001944 ORTHO05D002405 1.6e-12 77.8 90 42.2
HanXRQChr14g0452741 Helianthus annuus HOM05D001944 ORTHO05D002405 2.1e-12 77.4 99 44.4
arahy.Tifrunner.gnm1.ann1.Q55GHJ Arachis hypogaea HOM05D001944 ORTHO05D002405 2.8e-12 77.0 86 48.8
Glyma.03G181800 Glycine max HOM05D001944 ORTHO05D002405 2.8e-12 77.0 85 49.4
arahy.Tifrunner.gnm1.ann1.BHY38Y Arachis hypogaea HOM05D001944 ORTHO05D002405 3.6e-12 76.6 85 49.4
PGR102G2473 Punica granatum HOM05D001944 ORTHO05D002405 3.6e-12 76.6 85 48.2
Os06g0102800 Oryza sativa ssp. japonica HOM05D001944 ORTHO05D002405 4.7e-12 76.3 90 43.3
VMungo1383G2762 Vigna mungo HOM05D001944 ORTHO05D002405 4.7e-12 76.3 104 42.3
HanXRQChr13g0421871 Helianthus annuus HOM05D001944 ORTHO05D002405 6.2e-12 75.9 85 45.9
SEGI_24058 Sequoiadendron giganteum HOM05D001944 ORTHO05D002405 8.0e-12 75.5 85 45.9
SEGI_40731 Sequoiadendron giganteum HOM05D001944 ORTHO05D002405 8.0e-12 75.5 85 45.9
DCAR_022760 Daucus carota HOM05D001944 ORTHO05D002405 1.0e-11 75.1 136 34.6
ATR0048G049 Amborella trichopoda HOM05D001944 ORTHO05D002405 1.4e-11 74.7 85 47.1
CSS0012038 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D002405 1.8e-11 74.3 85 48.2
Atru.chr8.1406 Acer truncatum HOM05D001944 ORTHO05D002405 3.1e-11 73.6 85 49.4
Aa31LG9G1980 Aethionema arabicum HOM05D001944 ORTHO05D002405 4.0e-11 73.2 85 47.1
AUR62029226 Chenopodium quinoa HOM05D001944 ORTHO05D002405 5.2e-11 72.8 85 48.2
Lsat_1_v5_gn_1_53160 Lactuca sativa HOM05D001944 ORTHO05D002405 5.2e-11 72.8 60 53.3
Medtr7g101465 Medicago truncatula HOM05D001944 ORTHO05D002405 6.8e-11 72.4 84 47.6
Dinv01067 Davidia involucrata HOM05D001944 ORTHO05D002405 1.2e-10 71.6 88 44.3
PSO732G0413 Papaver somniferum HOM05D001944 ORTHO05D002405 1.2e-10 71.6 86 44.2
PSO339G2779 Papaver somniferum HOM05D001944 ORTHO05D002405 2.0e-10 70.9 85 43.5
PSO017G6475 Papaver somniferum HOM05D001944 ORTHO05D002405 2.6e-10 70.5 85 43.5
Nn2g11517 Nelumbo nucifera HOM05D001944 ORTHO05D002405 3.4e-10 70.1 144 31.9
PSO384G1822 Papaver somniferum HOM05D001944 ORTHO05D002405 4.4e-10 69.7 85 43.5
PSO675G7498 Papaver somniferum HOM05D001944 ORTHO05D002405 4.4e-10 69.7 85 43.5
HanXRQChr01g0027491 Helianthus annuus HOM05D001944 ORTHO05D002405 7.5e-10 68.9 85 42.4
THA.LOC104826377 Tarenaya hassleriana HOM05D001944 ORTHO05D002405 9.8e-10 68.6 158 32.3
PSO732G0719 Papaver somniferum HOM05D001944 ORTHO05D002405 2.9e-09 67.0 85 42.4
CSS0041121 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D017225 3.7e-09 66.6 100 41.0
ECA248G2414 Erigeron canadensis HOM05D001944 ORTHO05D002405 3.7e-09 66.6 85 47.1
HanXRQChr01g0019301 Helianthus annuus HOM05D001944 ORTHO05D002405 3.7e-09 66.6 85 44.7
PSO675G2075 Papaver somniferum HOM05D001944 ORTHO05D002405 3.7e-09 66.6 86 39.5
Psat0s2087g0160 Pisum sativum HOM05D001944 ORTHO05D002405 3.7e-09 66.6 80 46.2
QL93p0107_0420 Quercus lobata HOM05D024689 ORTHO05D002405 4.9e-09 66.2 76 43.4
vmacro20024 Vaccinium macrocarpon HOM05D001944 ORTHO05D017225 4.9e-09 66.2 82 45.1
C08p50200 Brassica napus HOM05D001944 ORTHO05D002405 6.4e-09 65.9 85 45.9
BolC8t52549H Brassica oleracea HOM05D001944 ORTHO05D002405 6.4e-09 65.9 85 45.9
CARHR007860 Cardamine hirsuta HOM05D001944 ORTHO05D002405 6.4e-09 65.9 76 48.7
CDE02G2939 Ceratophyllum demersum HOM05D001944 ORTHO05D002405 6.4e-09 65.9 87 44.8
ECA248G3660 Erigeron canadensis HOM05D001944 ORTHO05D002405 6.4e-09 65.9 85 43.5
Sp1g06700 Schrenkiella parvula HOM05D001944 ORTHO05D002405 6.4e-09 65.9 85 47.1
PSO732G0800 Papaver somniferum HOM05D001944 ORTHO05D002405 8.3e-09 65.5 86 38.4
A09p66040 Brassica napus HOM05D001944 ORTHO05D002405 1.1e-08 65.1 85 45.9
BraA09t41943Z Brassica rapa HOM05D001944 ORTHO05D002405 1.1e-08 65.1 85 45.9
Thhalv10006530m.g Eutrema salsugineum HOM05D001944 ORTHO05D002405 1.1e-08 65.1 78 48.7
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 1.4e-08 64.7 80 45.0
QL93p0356_0080 Quercus lobata HOM05D001944 ORTHO05D002405 1.4e-08 64.7 76 42.1
CANSAT54G1673 Cannabis sativa HOM05D001944 ORTHO05D002405 2.4e-08 63.9 73 46.6
BcaB02g06690 Brassica carinata HOM05D000550 ORTHO05D002405 3.2e-08 63.5 85 45.9
ECA248G2804 Erigeron canadensis HOM05D001944 ORTHO05D002405 3.2e-08 63.5 90 41.1
A06p05120 Brassica napus HOM05D001944 ORTHO05D002405 4.1e-08 63.2 85 45.9
C05p06080 Brassica napus HOM05D001944 ORTHO05D002405 4.1e-08 63.2 85 45.9
BraA06t23719Z Brassica rapa HOM05D001944 ORTHO05D002405 4.1e-08 63.2 85 45.9
COL.COLO4_26992 Corchorus olitorius HOM05D001944 ORTHO05D002405 4.1e-08 63.2 56 51.8
THA.LOC104800593 Tarenaya hassleriana HOM05D001944 ORTHO05D002405 4.1e-08 63.2 76 47.4
HanXRQChr01g0019291 Helianthus annuus HOM05D001944 ORTHO05D002405 7.0e-08 62.4 82 43.9
BcaC05g24721 Brassica carinata HOM05D001944 ORTHO05D002405 9.2e-08 62.0 85 45.9
AL1G18410 Arabidopsis lyrata HOM05D001944 ORTHO05D002405 1.2e-07 61.6 96 41.7
BolC5t29368H Brassica oleracea HOM05D001944 ORTHO05D002405 1.2e-07 61.6 85 44.7
HanXRQChr13g0405021 Helianthus annuus HOM05D001944 ORTHO05D002405 1.6e-07 61.2 401 22.2
CSS0009803 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D017225 3.5e-07 60.1 100 38.0
AT1G08060 Arabidopsis thaliana HOM05D001944 ORTHO05D002405 6.0e-07 59.3 85 42.4
SMO118G0150 Selaginella moellendorffii HOM05D001944 ORTHO05D002405 6.0e-07 59.3 83 34.9
Lsat_1_v5_gn_1_63980 Lactuca sativa HOM05D001944 ORTHO05D002405 2.3e-06 57.4 87 42.5
Carub.0001s0741 Capsella rubella HOM05D001944 ORTHO05D002405 3.9e-06 56.6 85 42.4


User provided reference genes

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