Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G362.38 Capsicum annuum HOM05D002965 ORTHO05D010994 3.9e-69 264.6 129 100.0
Sopen05g012840 Solanum pennellii HOM05D002965 ORTHO05D010183 1.7e-48 196.1 124 79.8
Peaxi162Scf00348g00058 Petunia axillaris HOM05D002965 ORTHO05D010994 4.7e-38 161.4 104 76.9
Solyc00g500351.1 Solanum lycopersicum HOM05D002965 ORTHO05D011254 2.8e-35 152.1 198 48.0
PGSC0003DMG400010573 Solanum tuberosum HOM05D002965 ORTHO05D010536 2.0e-28 129.4 77 84.4
Solyc00g500226.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 9.8e-28 127.1 77 83.1
Solyc00g500262.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 9.8e-28 127.1 77 83.1
Solyc06g074585.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 4.9e-27 124.8 77 81.8
Sopen11g024950 Solanum pennellii HOM05D000004 ORTHO05D000002 7.0e-26 120.9 81 77.8
Solyc11g045430.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 2.7e-25 119.0 81 77.8
Sopen11g012750 Solanum pennellii HOM05D002660 ORTHO05D003902 1.0e-24 117.1 75 80.0
Solyc00g500114.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 2.9e-24 115.5 77 77.9
Gohir.D06G053851 Gossypium hirsutum HOM05D002965 ORTHO05D010536 1.7e-16 89.7 72 58.3
CAN.G85.16 Capsicum annuum HOM05D001560 ORTHO05D010994 3.0e-16 89.0 67 64.2
Potri.007G062262 Populus trichocarpa HOM05D002965 ORTHO05D010536 3.9e-16 88.6 72 56.9
SabraMtG0009900 Salix brachista HOM05D002965 ORTHO05D010536 3.9e-16 88.6 72 56.9
BNapus_Darmor_BZH_scaffold_234p00050 Brassica napus HOM05D002965 ORTHO05D010536 6.6e-16 87.8 75 56.0
BolSC28t60357H Brassica oleracea HOM05D002965 ORTHO05D010536 6.6e-16 87.8 75 56.0
BraSC48t46254Z Brassica rapa HOM05D002965 ORTHO05D010536 6.6e-16 87.8 75 56.0
SHI37136 Sapria himalayana HOM05D001560 ORTHO05D003613 6.6e-16 87.8 52 78.8
SHI37900 Sapria himalayana HOM05D001560 ORTHO05D003613 6.6e-16 87.8 52 78.8
Sed0019140 Sechium edule HOM05D009805 ORTHO05D010994 3.3e-15 85.5 62 71.0
SHI34605 Sapria himalayana HOM05D001560 ORTHO05D003613 4.3e-15 85.1 52 76.9
Nitab4.5_0000844g0180 Nicotiana tabacum HOM05D008793 ORTHO05D010994 5.6e-15 84.7 59 66.1
Eucgr.I01860 Eucalyptus grandis HOM05D002965 ORTHO05D010536 7.3e-15 84.3 72 55.6
RhsimMtG0005600 Rhododendron simsii HOM05D009805 ORTHO05D010994 7.3e-15 84.3 53 75.5
Lj6A7T8 Lonicera japonica HOM05D002965 ORTHO05D010536 1.2e-14 83.6 75 52.0
SHI50439 Sapria himalayana HOM05D001560 ORTHO05D010994 2.1e-14 82.8 50 78.0
Aqoxy3G01134 Aquilegia oxysepala HOM05D002965 ORTHO05D010536 2.8e-14 82.4 74 51.4
AL3G44420 Arabidopsis lyrata HOM05D002965 ORTHO05D010536 2.8e-14 82.4 72 54.2
AT2G07674 Arabidopsis thaliana HOM05D002965 ORTHO05D010536 2.8e-14 82.4 72 54.2
ATMG01010 Arabidopsis thaliana HOM05D002965 ORTHO05D010536 2.8e-14 82.4 72 54.2
arahy.Tifrunner.gnm1.ann1.IE22H8 Arachis hypogaea HOM05D009805 ORTHO05D010994 2.8e-14 82.4 61 68.9
arahy.Tifrunner.gnm1.ann1.KWS21K Arachis hypogaea HOM05D009805 ORTHO05D010994 2.8e-14 82.4 61 68.9
SHI35290 Sapria himalayana HOM05D000743 ORTHO05D000580 2.8e-14 82.4 52 76.9
Nn1g10044 Nelumbo nucifera HOM05D009805 ORTHO05D010994 3.6e-14 82.0 51 78.4
SHI44984 Sapria himalayana HOM05D001560 ORTHO05D003613 3.6e-14 82.0 51 78.4
SHI35327 Sapria himalayana HOM05D001560 ORTHO05D003613 4.7e-14 81.6 52 73.1
Hund12882 Selenicereus undatus HOM05D009805 ORTHO05D010994 4.7e-14 81.6 59 66.1
Hund12885 Selenicereus undatus HOM05D009805 ORTHO05D010994 4.7e-14 81.6 64 64.1
Hund27585 Selenicereus undatus HOM05D009805 ORTHO05D010994 4.7e-14 81.6 64 64.1
Hund27815 Selenicereus undatus HOM05D009805 ORTHO05D010994 4.7e-14 81.6 64 64.1
Hund27901 Selenicereus undatus HOM05D009805 ORTHO05D010994 4.7e-14 81.6 64 64.1
Hund28070 Selenicereus undatus HOM05D009805 ORTHO05D010994 4.7e-14 81.6 64 64.1
Hund28081 Selenicereus undatus HOM05D009805 ORTHO05D010994 4.7e-14 81.6 64 64.1
Hund28865 Selenicereus undatus HOM05D009805 ORTHO05D010994 4.7e-14 81.6 64 64.1
Hund28884 Selenicereus undatus HOM05D009805 ORTHO05D010994 4.7e-14 81.6 64 64.1
Hund29204 Selenicereus undatus HOM05D009805 ORTHO05D010994 4.7e-14 81.6 64 64.1
Hund29342 Selenicereus undatus HOM05D009805 ORTHO05D010994 4.7e-14 81.6 64 64.1
arahy.Tifrunner.gnm1.ann1.WM32N3 Arachis hypogaea HOM05D009805 ORTHO05D010994 8.0e-14 80.9 50 78.0
Ca_28560_v3 Cicer arietinum L. HOM05D002965 ORTHO05D010536 8.0e-14 80.9 137 38.0
Peaxi162Scf00827g00511 Petunia axillaris HOM05D001560 ORTHO05D010994 1.1e-13 80.5 50 74.0
CAN.G745.34 Capsicum annuum HOM05D009805 ORTHO05D010994 1.4e-13 80.1 51 74.5
Hma1.2p1_0290F.1_g114710 Hydrangea macrophylla HOM05D002965 ORTHO05D010536 1.4e-13 80.1 75 56.0
Hma1.2p1_0290F.1_g114715 Hydrangea macrophylla HOM05D002965 ORTHO05D010536 1.4e-13 80.1 75 56.0
Nitab4.5_0000886g0220 Nicotiana tabacum HOM05D008793 ORTHO05D010994 1.4e-13 80.1 64 60.9
Cpa.g.sc89.21 Carica papaya HOM05D009805 ORTHO05D010994 1.8e-13 79.7 50 76.0
CARHR283260 Cardamine hirsuta HOM05D002965 ORTHO05D010536 3.1e-13 79.0 72 52.8
SHI34995 Sapria himalayana HOM05D001560 ORTHO05D010994 3.1e-13 79.0 51 74.5
SHI35482 Sapria himalayana HOM05D001560 ORTHO05D003613 3.1e-13 79.0 52 75.0
SHI36372 Sapria himalayana HOM05D001560 ORTHO05D003613 3.1e-13 79.0 50 78.0
SalBow1G3342 Salvia bowleyana HOM05D002965 ORTHO05D010536 5.2e-13 78.2 63 58.7
SHI35000 Sapria himalayana HOM05D001560 ORTHO05D003613 5.2e-13 78.2 51 76.5
SHI36773 Sapria himalayana HOM05D001560 ORTHO05D010994 6.8e-13 77.8 52 71.2
SHI36784 Sapria himalayana HOM05D001560 ORTHO05D010994 6.8e-13 77.8 52 71.2
SHI38843 Sapria himalayana HOM05D001560 ORTHO05D003613 8.9e-13 77.4 52 73.1
SHI45575 Sapria himalayana HOM05D001560 ORTHO05D003613 8.9e-13 77.4 50 76.0
SHI50746 Sapria himalayana HOM05D001560 ORTHO05D003613 8.9e-13 77.4 50 76.0
SHI36381 Sapria himalayana HOM05D001560 ORTHO05D003613 1.5e-12 76.6 52 73.1
Glyma.17G186200 Glycine max HOM05D002965 ORTHO05D010536 2.0e-12 76.3 75 50.7
SHI38561 Sapria himalayana HOM05D001560 ORTHO05D003613 2.6e-12 75.9 52 71.2
SHI38584 Sapria himalayana HOM05D001560 ORTHO05D003613 2.6e-12 75.9 52 71.2
Nitab4.5_0000081g0010 Nicotiana tabacum HOM05D001560 ORTHO05D010994 3.4e-12 75.5 45 80.0
PGR028G0005 Punica granatum HOM05D002965 ORTHO05D010536 3.4e-12 75.5 73 50.7
PGR069G0002 Punica granatum HOM05D002965 ORTHO05D010536 3.4e-12 75.5 73 50.7
PGR069G0012 Punica granatum HOM05D002965 ORTHO05D010536 3.4e-12 75.5 73 50.7
PGR069G0018 Punica granatum HOM05D002965 ORTHO05D010536 3.4e-12 75.5 73 50.7
PGR071G0002 Punica granatum HOM05D002965 ORTHO05D010536 3.4e-12 75.5 73 50.7
SHI37067 Sapria himalayana HOM05D001560 ORTHO05D010994 3.4e-12 75.5 52 71.2
SHI39990 Sapria himalayana HOM05D001560 ORTHO05D010994 3.4e-12 75.5 51 72.5
Oeu051780.2 Olea europaea HOM05D001560 ORTHO05D003613 5.8e-12 74.7 45 77.8
SalBow1G3143 Salvia bowleyana HOM05D009805 ORTHO05D010994 5.8e-12 74.7 45 77.8
SGA_v2.0_scaffold255G45499 Striga asiatica HOM05D001560 ORTHO05D010994 5.8e-12 74.7 45 77.8
EL10Ac5g12181 Beta vulgaris HOM05D002965 ORTHO05D010536 7.5e-12 74.3 72 51.4
SHI40317 Sapria himalayana HOM05D001560 ORTHO05D003613 9.8e-12 73.9 51 72.5
Ca_22176_v3 Cicer arietinum L. HOM05D001560 ORTHO05D003613 1.3e-11 73.6 44 79.5
COL.COLO4_04089 Corchorus olitorius HOM05D001560 ORTHO05D003613 2.2e-11 72.8 48 72.9
SalBow1G2595 Salvia bowleyana HOM05D009805 ORTHO05D010994 2.2e-11 72.8 44 77.3
VMungo0251G1451 Vigna mungo HOM05D002965 ORTHO05D010536 2.9e-11 72.4 64 57.8
SabraMtG0009500 Salix brachista HOM05D001560 ORTHO05D010994 3.7e-11 72.0 45 75.6
SHI35186 Sapria himalayana HOM05D000743 ORTHO05D000580 4.9e-11 71.6 52 67.3
TPR.G39706 Trifolium pratense HOM05D001560 ORTHO05D003613 6.4e-11 71.2 45 75.6
ECA003G0005 Erigeron canadensis HOM05D002965 ORTHO05D000580 8.3e-11 70.9 72 50.0
ECA039G0005 Erigeron canadensis HOM05D002965 ORTHO05D010536 8.3e-11 70.9 72 50.0
Thhalv10023135m.g Eutrema salsugineum HOM05D002965 ORTHO05D010536 8.3e-11 70.9 52 61.5
HanXRQMTg0579151 Helianthus annuus HOM05D002965 ORTHO05D010536 8.3e-11 70.9 77 42.9
PGR028G0001 Punica granatum HOM05D002864 ORTHO05D007972 8.3e-11 70.9 75 49.3
SHI35001 Sapria himalayana HOM05D001560 ORTHO05D010994 8.3e-11 70.9 52 67.3
HanXRQChr10g0297161 Helianthus annuus HOM05D002965 ORTHO05D010536 1.1e-10 70.5 72 44.4
SHI38463 Sapria himalayana HOM05D001560 ORTHO05D003613 1.9e-10 69.7 51 68.6
HanXRQChr07g0188971 Helianthus annuus HOM05D002965 ORTHO05D010536 4.1e-10 68.6 68 48.5
Nitab4.5_0012260g0050 Nicotiana tabacum HOM05D008793 ORTHO05D010994 7.0e-10 67.8 51 68.6
SHI36137 Sapria himalayana HOM05D000743 ORTHO05D000580 7.0e-10 67.8 48 68.8
Aa31csc464G20 Aethionema arabicum HOM05D000743 ORTHO05D000580 9.2e-10 67.4 73 50.7
Solyc05g018800.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 1.2e-09 67.0 47 72.3
HanXRQChr02g0035251 Helianthus annuus HOM05D002965 ORTHO05D010536 1.6e-09 66.6 57 50.9
SHI34615 Sapria himalayana HOM05D000743 ORTHO05D000580 3.5e-09 65.5 53 64.2
BcaC05g26887 Brassica carinata HOM05D002965 ORTHO05D010536 6.0e-09 64.7 56 53.6
Psat0s4951g0200 Pisum sativum HOM05D002965 ORTHO05D010812 1.0e-08 63.9 49 61.2
Psat0s7112g0120 Pisum sativum HOM05D002965 ORTHO05D010536 1.0e-08 63.9 49 61.2
Solyc10g018957.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 1.0e-08 63.9 51 64.7
Nitab4.5_0002493g0010 Nicotiana tabacum HOM05D002965 ORTHO05D010536 3.0e-08 62.4 54 57.4
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 8.6e-08 60.8 43 65.1
arahy.Tifrunner.gnm1.ann1.8LYJ6L Arachis hypogaea HOM05D004291 ORTHO05D005620 1.9e-07 59.7 59 50.8
arahy.Tifrunner.gnm1.ann1.LH5L6M Arachis hypogaea HOM05D002965 ORTHO05D010536 1.9e-07 59.7 59 50.8
arahy.Tifrunner.gnm1.ann1.Y9PUBE Arachis hypogaea HOM05D004291 ORTHO05D005620 1.9e-07 59.7 59 50.8
TPR.G28262 Trifolium pratense HOM05D002965 ORTHO05D010536 2.5e-07 59.3 54 51.9
Gorai.013G137600 Gossypium raimondii HOM05D002965 ORTHO05D010536 7.3e-07 57.8 43 62.8
SHI39121 Sapria himalayana HOM05D000743 ORTHO05D000580 1.2e-06 57.0 48 68.8
SHI44092 Sapria himalayana HOM05D001560 ORTHO05D010994 1.2e-06 57.0 46 67.4
SHI51797 Sapria himalayana HOM05D001560 ORTHO05D003613 1.2e-06 57.0 46 67.4
SHI42286 Sapria himalayana HOM05D000743 ORTHO05D004675 1.6e-06 56.6 50 68.0
Aa31csc1081G40 Aethionema arabicum HOM05D002965 ORTHO05D010536 2.1e-06 56.2 56 44.6
Solyc00g025300.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 2.1e-06 56.2 46 56.5
arahy.Tifrunner.gnm1.ann1.QPLA3G Arachis hypogaea HOM05D005210 ORTHO05D010080 3.6e-06 55.5 41 63.4
SHI38900 Sapria himalayana HOM05D000743 ORTHO05D000580 6.2e-06 54.7 48 66.7
SHI36572 Sapria himalayana HOM05D001560 ORTHO05D010994 8.1e-06 54.3 39 66.7


User provided reference genes

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