Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G358.88 Capsicum annuum HOM05D000007 ORTHO05D000017 8.6e-63 243.4 119 100.0
CAN.G500.44 Capsicum annuum HOM05D000007 ORTHO05D000017 5.3e-44 181.0 90 96.7
Nitab4.5_0000941g0220 Nicotiana tabacum HOM05D000007 ORTHO05D000017 1.8e-36 156.0 89 83.1
Nitab4.5_0002398g0030 Nicotiana tabacum HOM05D000007 ORTHO05D000017 3.1e-36 155.2 99 77.8
PGSC0003DMG400029632 Solanum tuberosum HOM05D000007 ORTHO05D000017 7.9e-32 140.6 90 76.7
Solyc09g091690.1 Solanum lycopersicum HOM05D000007 ORTHO05D000017 2.3e-31 139.0 90 75.6
Sopen09g034590 Solanum pennellii HOM05D000007 ORTHO05D000017 6.7e-31 137.5 90 74.4
Peaxi162Scf00047g00088 Petunia axillaris HOM05D000007 ORTHO05D000017 2.1e-29 132.5 89 73.0
CAN.G1096.1 Capsicum annuum HOM05D000007 ORTHO05D000017 5.5e-25 117.9 87 64.4
Nitab4.5_0000635g0010 Nicotiana tabacum HOM05D000007 ORTHO05D000017 1.3e-23 113.2 87 58.6
Sopen01g028680 Solanum pennellii HOM05D000007 ORTHO05D000017 1.3e-23 113.2 88 63.6
Solyc01g067010.3 Solanum lycopersicum HOM05D000007 ORTHO05D000017 1.8e-23 112.8 88 63.6
Solyc10g008450.2 Solanum lycopersicum HOM05D000007 ORTHO05D000017 8.7e-23 110.5 88 60.2
PGSC0003DMG400003428 Solanum tuberosum HOM05D000007 ORTHO05D000017 8.7e-23 110.5 88 62.5
PGSC0003DMG400003427 Solanum tuberosum HOM05D000007 ORTHO05D000017 1.9e-22 109.4 87 63.2
Nitab4.5_0002398g0010 Nicotiana tabacum HOM05D000007 ORTHO05D000017 5.7e-22 107.8 86 59.3
Nitab4.5_0000191g0070 Nicotiana tabacum HOM05D000007 ORTHO05D000017 2.2e-21 105.9 87 60.9
Sopen10g004270 Solanum pennellii HOM05D000007 ORTHO05D000017 8.2e-21 104.0 88 56.8
CAN.G1655.4 Capsicum annuum HOM05D000007 ORTHO05D000017 1.4e-20 103.2 87 55.2
CAN.G1655.5 Capsicum annuum HOM05D000007 ORTHO05D000017 1.5e-19 99.8 87 52.9
Nitab4.5_0000960g0220 Nicotiana tabacum HOM05D000007 ORTHO05D000017 1.6e-16 89.7 103 43.7
Nitab4.5_0005610g0010 Nicotiana tabacum HOM05D000007 ORTHO05D000017 1.6e-16 89.7 70 58.6
Peaxi162Scf00526g00073 Petunia axillaris HOM05D000007 ORTHO05D000017 2.6e-11 72.4 85 47.1
DCAR_026597 Daucus carota HOM05D000007 ORTHO05D000017 5.9e-11 71.2 89 47.2
CAN.G2152.2 Capsicum annuum HOM05D000007 ORTHO05D000017 1.0e-10 70.5 90 41.1
Sopen09g034190 Solanum pennellii HOM05D000007 ORTHO05D000017 1.7e-10 69.7 87 43.7
CAN.G765.9 Capsicum annuum HOM05D000007 ORTHO05D000017 2.9e-10 68.9 90 40.0
ECA233G3278 Erigeron canadensis HOM05D006138 ORTHO05D007778 3.8e-10 68.6 87 43.7
MSTRG.24628 Avicennia marina HOM05D000007 ORTHO05D000017 1.4e-09 66.6 89 43.8
Nitab4.5_0006812g0060 Nicotiana tabacum HOM05D000007 ORTHO05D000017 1.9e-09 66.2 88 45.5
PGSC0003DMG400011589 Solanum tuberosum HOM05D000007 ORTHO05D000017 1.9e-09 66.2 87 41.4
PGSC0003DMG403021681 Solanum tuberosum HOM05D000007 ORTHO05D000017 1.9e-09 66.2 46 63.0
Cc03_g07530 Coffea canephora HOM05D000007 ORTHO05D000017 2.5e-09 65.9 89 38.2
Peaxi162Scf00047g00814 Petunia axillaris HOM05D000007 ORTHO05D000017 7.2e-09 64.3 87 41.4
PGSC0003DMG400013111 Solanum tuberosum HOM05D000007 ORTHO05D000017 7.2e-09 64.3 96 39.6
Lj3P550T16 Lonicera japonica HOM05D000007 ORTHO05D000017 9.4e-09 63.9 89 39.3
Lj3P552T19 Lonicera japonica HOM05D000007 ORTHO05D000017 9.4e-09 63.9 89 39.3
Solyc09g091220.3 Solanum lycopersicum HOM05D000007 ORTHO05D000017 9.4e-09 63.9 88 43.2
CAN.G1588.8 Capsicum annuum HOM05D000007 ORTHO05D000017 1.2e-08 63.5 85 45.9
Lj3P553T4 Lonicera japonica HOM05D000007 ORTHO05D000017 1.6e-08 63.2 89 38.2
Nitab4.5_0002182g0070 Nicotiana tabacum HOM05D000007 ORTHO05D000017 1.6e-08 63.2 86 44.2
Oeu022123.1 Olea europaea HOM05D000007 ORTHO05D000017 1.6e-08 63.2 87 43.7
Dinv38256 Davidia involucrata HOM05D000007 ORTHO05D000017 2.1e-08 62.8 85 38.8
SGA_v2.0_scaffold4G02230 Striga asiatica HOM05D000007 ORTHO05D000017 7.9e-08 60.8 97 37.1
Actinidia26832 Actinidia chinensis HOM05D000007 ORTHO05D000017 1.0e-07 60.5 83 42.2
Lsat_1_v5_gn_6_61500 Lactuca sativa HOM05D000007 ORTHO05D000017 1.4e-07 60.1 87 42.5
Lj3P550T42 Lonicera japonica HOM05D000007 ORTHO05D000017 1.4e-07 60.1 91 37.4
Solyc09g083230.1 Solanum lycopersicum HOM05D000007 ORTHO05D000017 3.0e-07 58.9 86 38.4
Sopen09g032150 Solanum pennellii HOM05D000007 ORTHO05D000017 3.0e-07 58.9 86 38.4
Sopen09g032160 Solanum pennellii HOM05D000007 ORTHO05D000017 3.0e-07 58.9 86 38.4
Gohir.D10G159700 Gossypium hirsutum HOM05D000007 ORTHO05D000017 3.9e-07 58.5 86 39.5
Gorai.011G179400 Gossypium raimondii HOM05D000007 ORTHO05D000017 3.9e-07 58.5 86 39.5
Manes.15G021000 Manihot esculenta HOM05D000007 ORTHO05D000017 3.9e-07 58.5 86 37.2
Nitab4.5_0001433g0010 Nicotiana tabacum HOM05D000007 ORTHO05D000017 3.9e-07 58.5 87 39.1
RcHm_v2.0_Chr2g0154651 Rosa chinensis HOM05D000007 ORTHO05D015890 3.9e-07 58.5 90 36.7
CAN.G500.20 Capsicum annuum HOM05D000007 ORTHO05D000017 5.1e-07 58.2 91 36.3
Medtr1g113900 Medicago truncatula HOM05D000007 ORTHO05D000017 5.1e-07 58.2 91 39.6
Nitab4.5_0000122g0040 Nicotiana tabacum HOM05D000007 ORTHO05D000017 5.1e-07 58.2 87 37.9
SalBow4G2143 Salvia bowleyana HOM05D000007 ORTHO05D000017 5.1e-07 58.2 89 40.4
PGSC0003DMG400022664 Solanum tuberosum HOM05D000007 ORTHO05D000017 5.1e-07 58.2 94 38.3
PGSC0003DMG400031292 Solanum tuberosum HOM05D000007 ORTHO05D000017 5.1e-07 58.2 86 36.0
Ciclev10030112m.g Citrus clementina HOM05D000007 ORTHO05D000017 6.7e-07 57.8 95 34.7
Glyma.13G211000 Glycine max HOM05D000007 ORTHO05D000017 6.7e-07 57.8 89 39.3
Lsat_1_v5_gn_6_61400 Lactuca sativa HOM05D000007 ORTHO05D000017 6.7e-07 57.8 89 38.2
Peaxi162Scf00421g00021 Petunia axillaris HOM05D000007 ORTHO05D000017 6.7e-07 57.8 85 37.6
BcaC01g04329 Brassica carinata HOM05D000007 ORTHO05D000017 8.8e-07 57.4 87 40.2
BolC3t16484H Brassica oleracea HOM05D000007 ORTHO05D000017 8.8e-07 57.4 87 40.2
Hma1.2p1_0187F.1_g081920 Hydrangea macrophylla HOM05D000007 ORTHO05D000017 8.8e-07 57.4 89 39.3
Peaxi162Scf00952g00311 Petunia axillaris HOM05D000007 ORTHO05D018881 8.8e-07 57.4 83 39.8
FAN16G2717 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.1e-06 57.0 95 33.7
Lj1g0002866 Lotus japonicus HOM05D000007 ORTHO05D000017 1.1e-06 57.0 86 37.2
Nitab4.5_0002171g0100 Nicotiana tabacum HOM05D000007 ORTHO05D000017 1.1e-06 57.0 86 34.9
RcHm_v2.0_Chr2g0154591 Rosa chinensis HOM05D000007 ORTHO05D000017 1.1e-06 57.0 95 37.9
VMungo0540G1914 Vigna mungo HOM05D000007 ORTHO05D000017 1.1e-06 57.0 87 40.2
COL.COLO4_13989 Corchorus olitorius HOM05D000007 ORTHO05D000017 1.5e-06 56.6 85 38.8
Manes.15G021100 Manihot esculenta HOM05D000007 ORTHO05D000017 1.5e-06 56.6 87 36.8
RcHm_v2.0_Chr2g0154671 Rosa chinensis HOM05D000007 ORTHO05D000017 1.5e-06 56.6 90 37.8
Solyc12g098170.1 Solanum lycopersicum HOM05D000007 ORTHO05D000017 1.5e-06 56.6 87 33.3
Atru.chr1.119 Acer truncatum HOM05D000007 ORTHO05D000017 2.0e-06 56.2 87 35.6
Atru.chr1.2429 Acer truncatum HOM05D000007 ORTHO05D000017 2.0e-06 56.2 92 38.0
Lj3C538T6 Lonicera japonica HOM05D000007 ORTHO05D018014 2.0e-06 56.2 89 33.7
Lj6g0009082 Lotus japonicus HOM05D000007 ORTHO05D000017 2.0e-06 56.2 85 35.3
Lj6g0019357 Lotus japonicus HOM05D000007 ORTHO05D000017 2.0e-06 56.2 87 37.9
Sopen03g006940 Solanum pennellii HOM05D000007 ORTHO05D000017 2.0e-06 56.2 85 34.1
THA.LOC104818824 Tarenaya hassleriana HOM05D000007 ORTHO05D000017 2.0e-06 56.2 85 37.6
DCAR_024490 Daucus carota HOM05D006025 ORTHO05D008547 2.6e-06 55.8 88 36.4
ECA240G1350 Erigeron canadensis HOM05D000007 ORTHO05D000017 2.6e-06 55.8 87 36.8
Glyma.15G101600 Glycine max HOM05D000007 ORTHO05D000017 2.6e-06 55.8 89 38.2
Lju225C3T2 Lonicera japonica HOM05D000007 ORTHO05D000039 2.6e-06 55.8 111 32.4
Lj6g0008383 Lotus japonicus HOM05D000007 ORTHO05D000017 2.6e-06 55.8 88 31.8
Sopen10g023390 Solanum pennellii HOM05D000007 ORTHO05D000017 2.6e-06 55.8 86 40.7
SGA_v2.0_scaffold49G18160 Striga asiatica HOM05D000007 ORTHO05D000017 2.6e-06 55.8 96 35.4
FAN10G4360 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.3e-06 55.5 100 36.0
Nitab4.5_0004974g0060 Nicotiana tabacum HOM05D000007 ORTHO05D000017 3.3e-06 55.5 86 37.2
Oeu016715.1 Olea europaea HOM05D000007 ORTHO05D000017 3.3e-06 55.5 95 42.1
Peaxi162Scf00183g00420 Petunia axillaris HOM05D000007 ORTHO05D000017 3.3e-06 55.5 86 37.2
Peaxi162Scf00421g00006 Petunia axillaris HOM05D000007 ORTHO05D000017 3.3e-06 55.5 85 32.9
RcHm_v2.0_Chr2g0154711 Rosa chinensis HOM05D000007 ORTHO05D000017 3.3e-06 55.5 92 35.9
Solyc10g052710.1 Solanum lycopersicum HOM05D000007 ORTHO05D000017 3.3e-06 55.5 86 40.7
Sopen01g028740 Solanum pennellii HOM05D000007 ORTHO05D000017 3.3e-06 55.5 90 38.9
THA.LOC104818818 Tarenaya hassleriana HOM05D000007 ORTHO05D000017 3.3e-06 55.5 88 37.5
C03p42040 Brassica napus HOM05D000007 ORTHO05D000017 4.4e-06 55.1 87 39.1
Ca_00599_v3 Cicer arietinum L. HOM05D000007 ORTHO05D000017 4.4e-06 55.1 87 37.9
Cc00_g27470 Coffea canephora HOM05D000007 ORTHO05D010342 4.4e-06 55.1 88 35.2
Dinv11913 Davidia involucrata HOM05D000007 ORTHO05D000017 4.4e-06 55.1 94 35.1
FvH4_3g03940 Fragaria vesca HOM05D000007 ORTHO05D000017 4.4e-06 55.1 95 33.7
Lj3A548T46 Lonicera japonica HOM05D000007 ORTHO05D018014 4.4e-06 55.1 77 36.4
Lalb_Chr15g0087251 Lupinus albus HOM05D000007 ORTHO05D000017 4.4e-06 55.1 87 41.4
AL7G42560 Arabidopsis lyrata HOM05D000007 ORTHO05D000017 5.7e-06 54.7 86 36.0
Lj6g0010833 Lotus japonicus HOM05D000007 ORTHO05D000017 5.7e-06 54.7 86 36.0
Nitab4.5_0000798g0050 Nicotiana tabacum HOM05D000007 ORTHO05D000017 5.7e-06 54.7 84 36.9
Oeu009401.1 Olea europaea HOM05D000007 ORTHO05D000017 5.7e-06 54.7 100 39.0
Phvul.006G157000 Phaseolus vulgaris HOM05D000007 ORTHO05D000017 5.7e-06 54.7 87 39.1
Aa31LG5G16750 Aethionema arabicum HOM05D000007 ORTHO05D000017 7.4e-06 54.3 87 35.6
A03p34560 Brassica napus HOM05D000007 ORTHO05D000017 7.4e-06 54.3 87 35.6
Cpa.g.sc75.109 Carica papaya HOM05D000007 ORTHO05D000017 7.4e-06 54.3 88 35.2
Medtr2g021190 Medicago truncatula HOM05D000007 ORTHO05D000017 7.4e-06 54.3 87 36.8
Aqoxy5G04199 Aquilegia oxysepala HOM05D000007 ORTHO05D000017 9.7e-06 53.9 94 36.2
Migut.H01606 Erythranthe guttata HOM05D000007 ORTHO05D000017 9.7e-06 53.9 85 40.0
FvH4_7g25410 Fragaria vesca HOM05D000007 ORTHO05D000017 9.7e-06 53.9 105 31.4
Lalb_Chr20g0118311 Lupinus albus HOM05D000007 ORTHO05D000017 9.7e-06 53.9 87 39.1
Peaxi162Scf00421g00008 Petunia axillaris HOM05D000007 ORTHO05D000017 9.7e-06 53.9 85 32.9
Solyc01g067030.2 Solanum lycopersicum HOM05D000007 ORTHO05D000017 9.7e-06 53.9 90 37.8
vmacro00490 Vaccinium macrocarpon HOM05D000007 ORTHO05D000017 9.7e-06 53.9 91 35.2


User provided reference genes

Program Settings