Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 1.6e-55 219.2 109 100.0
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 3.0e-54 214.9 109 98.2
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 8.8e-54 213.4 109 97.2
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 5.3e-51 204.1 109 91.7
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 9.1e-51 203.4 109 89.9
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 2.0e-50 202.2 109 90.8
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 3.4e-50 201.4 109 88.1
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 4.5e-50 201.1 109 89.9
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 5.9e-50 200.7 109 89.0
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 7.7e-50 200.3 109 88.1
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 6.5e-49 197.2 109 87.2
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 7.2e-48 193.7 109 86.2
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 4.4e-45 184.5 106 84.0
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 9.7e-45 183.3 108 80.6
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 1.7e-44 182.6 106 84.0
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 2.2e-44 182.2 106 83.0
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 2.8e-44 181.8 109 79.8
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 4.8e-44 181.0 106 83.0
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 8.2e-44 180.3 110 79.1
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 8.2e-44 180.3 108 79.6
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 1.4e-43 179.5 106 81.1
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 1.4e-43 179.5 106 82.1
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.8e-43 179.1 109 79.8
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.8e-43 179.1 109 79.8
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 1.8e-43 179.1 106 81.1
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.8e-43 179.1 106 81.1
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 4.1e-43 177.9 106 80.2
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 4.1e-43 177.9 108 77.8
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 4.1e-43 177.9 106 78.3
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 4.1e-43 177.9 106 78.3
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 5.3e-43 177.6 106 83.0
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 7.0e-43 177.2 106 81.1
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 9.1e-43 176.8 102 84.3
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 9.1e-43 176.8 108 79.6
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 1.2e-42 176.4 109 81.7
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 1.2e-42 176.4 104 80.8
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 1.2e-42 176.4 105 82.9
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 1.6e-42 176.0 103 83.5
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 1.6e-42 176.0 105 81.9
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 1.6e-42 176.0 107 78.5
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 1.6e-42 176.0 107 78.5
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 2.6e-42 175.3 104 79.8
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 3.5e-42 174.9 103 82.5
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 4.5e-42 174.5 107 77.6
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 4.5e-42 174.5 107 77.6
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 5.9e-42 174.1 102 78.4
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 5.9e-42 174.1 106 80.2
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 5.9e-42 174.1 106 83.0
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 7.7e-42 173.7 107 79.4
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 7.7e-42 173.7 109 80.7
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 7.7e-42 173.7 103 80.6
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 7.7e-42 173.7 106 81.1
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 1.3e-41 172.9 102 81.4
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 1.7e-41 172.6 103 80.6
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 2.2e-41 172.2 106 78.3
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 2.9e-41 171.8 106 80.2
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 3.8e-41 171.4 103 79.6
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 5.0e-41 171.0 109 77.1
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 5.0e-41 171.0 106 82.1
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 6.5e-41 170.6 109 79.8
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 8.5e-41 170.2 108 75.9
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 8.5e-41 170.2 107 75.7
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 8.5e-41 170.2 104 79.8
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 8.5e-41 170.2 109 72.5
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 8.5e-41 170.2 109 72.5
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 8.5e-41 170.2 106 77.4
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 1.1e-40 169.9 104 77.9
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 1.1e-40 169.9 106 79.2
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 1.1e-40 169.9 104 78.8
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 1.5e-40 169.5 108 75.9
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 1.5e-40 169.5 106 78.3
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 1.5e-40 169.5 107 75.7
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 1.9e-40 169.1 104 77.9
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.9e-40 169.1 106 78.3
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 2.5e-40 168.7 108 75.9
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 2.5e-40 168.7 106 78.3
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 3.2e-40 168.3 98 81.6
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 3.2e-40 168.3 107 73.8
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 5.5e-40 167.5 107 76.6
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 5.5e-40 167.5 106 78.3
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 7.2e-40 167.2 106 78.3
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 7.2e-40 167.2 106 78.3
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 7.2e-40 167.2 106 78.3
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 7.2e-40 167.2 106 78.3
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 7.2e-40 167.2 106 78.3
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 9.4e-40 166.8 98 82.7
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 1.2e-39 166.4 105 80.0
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 1.2e-39 166.4 100 78.0
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 1.2e-39 166.4 103 77.7
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 1.6e-39 166.0 103 77.7
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 2.1e-39 165.6 107 73.8
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 2.1e-39 165.6 104 78.8
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 2.7e-39 165.2 105 79.0
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 3.6e-39 164.9 98 82.7
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 4.7e-39 164.5 105 76.2
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 4.7e-39 164.5 98 80.6
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 8.0e-39 163.7 109 74.3
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 1.4e-38 162.9 101 79.2
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 4.0e-38 161.4 98 77.6
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 4.0e-38 161.4 98 78.6
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 4.0e-38 161.4 98 82.7
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 6.7e-38 160.6 98 80.6
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 6.7e-38 160.6 106 75.5
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 1.5e-37 159.5 106 76.4
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 1.5e-37 159.5 108 72.2
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 3.3e-37 158.3 106 74.5
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 4.4e-37 157.9 98 76.5
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 3.7e-36 154.8 95 78.9
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 5.3e-35 151.0 98 76.5
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 1.2e-34 149.8 111 64.9
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 1.2e-34 149.8 104 76.0
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 1.0e-33 146.7 106 68.9
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 1.3e-33 146.4 106 66.0
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 2.2e-33 145.6 106 68.9
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 2.2e-33 145.6 106 66.0
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 5.0e-33 144.4 106 67.9
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 6.5e-33 144.1 106 65.1
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 8.5e-33 143.7 106 67.0
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 1.5e-32 142.9 106 67.0
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 4.2e-32 141.4 106 66.0
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 4.2e-32 141.4 106 66.0
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 4.2e-32 141.4 109 67.9
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 5.5e-32 141.0 106 66.0
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 5.5e-32 141.0 106 66.0
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 7.2e-32 140.6 106 65.1
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 9.4e-32 140.2 106 65.1
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 9.4e-32 140.2 106 65.1
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 1.0e-30 136.7 107 65.4
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 1.0e-30 136.7 107 65.4
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 1.0e-30 136.7 107 65.4
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 1.0e-30 136.7 107 65.4
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 2.3e-30 135.6 87 78.2
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 3.0e-30 135.2 106 64.2
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 6.8e-30 134.0 104 68.3
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 1.2e-29 133.3 97 66.0
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 5.7e-29 131.0 97 67.0
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 2.8e-28 128.6 94 72.3
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 8.3e-28 127.1 103 63.1
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 1.2e-26 123.2 98 58.2
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 2.0e-26 122.5 66 87.9
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 2.5e-24 115.5 79 69.6
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.6e-23 112.8 65 80.0
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 6.1e-23 110.9 92 60.9
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 8.0e-23 110.5 85 64.7
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 1.4e-22 109.8 90 64.4
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 1.8e-22 109.4 96 60.4
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 2.3e-22 109.0 75 74.7
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 4.0e-22 108.2 96 60.4
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 8.3e-20 100.5 88 58.0
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 1.4e-19 99.8 56 83.9
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 2.4e-19 99.0 97 55.7
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 3.5e-18 95.1 90 57.8
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 2.9e-17 92.0 79 62.0
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 3.8e-17 91.7 56 75.0
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 8.6e-17 90.5 56 76.8
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 1.1e-16 90.1 58 74.1
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 7.3e-16 87.4 55 78.2
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 4.9e-12 74.7 87 47.1
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 5.4e-11 71.2 106 42.5
Nn2g15167 Nelumbo nucifera HOM05D004421 ORTHO05D005227 6.6e-09 64.3 46 71.7
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 3.1e-06 55.5 81 40.7


User provided reference genes

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